mRNA_E_fasciculatus_S2_contig76.15765.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig76.15765.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQU2_ECTSI) HSP 1 Score: 377 bits (969), Expect = 1.270e-119 Identity = 240/442 (54.30%), Postives = 245/442 (55.43%), Query Frame = 1
Query: 385 MSFATSDSSSVQTYNFTGIDKTHGSINSKSSVSRRKRKHDWRPANRLPTSHGVSPPSPGRLRPASPWSERDMSSDCVMNRWTASFDADRARFQSISVMCEQRLRKACVMTEHAPMPDEFRTMAACEALGTMLPVFERYGSLVTLVMKELLRSVYEDPDLVIDQFLAWLHPDPSLQSARAPAEVMLLKSKPHFVRCRELQSQIASLQESLVLKEKHEGTLLNNLTSARNSMRSLLGKDSLLITRFIFRSWKAVVEDGSALRRRFQRTRLRIWFSGIRTRLTRRMNQEAKYQLGLRERELMLHASEKGKTKRGAGQPTSEPAEETPENARPASTCELIVASLLEQAKTLMTEVQDHRNGSRDNSVLMASVTKMALAAKLAENRIRLDIGDDLSIEDEDAGVGHSTAGTQTDPVSFDNRSGGRAPGGDSQAASSGSKEEPLTPKT 1710
MSF SDSSSVQTYNFTGID THGSINSKSS+ RRKRKHDWRPANRLPTSHGVSP PGRL+ ASPWSERDMSSDCVMNRWTASFDADRARFQSISVMCEQRLRK IASLQESLVLKEKHEGTLLNNLTSARNSMRSLLGKDSLLITRFIFRSWKAV+ED SALRRRFQR VQDHRNGSR+N VLMASVTKMALAAK+AENRIRLDIGDDLSIEDED GVGHST GTQTDPVSFDN SGGR PGGDS ASSGSKEE LTPKT
Sbjct: 1 MSFTASDSSSVQTYNFTGIDNTHGSINSKSSL-RRKRKHDWRPANRLPTSHGVSPSFPGRLKAASPWSERDMSSDCVMNRWTASFDADRARFQSISVMCEQRLRK------------------------------------------------------------------------------------------------IASLQESLVLKEKHEGTLLNNLTSARNSMRSLLGKDSLLITRFIFRSWKAVMEDTSALRRRFQR-------------------------------------------------------------------------------------VQDHRNGSRENRVLMASVTKMALAAKVAENRIRLDIGDDLSIEDEDMGVGHSTTGTQTDPVSFDNPSGGRVPGGDSHTASSGSKEEALTPKT 260
BLAST of mRNA_E_fasciculatus_S2_contig76.15765.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB4_9PHAE) HSP 1 Score: 102 bits (254), Expect = 1.190e-22 Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 1
Query: 2617 MLWQLSGYAMSTPTMHRLFKLTTVSDKENKKKFSFVQTSALAEHILRSVFHFTTDE 2784
MLWQLSGYAMSTPTMHRLFKLTTVSDKE+KKK FVQTSALAE ILRSV HFTTDE
Sbjct: 1 MLWQLSGYAMSTPTMHRLFKLTTVSDKEDKKKILFVQTSALAEQILRSVSHFTTDE 56 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig76.15765.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig76.15765.1 >prot_E_fasciculatus_S2_contig76.15765.1 ID=prot_E_fasciculatus_S2_contig76.15765.1|Name=mRNA_E_fasciculatus_S2_contig76.15765.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=1016bp CATSVAKTRCCRHHTLMNVTWGEFPLQLPRDILGARSTVLPDEISQSRPGback to top mRNA from alignment at E_fasciculatus_S2_contig76:16997..27064+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig76.15765.1 ID=mRNA_E_fasciculatus_S2_contig76.15765.1|Name=mRNA_E_fasciculatus_S2_contig76.15765.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=10068bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig76:16997..27064+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig76:16997..27064+ >mRNA_E_fasciculatus_S2_contig76.15765.1 ID=mRNA_E_fasciculatus_S2_contig76.15765.1|Name=mRNA_E_fasciculatus_S2_contig76.15765.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=3048bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig76:16997..27064+ (Ectocarpus fasciculatus EfasUO2)back to top |