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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 849 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Ec32 ortholog description | Hypothetical protein |
| Ec32 ortholog | Ec-19_002670.2 |
| Cds size | 438 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842422.4346957-UTR-E_fasciculatus_S2_contig760:7088..7257 | 1696842422.4346957-UTR-E_fasciculatus_S2_contig760:7088..7257 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig760 7089..7257 - |
| 1696842422.471828-UTR-E_fasciculatus_S2_contig760:9054..9296 | 1696842422.471828-UTR-E_fasciculatus_S2_contig760:9054..9296 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig760 9055..9296 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842422.4444158-CDS-E_fasciculatus_S2_contig760:7257..7438 | 1696842422.4444158-CDS-E_fasciculatus_S2_contig760:7257..7438 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig760 7258..7438 - |
| 1696842422.4532213-CDS-E_fasciculatus_S2_contig760:7816..7977 | 1696842422.4532213-CDS-E_fasciculatus_S2_contig760:7816..7977 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig760 7817..7977 - |
| 1696842422.4619138-CDS-E_fasciculatus_S2_contig760:8958..9054 | 1696842422.4619138-CDS-E_fasciculatus_S2_contig760:8958..9054 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig760 8959..9054 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig760.15770.1 >prot_E_fasciculatus_S2_contig760.15770.1 ID=prot_E_fasciculatus_S2_contig760.15770.1|Name=mRNA_E_fasciculatus_S2_contig760.15770.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=146bp
MRSAVEKSSLTDIKAPSRQLFDSPTLLLEVCEDRGLENSTLANARFTTAA
LLFLADNPQSLTWECMACHQTIQNVRFCCETHSYVMCEKCVSIRQGEIDR
MVCPVEGDCGMGVVPRKVPVIDDPPAAAAITHDSGKRRSTRSTRG* back to topmRNA from alignment at E_fasciculatus_S2_contig760:7089..9296- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig760.15770.1 ID=mRNA_E_fasciculatus_S2_contig760.15770.1|Name=mRNA_E_fasciculatus_S2_contig760.15770.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2208bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig760:7089..9296- (Ectocarpus fasciculatus EfasUO2)
GGCAAGGCCAAGAATCCGGAAGCGCCGTCATACGCCAGGCTAAAGACGAA
CCCGACGCAAGCGGCAACGCGCCCAACGTTGACGGAGAAGAAGGCTCGGC
GAAGGGTGCTCCAAGCGAGAACGTGGATACCGGCGTCGAGGAGAAGTCTG
CGCCAATAAACAGGACGAAAGTCAGGACACAATCAAACCTCCTGGACCCG
GAGGACGCCGTCGAACCCGTCCTCGAAAGCCTCCGTGGTGCCATGCGCTC
AGCCGTCGAGAAATCCAGTTTGACGGATATCAAGGCACCCTCTCGTCAGC
TTTTCGATAGCCCGACCCTCCTCTTGGAGGTTTGTGAGGTAAGCGATTGG
GACATGCTCTTGTTCTCGGAGTGACTGCCTCGCAGTAAGCTCTCGACCAC
ATCAGTCGCGAAATGGGCCCACTGCAGCTACTTTGTGCCTAGTTATACCA
AGGCTTGCCGGAATGGAGAGAGAGGAAAACCTCTAACCGGGTGGAAAGAG
GACGTCAGCCCATTAATAATGTTGCAGGAGGAAGAGAGTAGAACTCGTGC
CGTTAGGCAGAAAAAATGCAAAGGAGAATCGTAAGAGCGCCCGACCGTGA
GCGGTATTCTCTACCTGGAACACGAGCGGGGTTCTCCGTCTCGAAATGGG
GACGAGTGACCATGGTCAAATGATAAAGGCAACCAAAAGATTATTCCCCC
GCCCCCCGGCAAGCGGTGTATTGCTCTCCAAGTGGAGGTGTTGACGCAGC
TTTGACTCTTCTTGGGGGCGCTCGTAGTACATTCAAATTCCAACACAATC
CCATTCATGAATCGTTGCTCACAGCCAGTTTCTAACTGTCCTACGGCCTT
GCCCTTCGAACGGAAGAGCGTCGACTCGAGACTATACCAAGTATATTCTG
TGGGTCACACCATCACCTTTGAACGCGCCTACAGCGGTCCTACCCGCAAG
TATACTCGCGAACGAGCATTTCTTCTACACGACTGCGCCGAAGGAGCAGA
ATAGACACAGGTCGCTGAAGATTGGACTCGCAACAACCCTTACCCACTCC
AATAGATAGATGGCTTTCAAGAATACAAAAGAGACCACCGGGACGACTGC
TTCTATAAAACCGTTGCCCTTGAACGTGACGGTTCTACAGAAAGAGGCGT
CGAGTTCATGCAGCAGCAGCAACGTACATGTAGTTAGGTACAGTCTGCAG
TGCAACCAGATGTGCCGCCAGACTAATCCCATCAACCCATCACCTGTGGA
GAAATTTCGCTGAAAATGGCCACCCTGCTCCCCCCGCCTTGTCGATATCG
CTTGTCGTCACAAAAATAGGACCGCGGGCTCGAGAACAGCACTCTTGCAA
ATGCGCGTTTCACGACTGCCGCGCTGCTGTTCTTGGCAGACAATCCCCAG
AGCTTAACTTGGGAGTGTATGGCTTGTCACCAGACAATTCAGAATGTGCG
GTTCTGCTGTGAAACTCACAGCTATGTCATGTGAGTCGATGTCTCCGGCG
TTCTGGTCTACAGCAGCAATAGTCTGCAACAGAATGTGATAGCGGGAGGT
TTGGTTGCCAATATCCAGTAAATTTTAGTGTACCTTTTCTAGGGTACGTT
AGCCCGTGACCACGGGAATCGACCGCGTCAAGTGTTGGATTAGTACGGAC
ATAGGAAGGTACTGGGTAGAGAGAGATCGGAACGGTTTTTTATGTGAAGA
CAACAACAACAACAACAACAACAATCCTCGACGAGCAAATTCATCGGCTC
TTCTGGATTTAGCCTTGTTTTTTTCACACCGAGGAACGAGGAATCACAGT
ACTAACTCCAACTTGTTTTTGTCCACGTGCCTTTCGTCAATAATTTGCGA
AACAACAGGTGCGAAAAATGCGTCAGCATTAGGCAAGGGGAAATAGACCG
CATGGTCTGCCCTGTGGAGGGTGATTGCGGGATGGGAGTGGTCCCCCGCA
AAGTGCCAGTGATTGACGACCCTCCAGCTGCTGCCGCCATCACCCACGAC
TCCGGGAAAAGGCGAAGTACACGCTCAACGCGTGGGTGACTGCTTGTTCC
CTCGTCAGCGGGTTGTTTGTGGATCAGCAGTCCCGGGCATAGTTTTGGTC
AGAACGGAGACAGCGGCCAGAAGCGCTTCCACCTGGGTGTTGCGGGGTGC
CTATCCTGTATCTTCCGCGAGCTCGTGCGGCGCACCGCACACACTTTCAC
GCACCAAG back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig760:7089..9296- >mRNA_E_fasciculatus_S2_contig760.15770.1 ID=mRNA_E_fasciculatus_S2_contig760.15770.1|Name=mRNA_E_fasciculatus_S2_contig760.15770.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=438bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig760:7089..9296- (Ectocarpus fasciculatus EfasUO2)
ATGCGCTCAGCCGTCGAGAAATCCAGTTTGACGGATATCAAGGCACCCTC
TCGTCAGCTTTTCGATAGCCCGACCCTCCTCTTGGAGGTTTGTGAGGACC
GCGGGCTCGAGAACAGCACTCTTGCAAATGCGCGTTTCACGACTGCCGCG
CTGCTGTTCTTGGCAGACAATCCCCAGAGCTTAACTTGGGAGTGTATGGC
TTGTCACCAGACAATTCAGAATGTGCGGTTCTGCTGTGAAACTCACAGCT
ATGTCATGTGCGAAAAATGCGTCAGCATTAGGCAAGGGGAAATAGACCGC
ATGGTCTGCCCTGTGGAGGGTGATTGCGGGATGGGAGTGGTCCCCCGCAA
AGTGCCAGTGATTGACGACCCTCCAGCTGCTGCCGCCATCACCCACGACT
CCGGGAAAAGGCGAAGTACACGCTCAACGCGTGGGTGA back to top
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