mRNA_E_fasciculatus_S2_contig7597.15761.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7597.15761.1
Unique NamemRNA_E_fasciculatus_S2_contig7597.15761.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7597.15761.1 vs.
Match: Signal (transducer, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU02_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 1.070e-21
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    1 QTNFQREFVETEGFRRIADASELEQRENRLLRAGGFLPPGTPPSPCV 141
            +TNFQREFVETEGFRRI DA+ELEQRENRLLRAGGFLPP  PPSPCV
Sbjct:  128 ETNFQREFVETEGFRRIVDAAELEQRENRLLRAGGFLPPDAPPSPCV 174
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BLAST of mRNA_E_fasciculatus_S2_contig7597.15761.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K499_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 3.610e-21
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    1 QTNFQREFVETEGFRRIADASELEQRENRLLRAGGFLPPGTPPSPCV 141
            +TNFQREFVETEGFRRI DA+E EQRENRLL+AGGFLPP +PPSPCV
Sbjct:   54 ETNFQREFVETEGFRRIVDAAEQEQRENRLLQAGGFLPPDSPPSPCV 100
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BLAST of mRNA_E_fasciculatus_S2_contig7597.15761.1 vs.
Match: RGS (domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJQ0_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.430e-18
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 QTNFQREFVETEGFRRIADASELEQRENRLLRAGGFLPPGTPPSPC 138
            +TNFQREFVETEGFRRI +ASELEQRENRLLRAGGFLPP TPPS C
Sbjct:  411 ETNFQREFVETEGFRRIVEASELEQRENRLLRAGGFLPPDTPPSLC 456
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BLAST of mRNA_E_fasciculatus_S2_contig7597.15761.1 vs.
Match: RGS (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ9_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 6.020e-17
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 QTNFQREFVETEGFRRIADASELEQRENRLLRAGGFLPPGTPPSPCV 141
            +  F+ EFVETEGFRRIA+ASELEQRE RLLRAGGFLPP TPP PCV
Sbjct:  384 EAEFKAEFVETEGFRRIANASELEQREKRLLRAGGFLPPSTPPGPCV 430
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BLAST of mRNA_E_fasciculatus_S2_contig7597.15761.1 vs.
Match: Similar (to retinally abundant regulator of G-protein signaling hRGS-r n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS3_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 5.230e-12
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 QTNFQREFVETEGFRRIADASELEQRENRLLRAGGFLPPGTP 126
            +TNFQREFV TEGFRRIADASE+E RE RLLRAGG LP  +P
Sbjct:  220 ETNFQREFVTTEGFRRIADASEVEHREIRLLRAGGMLPSASP 261
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7597.15761.1 vs.
Match: RGS (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDM3_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 5.250e-12
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 QTNFQREFVETEGFRRIADASELEQRENRLLRAGGFLPPGTP 126
            +TNFQREFV TEGFRRIADASE+E RE RLLRAGG LP  +P
Sbjct:  251 ETNFQREFVTTEGFRRIADASEVEHREIRLLRAGGMLPSASP 292
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7597.15761.1 vs.
Match: RGS (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0N5_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 3.350e-11
Identity = 33/45 (73.33%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 QTNFQREFVETEGFRRIADASELEQRENRLLRAGGFLPPGTPPSP 135
            +TNFQR+FVETEGFRRI DASELEQRE RLLRA G L P    +P
Sbjct:  292 ETNFQRDFVETEGFRRIVDASELEQREMRLLRAEGVLVPSASTTP 336
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BLAST of mRNA_E_fasciculatus_S2_contig7597.15761.1 vs.
Match: Similar (to regulator of G-protein signaling 16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ7_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.190e-10
Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 QTNFQREFVETEGFRRIADASELEQRENRLLRAGGFLPPGTPPSP 135
            +TNFQR+F+ETEGFRRI DASELEQR+ RLLRA G L P    +P
Sbjct:  343 ETNFQRDFIETEGFRRIVDASELEQRQMRLLRAEGVLVPSASTTP 387
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BLAST of mRNA_E_fasciculatus_S2_contig7597.15761.1 vs.
Match: RGS (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIR7_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.630e-10
Identity = 31/42 (73.81%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 QTNFQREFVETEGFRRIADASELEQRENRLLRAGGFLPPGTP 126
            +TNF+R+FV TEGFRRI +AS+ EQRE RLLRAGG LP GTP
Sbjct:  128 ETNFRRDFVTTEGFRRILNASKQEQRELRLLRAGGMLPLGTP 169
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7597.15761.1 vs.
Match: Signal (transducer, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ5_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 5.700e-10
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 QTNFQREFVETEGFRRIADASELEQRENRLLRAGGFLPPGTPPSP 135
            +TNFQ +FVETEGFRRI +A+ELEQR+ RLL+A GFL P T  SP
Sbjct:  346 ETNFQTDFVETEGFRRIVNAAELEQRQIRLLQAEGFLLPNTGTSP 390
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7597.15761.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
Signal1.070e-2189.36transducer, putative n=1 Tax=Ectocarpus siliculosu... [more]
Uncharacterized3.610e-2185.11protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
RGS1.430e-1889.13domain-containing protein n=3 Tax=Ectocarpus TaxID... [more]
RGS6.020e-1780.85domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Similar5.230e-1278.57to retinally abundant regulator of G-protein signa... [more]
RGS5.250e-1278.57domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
RGS3.350e-1173.33domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Similar1.190e-1068.89to regulator of G-protein signaling 16 n=1 Tax=Ect... [more]
RGS1.630e-1073.81domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Signal5.700e-1068.89transducer, putative n=1 Tax=Ectocarpus siliculosu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7597contigE_fasciculatus_S2_contig7597:956..1099 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score91.7
Seed ortholog evalue1e-16
Seed eggNOG ortholog2880.D7FU04
Preferred nameRGS1
Model size144
KEGG koko:K16449
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001101,GO:0003674,GO:0004888,GO:0004930,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005886,GO:0006950,GO:0007154,GO:0007165,GO:0007186,GO:0008047,GO:0008150,GO:0009414,GO:0009415,GO:0009628,GO:0009719,GO:0009725,GO:0009737,GO:0009743,GO:0009746,GO:0009749,GO:0009756,GO:0009987,GO:0010008,GO:0010033,GO:0010035,GO:0010182,GO:0012505,GO:0016020,GO:0023052,GO:0030234,GO:0030695,GO:0031090,GO:0031410,GO:0031982,GO:0033993,GO:0034284,GO:0038023,GO:0042127,GO:0042221,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051336,GO:0051345,GO:0051716,GO:0060089,GO:0060589,GO:0065007,GO:0065009,GO:0070887,GO:0071310,GO:0071322,GO:0071944,GO:0097305,GO:0097708,GO:0098588,GO:0098772,GO:0098805,GO:1901700,GO:1901701
Exons1
EggNOG free text desc.Regulator of G protein signaling domain
EggNOG OGs2CNEE@1,2QVMV@2759
Cds size144
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842420.9176836-CDS-E_fasciculatus_S2_contig7597:955..10991696842420.9176836-CDS-E_fasciculatus_S2_contig7597:955..1099Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7597 956..1099 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7597.15761.1prot_E_fasciculatus_S2_contig7597.15761.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7597 956..1099 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7597.15761.1

>prot_E_fasciculatus_S2_contig7597.15761.1 ID=prot_E_fasciculatus_S2_contig7597.15761.1|Name=mRNA_E_fasciculatus_S2_contig7597.15761.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=48bp
QTNFQREFVETEGFRRIADASELEQRENRLLRAGGFLPPGTPPSPCV*
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mRNA from alignment at E_fasciculatus_S2_contig7597:956..1099+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7597.15761.1 ID=mRNA_E_fasciculatus_S2_contig7597.15761.1|Name=mRNA_E_fasciculatus_S2_contig7597.15761.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=144bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7597:956..1099+ (Ectocarpus fasciculatus EfasUO2)
CAGACCAACTTCCAGAGGGAGTTCGTAGAGACGGAGGGGTTCCGTCGAAT
CGCCGACGCGTCCGAGCTGGAGCAGCGAGAGAACCGTCTCCTGCGGGCCG
GGGGCTTCTTGCCACCAGGCACCCCGCCTTCACCCTGCGTGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7597:956..1099+

>mRNA_E_fasciculatus_S2_contig7597.15761.1 ID=mRNA_E_fasciculatus_S2_contig7597.15761.1|Name=mRNA_E_fasciculatus_S2_contig7597.15761.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=144bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7597:956..1099+ (Ectocarpus fasciculatus EfasUO2)
CAGACCAACTTCCAGAGGGAGTTCGTAGAGACGGAGGGGTTCCGTCGAAT
CGCCGACGCGTCCGAGCTGGAGCAGCGAGAGAACCGTCTCCTGCGGGCCG
GGGGCTTCTTGCCACCAGGCACCCCGCCTTCACCCTGCGTGTGA
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