mRNA_E_fasciculatus_S2_contig7576.15739.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7576.15739.1
Unique NamemRNA_E_fasciculatus_S2_contig7576.15739.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7576.15739.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX56_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 3.090e-18
Identity = 66/78 (84.62%), Postives = 68/78 (87.18%), Query Frame = 2 
Query:    5 GVSGPASSDISPSSQAPARTRSXXXXXXXXXXXXXXXXXXXXXSQVSGTPWYQDVKTWVGAASVACLTVFGVF--KQD 232
            GVSG  SSDISPSS+APA TRS XXXXXXXXXXXXXXXXX    QVSGTPWYQDVKTWVGAASVACLTVFGVF  K+D
Sbjct: 1048 GVSGSTSSDISPSSRAPAPTRSSXXXXXXXXXXXXXXXXXSPTGQVSGTPWYQDVKTWVGAASVACLTVFGVFAAKED 1125
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BLAST of mRNA_E_fasciculatus_S2_contig7576.15739.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX69_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 2.940e-15
Identity = 66/79 (83.54%), Postives = 68/79 (86.08%), Query Frame = 2 
Query:    2 VGVSGPASSDISPSSQAPARTRSXXXXXXXXXXXXXXXXXXXXXSQVSGTPWYQDVKTWVGAASVACLTVFGVF--KQD 232
            V VSGPASS ISP  QAPA+ RS  XXXXXXXXXXXXXXXXXXX QVSGTPWYQDVKT VGAASVACLTVFGVF  K+D
Sbjct: 1140 VEVSGPASSGISPGIQAPAQIRSSNXXXXXXXXXXXXXXXXXXXXQVSGTPWYQDVKTLVGAASVACLTVFGVFAAKED 1218
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BLAST of mRNA_E_fasciculatus_S2_contig7576.15739.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE2_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.020e-10
Identity = 28/31 (90.32%), Postives = 29/31 (93.55%), Query Frame = 2 
Query:  140 VSGTPWYQDVKTWVGAASVACLTVFGVFKQD 232
            VSGTPWYQDVKTWVGAASVACLTVFGVF  +
Sbjct:   91 VSGTPWYQDVKTWVGAASVACLTVFGVFVAN 121
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7576.15739.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNW8_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 4.870e-9
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 2 
Query:  140 VSGTPWYQDVKTWVGAASVACLTVFGVF--KQD 232
            VSGTPWYQDVKT+VGAASVACLTVFGVF  K+D
Sbjct:  416 VSGTPWYQDVKTFVGAASVACLTVFGVFASKED 448
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7576.15739.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC0_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 6.060e-8
Identity = 26/33 (78.79%), Postives = 29/33 (87.88%), Query Frame = 2 
Query:  134 SQVSGTPWYQDVKTWVGAASVACLTVFGVFKQD 232
            S+ S TPWYQDVKT+VGAASVACLTVFGVF  +
Sbjct:  671 SEGSRTPWYQDVKTFVGAASVACLTVFGVFHDE 703
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7576.15739.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV1_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 6.680e-6
Identity = 22/30 (73.33%), Postives = 25/30 (83.33%), Query Frame = 2 
Query:  143 SGTPWYQDVKTWVGAASVACLTVFGVFKQD 232
            S TPWYQDVKT+VGAAS+ CL VFGVF  +
Sbjct: 1008 SRTPWYQDVKTFVGAASLVCLAVFGVFHDE 1037
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7576.15739.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
LRR-GTPase3.090e-1884.62of the ROCO family n=1 Tax=Ectocarpus siliculosus ... [more]
LRR-GTPase2.940e-1583.54of the ROCO family n=1 Tax=Ectocarpus siliculosus ... [more]
Uncharacterized1.020e-1090.32protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.870e-987.88protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized6.060e-878.79protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
LRR-GTPase6.680e-673.33of the ROCO family n=1 Tax=Ectocarpus siliculosus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7576contigE_fasciculatus_S2_contig7576:2294..2969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size235
Hectar predicted targeting categoryother localisation
Exons2
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842418.8325484-CDS-E_fasciculatus_S2_contig7576:2293..24321696842418.8325484-CDS-E_fasciculatus_S2_contig7576:2293..2432Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7576 2294..2432 +
1696842418.845787-CDS-E_fasciculatus_S2_contig7576:2874..29691696842418.845787-CDS-E_fasciculatus_S2_contig7576:2874..2969Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7576 2875..2969 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7576.15739.1prot_E_fasciculatus_S2_contig7576.15739.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7576 2294..2969 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7576.15739.1

>prot_E_fasciculatus_S2_contig7576.15739.1 ID=prot_E_fasciculatus_S2_contig7576.15739.1|Name=mRNA_E_fasciculatus_S2_contig7576.15739.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=78bp
GWGFWSGLFRHQSEQPSTCPDQIEQPSTCTYRFEQPSTYGEHPFQPGFGD
AMVSGREDVGRRSQRGVSHRLWSIQAR*
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mRNA from alignment at E_fasciculatus_S2_contig7576:2294..2969+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7576.15739.1 ID=mRNA_E_fasciculatus_S2_contig7576.15739.1|Name=mRNA_E_fasciculatus_S2_contig7576.15739.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=676bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7576:2294..2969+ (Ectocarpus fasciculatus EfasUO2)
GGTTGGGGTTTCTGGTCCGGCCTCTTCCGACATCAGTCCGAGCAGCCAAG
CACCTGCCCGGACCAGATCGAGCAACCAAGCACCTGTACATACCGTTTTG
AGCAACCAAGCACCTACGGAGAGCATCCCTTCCAGCCAGGTACTGTTTCC
AAATGTCACAAGAATAGCTAGGGTACAAGCATATTCAGTTGCGATCGACA
ACAGCCGACGACTATATAGTTGAACGGTTTGATTTAGGCTTCTAATAAGA
CCTGTTGACGTATGTACATTTTCAAAAACAGAGCCGACATTGGGTGAATT
TCAGTCACTAAACCCAAAAGCTGCTTTGATAGTCTGCTTTCCACGGTTTT
CTACATTGCATCGGCTTCGCTCGCAAATTTCCGGTTCATTCTCGAGCATT
GCGTGGTGTCTCTTGGGCTACTGTCCCAAAATGTGTGTTTCGCTTCCGTA
GCTCACGTCGGTTAACTTTCCTGTCGACAGCACATCGAACGGCCGCGACC
AACAACGTCGATTAATACGCGTTCCTGTGGGTGAACGAGCCATCGCAAAC
TTACAACTGTTTTACTTATGATGTTGTACAGGTTTCGGGGACGCCATGGT
ATCAGGACGTGAAGACGTGGGTAGGCGCAGCCAGCGTGGCGTGTCTCACC
GTCTTTGGAGTATTCAAGCAAGATGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7576:2294..2969+

>mRNA_E_fasciculatus_S2_contig7576.15739.1 ID=mRNA_E_fasciculatus_S2_contig7576.15739.1|Name=mRNA_E_fasciculatus_S2_contig7576.15739.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=234bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7576:2294..2969+ (Ectocarpus fasciculatus EfasUO2)
GGTTGGGGTTTCTGGTCCGGCCTCTTCCGACATCAGTCCGAGCAGCCAAG
CACCTGCCCGGACCAGATCGAGCAACCAAGCACCTGTACATACCGTTTTG
AGCAACCAAGCACCTACGGAGAGCATCCCTTCCAGCCAGGTTTCGGGGAC
GCCATGGTATCAGGACGTGAAGACGTGGGTAGGCGCAGCCAGCGTGGCGT
GTCTCACCGTCTTTGGAGTATTCAAGCAAGATGA
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