mRNA_E_fasciculatus_S2_contig7614.15782.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7614.15782.1
Unique NamemRNA_E_fasciculatus_S2_contig7614.15782.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7614.15782.1 vs.
Match: OTU (domain-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGR1_ECTSI)

HSP 1 Score: 278 bits (711), Expect = 3.180e-91
Identity = 150/158 (94.94%), Postives = 150/158 (94.94%), Query Frame = 1 
Query:    1 ESPWPEEEAAVARSCPWASPPNIVAALETTGGRGDDAIELLIATRNEPGLEEEGVDNAAGDKKGTGKLEGGGDSGEKQQENGRPGEGKSRGGGVAKKSEKAAKKVARASDCPCGSGLKYKKCCRKKDAAIARGQIAAPAEPDASGDSLVVDDLGSLVI 474
            ESPWPEEEAAVARSCPWASPPNIVAALETTGGRGDDAIELLIA RNEPGLEE GVDN AGDKKGTGKLE GGDSGEK QENGRPGEGK RGGGVAKKSEKAAKKVARASDCPCGSGLKYKKCCRKKDAAIARGQI APAEPDASGDS VVDDLGSLVI
Sbjct:  204 ESPWPEEEAAVARSCPWASPPNIVAALETTGGRGDDAIELLIAARNEPGLEE-GVDNTAGDKKGTGKLEDGGDSGEKPQENGRPGEGKGRGGGVAKKSEKAAKKVARASDCPCGSGLKYKKCCRKKDAAIARGQIDAPAEPDASGDSSVVDDLGSLVI 360
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7614.15782.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
OTU3.180e-9194.94domain-containing protein, putative n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7614contigE_fasciculatus_S2_contig7614:6697..7173 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score283.1
Seed ortholog evalue8e-74
Seed eggNOG ortholog2880.D7FGR1
Preferred nameotud3
Model size477
KEGG koko:K13717
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.thiol-dependent ubiquitin-specific protease activity
EggNOG OGsKOG2605@1,KOG2605@2759
Ec32 ortholog descriptionSEC-C motif
Ec32 orthologEc-04_001190.1
EC3.4.19.12
Cds size477
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842423.777137-CDS-E_fasciculatus_S2_contig7614:6696..71731696842423.777137-CDS-E_fasciculatus_S2_contig7614:6696..7173Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7614 6697..7173 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7614.15782.1prot_E_fasciculatus_S2_contig7614.15782.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7614 6697..7173 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7614.15782.1

>prot_E_fasciculatus_S2_contig7614.15782.1 ID=prot_E_fasciculatus_S2_contig7614.15782.1|Name=mRNA_E_fasciculatus_S2_contig7614.15782.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=159bp
ESPWPEEEAAVARSCPWASPPNIVAALETTGGRGDDAIELLIATRNEPGL
EEEGVDNAAGDKKGTGKLEGGGDSGEKQQENGRPGEGKSRGGGVAKKSEK
AAKKVARASDCPCGSGLKYKKCCRKKDAAIARGQIAAPAEPDASGDSLVV
DDLGSLVI*
back to top

mRNA from alignment at E_fasciculatus_S2_contig7614:6697..7173-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7614.15782.1 ID=mRNA_E_fasciculatus_S2_contig7614.15782.1|Name=mRNA_E_fasciculatus_S2_contig7614.15782.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=477bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7614:6697..7173- (Ectocarpus fasciculatus EfasUO2)
GAAAGCCCATGGCCTGAGGAGGAAGCAGCCGTGGCTCGAAGCTGCCCGTG
GGCGTCCCCGCCGAATATTGTGGCGGCGTTGGAAACCACTGGAGGAAGGG
GCGACGACGCGATAGAGCTCCTCATCGCCACTCGAAACGAGCCCGGTCTT
GAGGAAGAGGGTGTAGACAATGCGGCGGGAGACAAGAAGGGGACGGGAAA
GCTAGAAGGTGGTGGGGATTCCGGCGAGAAACAGCAGGAGAACGGGCGAC
CCGGCGAAGGGAAGAGCAGGGGTGGGGGCGTTGCGAAGAAGAGCGAAAAG
GCTGCCAAGAAGGTCGCAAGAGCTTCGGACTGCCCGTGTGGCTCGGGCCT
CAAGTACAAGAAGTGCTGCCGTAAGAAAGACGCCGCGATAGCCCGCGGAC
AAATTGCTGCTCCTGCAGAGCCGGACGCGTCGGGAGACTCTTTGGTTGTA
GATGATCTGGGATCATTGGTTATTTGA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7614:6697..7173-

>mRNA_E_fasciculatus_S2_contig7614.15782.1 ID=mRNA_E_fasciculatus_S2_contig7614.15782.1|Name=mRNA_E_fasciculatus_S2_contig7614.15782.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=477bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7614:6697..7173- (Ectocarpus fasciculatus EfasUO2)
GAAAGCCCATGGCCTGAGGAGGAAGCAGCCGTGGCTCGAAGCTGCCCGTG
GGCGTCCCCGCCGAATATTGTGGCGGCGTTGGAAACCACTGGAGGAAGGG
GCGACGACGCGATAGAGCTCCTCATCGCCACTCGAAACGAGCCCGGTCTT
GAGGAAGAGGGTGTAGACAATGCGGCGGGAGACAAGAAGGGGACGGGAAA
GCTAGAAGGTGGTGGGGATTCCGGCGAGAAACAGCAGGAGAACGGGCGAC
CCGGCGAAGGGAAGAGCAGGGGTGGGGGCGTTGCGAAGAAGAGCGAAAAG
GCTGCCAAGAAGGTCGCAAGAGCTTCGGACTGCCCGTGTGGCTCGGGCCT
CAAGTACAAGAAGTGCTGCCGTAAGAAAGACGCCGCGATAGCCCGCGGAC
AAATTGCTGCTCCTGCAGAGCCGGACGCGTCGGGAGACTCTTTGGTTGTA
GATGATCTGGGATCATTGGTTATTTGA
back to top