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Homology
BLAST of mRNA_E_fasciculatus_S2_contig76.15766.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTH5_9PHAE) HSP 1 Score: 673 bits (1736), Expect = 6.300e-239 Identity = 353/384 (91.93%), Postives = 360/384 (93.75%), Query Frame = 1
Query: 79 MRYSTTPAMLVASWLAKRVDAFVVAPPSNGASWRASRQSQQQQQ----LSVTAARGRSAGVGLARVVPRLKRRMCTAMNTNDGARWAPIPNVPNMNGGTNPEEMMRQMSIPDLAQKLDQAESTFGQVHPQVAAALIPLSQALYANGDLGPARQSCTRALQILQMAYKERPSVEMAEALHTLAMIQQAESPEVGDKALGSQNMALELAMRVFGPDSVEVAAYARCLAQMSEDYSQFLSPGLPRPFYMPNPIPLYRQTLSIIEKVIGPKDPSVASALDDLASALLFHRDDDYTEMKAVTLLPEAETLAARSLAISRESLGEEHPITAGREHNLGMVKRGLQKPKESLECFRRALAIREKVLGVDHPDSKSSRELVEEEENGAAPPP 1218
MRYSTTPAMLVASWLA R DAFVVAPPS+GA WR+SRQ+ LSVTA R S G LARVVPRLKRRM TAMNTNDGARWAPIPNVPNM GGTNPEEMMRQMSIPDLAQKLDQAESTFGQVHPQVAAALIPLSQALYANGDLGPARQSCTRALQILQ AYKERPSVEMAEALHTLAMIQQAESPEVGDKALGSQNMALELAMRVFGPDSVEVAAYARCLAQMSEDYSQFLSPGLPRPFYMPNPIPLYRQTLSIIEKVIGPKDPSVASALDDLASALLFHRDDDYTEMKAVTLLPEAETLA RSLAISR SLGEEHPITAGREHNLGM+KRGLQKPKESL+CFRRALAIREKVLGVDHPD+KSSRELVEEEE+G APPP
Sbjct: 1 MRYSTTPAMLVASWLANRADAFVVAPPSHGAKWRSSRQNXXXXXXXXXLSVTAVRRCSVGSSLARVVPRLKRRMSTAMNTNDGARWAPIPNVPNMEGGTNPEEMMRQMSIPDLAQKLDQAESTFGQVHPQVAAALIPLSQALYANGDLGPARQSCTRALQILQRAYKERPSVEMAEALHTLAMIQQAESPEVGDKALGSQNMALELAMRVFGPDSVEVAAYARCLAQMSEDYSQFLSPGLPRPFYMPNPIPLYRQTLSIIEKVIGPKDPSVASALDDLASALLFHRDDDYTEMKAVTLLPEAETLATRSLAISRASLGEEHPITAGREHNLGMIKRGLQKPKESLDCFRRALAIREKVLGVDHPDTKSSRELVEEEESGTAPPP 384
BLAST of mRNA_E_fasciculatus_S2_contig76.15766.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQU3_ECTSI) HSP 1 Score: 548 bits (1413), Expect = 2.160e-191 Identity = 282/290 (97.24%), Postives = 286/290 (98.62%), Query Frame = 1
Query: 349 MNGGTNPEEMMRQMSIPDLAQKLDQAESTFGQVHPQVAAALIPLSQALYANGDLGPARQSCTRALQILQMAYKERPSVEMAEALHTLAMIQQAESPEVGDKALGSQNMALELAMRVFGPDSVEVAAYARCLAQMSEDYSQFLSPGLPRPFYMPNPIPLYRQTLSIIEKVIGPKDPSVASALDDLASALLFHRDDDYTEMKAVTLLPEAETLAARSLAISRESLGEEHPITAGREHNLGMVKRGLQKPKESLECFRRALAIREKVLGVDHPDSKSSRELVEEEENGAAPPP 1218
M GG +PEEMMRQMSIPDLAQKLDQAESTFGQVHPQVAAALIPLSQALYANGDLGPARQSCTRALQILQMAYKERPSVEMAEALHTLAMIQQAESPEVGDKALGSQNMALELAMRVFGPDSVEVAAYARCLAQMSEDYSQFLSPGLPRPFYMPNPIPLYRQTLSIIEKVIGPKDPSVASALDDLASALLFHRDDDYTEMKAVTLLPEAETLAARSLAISR SLGEEHPITAGREHNLGM+KRGLQKPKESL+CFRRALAIREKVLGVDHPDSKSSRELVEEEE+G APPP
Sbjct: 1 MKGGADPEEMMRQMSIPDLAQKLDQAESTFGQVHPQVAAALIPLSQALYANGDLGPARQSCTRALQILQMAYKERPSVEMAEALHTLAMIQQAESPEVGDKALGSQNMALELAMRVFGPDSVEVAAYARCLAQMSEDYSQFLSPGLPRPFYMPNPIPLYRQTLSIIEKVIGPKDPSVASALDDLASALLFHRDDDYTEMKAVTLLPEAETLAARSLAISRASLGEEHPITAGREHNLGMIKRGLQKPKESLDCFRRALAIREKVLGVDHPDSKSSRELVEEEESGTAPPP 290
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Stop | 1 |
| Start | 1 |
| Seed ortholog score | 553.1 |
| Seed ortholog evalue | 9.9e-155 |
| Seed eggNOG ortholog | 2880.D7FQU3 |
| Model size | 1860 |
| Hectar predicted targeting category | signal peptide |
| Exons | 7 |
| EggNOG free text desc. | determination of stomach left/right asymmetry |
| EggNOG OGs | COG0457@1,KOG1840@2759 |
| Ec32 ortholog description | Tetratricopeptide-like helical domain |
| Ec32 ortholog | Ec-16_000740.1 |
| Cds size | 1143 |
| COG Functional cat. | C |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696842421.717584-UTR-E_fasciculatus_S2_contig76:27287..27926 | 1696842421.717584-UTR-E_fasciculatus_S2_contig76:27287..27926 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig76 27288..27926 - |
| 1696842421.8404279-UTR-E_fasciculatus_S2_contig76:31960..32038 | 1696842421.8404279-UTR-E_fasciculatus_S2_contig76:31960..32038 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig76 31961..32038 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696842421.7410371-CDS-E_fasciculatus_S2_contig76:27926..28047 | 1696842421.7410371-CDS-E_fasciculatus_S2_contig76:27926..28047 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig76 27927..28047 - |
| 1696842421.7569818-CDS-E_fasciculatus_S2_contig76:28217..28441 | 1696842421.7569818-CDS-E_fasciculatus_S2_contig76:28217..28441 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig76 28218..28441 - |
| 1696842421.7734377-CDS-E_fasciculatus_S2_contig76:28620..28815 | 1696842421.7734377-CDS-E_fasciculatus_S2_contig76:28620..28815 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig76 28621..28815 - |
| 1696842421.7883708-CDS-E_fasciculatus_S2_contig76:29144..29240 | 1696842421.7883708-CDS-E_fasciculatus_S2_contig76:29144..29240 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig76 29145..29240 - |
| 1696842421.797395-CDS-E_fasciculatus_S2_contig76:30446..30575 | 1696842421.797395-CDS-E_fasciculatus_S2_contig76:30446..30575 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig76 30447..30575 - |
| 1696842421.805862-CDS-E_fasciculatus_S2_contig76:30978..31080 | 1696842421.805862-CDS-E_fasciculatus_S2_contig76:30978..31080 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig76 30979..31080 - |
| 1696842421.8257658-CDS-E_fasciculatus_S2_contig76:31684..31960 | 1696842421.8257658-CDS-E_fasciculatus_S2_contig76:31684..31960 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig76 31685..31960 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig76.15766.1 >prot_E_fasciculatus_S2_contig76.15766.1 ID=prot_E_fasciculatus_S2_contig76.15766.1|Name=mRNA_E_fasciculatus_S2_contig76.15766.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=381bp
MRYSTTPAMLVASWLAKRVDAFVVAPPSNGASWRASRQSQQQQQLSVTAA RGRSAGVGLARVVPRLKRRMCTAMNTNDGARWAPIPNVPNMNGGTNPEEM MRQMSIPDLAQKLDQAESTFGQVHPQVAAALIPLSQALYANGDLGPARQS CTRALQILQMAYKERPSVEMAEALHTLAMIQQAESPEVGDKALGSQNMAL ELAMRVFGPDSVEVAAYARCLAQMSEDYSQFLSPGLPRPFYMPNPIPLYR QTLSIIEKVIGPKDPSVASALDDLASALLFHRDDDYTEMKAVTLLPEAET LAARSLAISRESLGEEHPITAGREHNLGMVKRGLQKPKESLECFRRALAI REKVLGVDHPDSKSSRELVEEEENGAAPPP* back to topmRNA from alignment at E_fasciculatus_S2_contig76:27288..32038- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig76.15766.1 ID=mRNA_E_fasciculatus_S2_contig76.15766.1|Name=mRNA_E_fasciculatus_S2_contig76.15766.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4751bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig76:27288..32038- (Ectocarpus fasciculatus EfasUO2) ACGACTCAGAGGTTTTTACCGGAGCGTTTTGCATGAGACCGGCCGAAGGT
GCAGAGTCGCACGCGAGCTACCATTACCATGCGTTACTCGACTACGCCAG
CGATGTTGGTAGCTTCATGGTTGGCAAAGAGGGTTGATGCATTCGTGGTG
GCTCCGCCTAGTAATGGAGCTAGTTGGCGCGCCTCTCGGCAAAGCCAGCA
ACAGCAACAACTCAGCGTCACAGCCGCACGCGGGCGCTCAGCAGGCGTTG
GTCTCGCTCGAGTCGTGCCAAGGCTGAAGCGAAGGATGTGTACGGCGATG
AACACCAATGATGGGGCGAGATGGGCACCGATACCCAATGTACCCAACAT
GAATGTGAGCTCCGTCGAGGACCTCGGCTTGCTGCTGGCTCTCTCGCCTC
CTACGTGGCGTGCTGCTGCTGTGTGTGTGTCCTGTATAGGTGCTTCGGAG
GACTGACTGCTGTTGTGTGTTTCCTATCTTGTTGGCTGCGTGGTAGCACC
GTAAGGACTTGGATGCTCACTTCTTGTCAGCCGTCGCAAAGGGGTTGAGC
CTACGCGGCCACTACCTCTGATGGAGACCTACTGCTGTACCCACTGCTGT
GACAGCAGTAGACCCACTGCTATGTTGTTGTCTGCACATGAACCGTTGCT
GGTGTTCACAGCAGCGGCAGTGTCGCATCTGGCGGCGGGGCAGGAAACGT
TCTTCTCTATCTACAAGTCTACCTATGCATGTCGGGAATGGCGAGACTGT
TTACACTTCTGTGCATGAGACAATGCGCACAGAGTAATATGTCTCAGAGC
ATACGTGGTGCACCAACAACGAGCCCCTTTCCCGGTTCCGTCACACCCGG
TTGGTACTTGCAGCACAGACGATTTTACGATGTTACCCTTTGTCGAAGCT
GCAGCTACTTGTACCCCGTTTTACTTTGATACGGCGGCACGTGCTTGCTC
GTTCCTAGGGTGGTACCAACCCGGAGGAAATGATGAGACAAATGTCTATT
CCCGATCTGGCGCAAAAGCTAGACCAGGCCGAGAGCACCTTCGGCCAAGT
GCATCCTCAGGTACGCCCACCAGCTGAACAGCCAAGAATCCTACCTGTGA
ACCTCTGTACTGCATTTAGACTAATAGTACTCGTTTCGCAGATCTTGTCA
GTCAATGTCGAATACAGTACTACCGTTAGTATTCAGTGGCAAAATTTCAT
TGACGGGCAGGAGTCCCATCATTGTGATTTCCCGCTTTGTCTTGGTTGTG
CACTCTGGATGAAACTTTCTCAAAGGCTTGGTCGTACTCCGTACTCTGCA
ATACTCCGGGGTGCGAAGTCAATGACGCCCAAACAAGACGCTTGACTCGC
TGCCTTCATCACAACTGGTCCTACTTCACCGTCACGTACCACATTGCCGG
GGTGTTCGAGCCCCTCACATTTTGCTCTTCACATGTGGCGCCAATGTTGG
GGCTAAATTACAGGTGGCGGCAGCGCTGATTCCCTTGTCTCAGGCGCTCT
ACGCGAACGGAGATTTGGGCCCTGCTAGGCAATCGTGCACGCGTGCTCTC
CAGATTTTGCAGATGGCGTATAAGGAAAGGCCATCGGTCGAGGTAAGCAA
GGAGGCAGATAAGTGCATGAGGGTTAAGAATATGTTACGGTGTACACAAC
TCCTCTGTCAAGCCGCGGGGGGCAAGCAAAATGTGTTGTGCAAACTGTTA
CTCCAGTTCTACAGTCAACAAGAGGTATGGGATACTTTGAAAATATTGCA
GTGGACAAAAATCTCCCCTGGGTGTTGTTGCAAAAACCAGAGACATGCAC
CGCACACGAGGGGAGGGTTAGAAAGAAGAGAAAGAGTGTTATCCCGCTAC
AAGTACAGAGACTGACGGATGTTTGTTGGTCAACGTGTTCGCGCGGTGGA
TACAATATCAAGAAAAACAAGTCCTCTTGCTGCCGCGACTTCGGAACTAA
ATTGTACCGTATACACCAGGTACGAGAAAGTATTCAAGAAAAAGAGGAAG
AATGGATGTAAATGGGGGTAGCTTGGTAAAAGTATCTGCAACGATTCATA
AATACCGGAGCGAAGACCGAGATTCGTTTTTGTTTGCCCCTGAGGAAGGT
CGGCGAAAAACGATCGCCCGGGCCTAGACAAGAATGAGGGGGAGGCTTCG
AGACGTTTTTTTCACTCGTCAGGCGATATTTTGGTGGGGACTACGCCTTT
TGGAGGAAGGATATGACAAAGGATGTTGCGGTAGACCAATTCAATCAGTT
TTAGGTTACGATATTTGCTAGAACCTATGAGGGAACACTTGCCGCCAGTG
TGAACTTCTGTATCCGCGGGGGAGCTGGGAGTATACCATGAACACAACAC
AAAGTGAAGGTAGGCAGAATTACTGGTATAGACGCATGAGGTTCGACTCT
CAACAACGTTGCGCCATTCCGTGCATAGTGTGGCCAGGTCACAACTTGTC
CTCGACGGATGCACTGTGTTAAGGTAGAGCATCAAATATCATCTCTGGAG
GGGGAGCGCGTAATAGGTGTCATATCGCTAGCTGCAAAACGCTTCCAACC
TTGCGCACCTCGATCTCCGTCAGATATGGCTTTTGCCCCCGCCATTCCAA
CCCCATGCCCTTGTGTGTGTGGCTGCAAGTGCTCTAGTTTGCTCTGAATT
AATGACGGAAACTAGCTTTCATCCTAATGGCCAACATCGCTCTTGTAGTT
TTGTTTCTGCATAGCGCGCACATTTATCAGCAACATACATCAAGTGGCCT
GCACGTAATACGCGTCTTCGTTTGATGCCCACTTCCGCCCGGCTGCAGAT
GGCAGAGGCGCTTCACACGCTGGCGATGATACAGCAGGCAGAGAGCCCAG
AAGTAGGAGACAAGGCTTTGGGATCGCAGAACATGGCGTTAGAGGTAAGG
AATGCATCCACATGTTCAACAATGCACCAACCGGATATATATGAATTTTC
TCATGTCTGGCAGCGTTGAGTAGTTACCTCGAAAAGACTATTCGTGACAC
CCATCGCCCACGGGTACATTGTGCCATCCGGTTTGTACACTCTCAGGGAA
TTGTGTACTGTGTACCGTCCTCGTAGTGTGCGCACTATTGTCATGTACGA
CTGCACGCGGGAGCACCTCCATATGCCACAATCTATTACGTCGGCCCTTA
TCCTATTGCGTCGTTTCACTTCGTTTTCCGGCACCCTGTTGTCCCCCGCC
TCCCGTTACCCTGCCGTACACAGCTTGCGATGCGTGTGTTCGGTCCAGAT
TCGGTGGAGGTTGCAGCATACGCCCGCTGCTTGGCTCAGATGTCCGAGGA
CTATTCCCAGTTCCTATCCCCTGGTCTTCCGCGGCCGTTCTACATGCCCA
ACCCGATACCGCTGTACCGCCAGACGCTCTCCATCATCGAGAAAGTCATC
GGACCCAAAGACCCTTCGGTGAGCCATGCTTTCAAACAAGAACTGCACCG
AGCTTGGGCTAAACACCGAGAATCATGACCAGCTTTTGATTGATTCTTGT
TGCTTTTGGCCCTCCTGGCGCCTGGTTGTCAGCTCACTCCTTTCCGCAAT
TACTGCCGCGACCGCTGCATGTGACCACCCACATGCTCTGTCTACAGGTG
GCGTCCGCTTTAGATGATTTGGCCAGCGCCCTTCTTTTCCATCGCGACGA
TGACTACACGGAAATGAAAGCAGTGACTCTTCTCCCGGAGGCAGAAACCC
TCGCCGCTCGCTCTCTCGCTATTTCGAGGGAATCCCTGGGCGAGGAGCAC
CCGATAACGGCGGGAAGAGAACACAACCTGGGCATGGTCAAGAGAGGACT
TCAGAAGCCGAAAGAATCATTGTGAGCACCGCACCTTGTCGCAGAGCGCT
TGGGACCTTGTTGCCGTAGTGAAGGCCCACTCCGGGGCTGACGATACCTC
CTCGATTACCTCCACCGTATGAGTGCATCTGTTGTGCTGCCGCTCACTTT
TTCATCCCTCACTCATCCGTCCGTTTTATTTCTTGCGGCAGGGAATGCTT
CCGACGCGCGCTGGCAATTCGGGAAAAGGTTTTGGGGGTAGATCACCCGG
ACTCGAAATCCTCGCGGGAGCTTGTGGAAGAAGAGGAGAACGGTGCGGCG
CCACCACCCTGAGTTTTGAACGTGTGTGCGTGACCCAGCCGTATTCTGTA
TATGGAGCATGTCTTACTTGACAGCTTGTGCCTTGCCTCTCTCTGTACGA
GGCTCGTGCTCGCTGCGGATAAAATTTGGCCTGCATCGTATCGTTTTGCT
ATTGCTGTGTTTGCAGCTTTAAAGAGAAAACGAATCGAGCGCATATCTCT
TCGCACACGGCACCCGACAACATGTCCAAGCGGGCGATCCGTGATACCGC
ATTGGTACAATGCGTAGCTGAGGGGTGCGGATGTCGGAGGATATGGTCTG
ACGCTTTCCTGGGGTCCCGTAGTGGGGACACTTGGTGAAAAAGACGTCAT
TGCTGTCAACCAGATTTTTACCGATACACTCTACTCCAGTGCACTTGTGT
TTGTAGAGGAAGACAAAGCTTTCTTGCGAGCATCACCCGAACGTCAAGCG
ATGTGTAGAGATGCACGTCTCATCAGGCCCACGAATTCTGGCGACACATG
TTCTGTTGTCAAAACCGCATCGGTGTCAACCTTCCCCATCAGGTCGTTTC
TATCCGAAAAGAGTGCAGGACGGCATGTAGTTGAGGACAATCACAACGCG
GGCAATATAATAAATTTCTATCTGTACACGCCCACCAAACAACGTTTCAA
C back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig76:27288..32038- >mRNA_E_fasciculatus_S2_contig76.15766.1 ID=mRNA_E_fasciculatus_S2_contig76.15766.1|Name=mRNA_E_fasciculatus_S2_contig76.15766.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1143bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig76:27288..32038- (Ectocarpus fasciculatus EfasUO2) ATGCGTTACTCGACTACGCCAGCGATGTTGGTAGCTTCATGGTTGGCAAA GAGGGTTGATGCATTCGTGGTGGCTCCGCCTAGTAATGGAGCTAGTTGGC GCGCCTCTCGGCAAAGCCAGCAACAGCAACAACTCAGCGTCACAGCCGCA CGCGGGCGCTCAGCAGGCGTTGGTCTCGCTCGAGTCGTGCCAAGGCTGAA GCGAAGGATGTGTACGGCGATGAACACCAATGATGGGGCGAGATGGGCAC CGATACCCAATGTACCCAACATGAATGGTGGTACCAACCCGGAGGAAATG ATGAGACAAATGTCTATTCCCGATCTGGCGCAAAAGCTAGACCAGGCCGA GAGCACCTTCGGCCAAGTGCATCCTCAGGTGGCGGCAGCGCTGATTCCCT TGTCTCAGGCGCTCTACGCGAACGGAGATTTGGGCCCTGCTAGGCAATCG TGCACGCGTGCTCTCCAGATTTTGCAGATGGCGTATAAGGAAAGGCCATC GGTCGAGATGGCAGAGGCGCTTCACACGCTGGCGATGATACAGCAGGCAG AGAGCCCAGAAGTAGGAGACAAGGCTTTGGGATCGCAGAACATGGCGTTA GAGCTTGCGATGCGTGTGTTCGGTCCAGATTCGGTGGAGGTTGCAGCATA CGCCCGCTGCTTGGCTCAGATGTCCGAGGACTATTCCCAGTTCCTATCCC CTGGTCTTCCGCGGCCGTTCTACATGCCCAACCCGATACCGCTGTACCGC CAGACGCTCTCCATCATCGAGAAAGTCATCGGACCCAAAGACCCTTCGGT GGCGTCCGCTTTAGATGATTTGGCCAGCGCCCTTCTTTTCCATCGCGACG ATGACTACACGGAAATGAAAGCAGTGACTCTTCTCCCGGAGGCAGAAACC CTCGCCGCTCGCTCTCTCGCTATTTCGAGGGAATCCCTGGGCGAGGAGCA CCCGATAACGGCGGGAAGAGAACACAACCTGGGCATGGTCAAGAGAGGAC TTCAGAAGCCGAAAGAATCATTGGAATGCTTCCGACGCGCGCTGGCAATT CGGGAAAAGGTTTTGGGGGTAGATCACCCGGACTCGAAATCCTCGCGGGA GCTTGTGGAAGAAGAGGAGAACGGTGCGGCGCCACCACCCTGA back to top
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