mRNA_E_fasciculatus_S2_contig7523.15685.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7523.15685.1
Unique NamemRNA_E_fasciculatus_S2_contig7523.15685.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7523.15685.1 vs.
Match: Histone-lysine (N-methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU72_ECTSI)

HSP 1 Score: 341 bits (875), Expect = 3.390e-116
Identity = 175/220 (79.55%), Postives = 185/220 (84.09%), Query Frame = 1 
Query:    1 GVEVVGERHQAAVRLYNMVKRETAGTVLDVSALAQVTLIEGDFVDKWDEIKDCTVIYFNNERGWFKAPDGDPAKAKFSYEFKLVSLLQKLGRSVTLVTMEKMDPSPQAWTHTEHIFGKPNGDKRVATFAAGSLNFHFYKRMRQLDYNSPSVSRGDFTGRPAREQGARGAKSAPAPVLHSLPAPLFTPSWAFSDSTSLPTSTFKGSIAYENTSHIPTCARR 660
            GVEVV +RHQAAVRLYNMVKRETAGT LDVSALAQV LIEGDFVDKWDEIKDCTVIYFNNERGWFKAPDGDP KAK+SYE +LVSLLQ+LGRSVT+VTMEKMDPSPQ WTHTEHIFGKPNG+KRVATFAAGSLNFH YKRMRQLDY+  +      TG     +G    KS PA V  SL A L TPSWAFSDSTS PTST KGSIA EN +HIPTCARR
Sbjct:   64 GVEVVRDRHQAAVRLYNMVKRETAGTALDVSALAQVRLIEGDFVDKWDEIKDCTVIYFNNERGWFKAPDGDPTKAKYSYECQLVSLLQQLGRSVTMVTMEKMDPSPQGWTHTEHIFGKPNGEKRVATFAAGSLNFHLYKRMRQLDYSIRATRLHRATG---LSKGREVRKSVPALVFDSLAARLSTPSWAFSDSTSPPTSTIKGSIASENKNHIPTCARR 280
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BLAST of mRNA_E_fasciculatus_S2_contig7523.15685.1 vs.
Match: DOT1 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK39_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 7.780e-82
Identity = 125/139 (89.93%), Postives = 132/139 (94.96%), Query Frame = 1 
Query:    1 GVEVVGERHQAAVRLYNMVKRETAGTVLDVSALAQVTLIEGDFVDKWDEIKDCTVIYFNNERGWFKAPDGDPAKAKFSYEFKLVSLLQKLGRSVTLVTMEKMDPSPQAWTHTEHIFGKPNGDKRVATFAAGSLNFHFYK 417
            GVEVV +RHQAAVRLYNMVKRETAGT LDVSALA+V LIEGDFVDKWDEIKDCTVIYFNNERGWFKAP GDP KAK+SYE++LVSLLQ+LGRSVT+VTMEKMDPSPQ WTHTEHIFGKPNGDKRVATFAAGSLNFH YK
Sbjct:  420 GVEVVRDRHQAAVRLYNMVKRETAGTALDVSALARVRLIEGDFVDKWDEIKDCTVIYFNNERGWFKAPGGDPIKAKYSYEYQLVSLLQQLGRSVTMVTMEKMDPSPQGWTHTEHIFGKPNGDKRVATFAAGSLNFHLYK 558
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7523.15685.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Histone-lysine3.390e-11679.55N-methyltransferase n=1 Tax=Ectocarpus siliculosus... [more]
DOT17.780e-8289.93domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7523contigE_fasciculatus_S2_contig7523:41..3008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size663
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-25_002980.1
Cds size663
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842413.9485486-CDS-E_fasciculatus_S2_contig7523:40..1601696842413.9485486-CDS-E_fasciculatus_S2_contig7523:40..160Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7523 41..160 +
1696842413.9607172-CDS-E_fasciculatus_S2_contig7523:939..10201696842413.9607172-CDS-E_fasciculatus_S2_contig7523:939..1020Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7523 940..1020 +
1696842413.9721282-CDS-E_fasciculatus_S2_contig7523:1809..19581696842413.9721282-CDS-E_fasciculatus_S2_contig7523:1809..1958Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7523 1810..1958 +
1696842413.9821677-CDS-E_fasciculatus_S2_contig7523:2428..24951696842413.9821677-CDS-E_fasciculatus_S2_contig7523:2428..2495Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7523 2429..2495 +
1696842413.9933736-CDS-E_fasciculatus_S2_contig7523:2762..30081696842413.9933736-CDS-E_fasciculatus_S2_contig7523:2762..3008Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7523 2763..3008 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7523.15685.1prot_E_fasciculatus_S2_contig7523.15685.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7523 41..3008 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7523.15685.1

>prot_E_fasciculatus_S2_contig7523.15685.1 ID=prot_E_fasciculatus_S2_contig7523.15685.1|Name=mRNA_E_fasciculatus_S2_contig7523.15685.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=221bp
GVEVVGERHQAAVRLYNMVKRETAGTVLDVSALAQVTLIEGDFVDKWDEI
KDCTVIYFNNERGWFKAPDGDPAKAKFSYEFKLVSLLQKLGRSVTLVTME
KMDPSPQAWTHTEHIFGKPNGDKRVATFAAGSLNFHFYKRMRQLDYNSPS
VSRGDFTGRPAREQGARGAKSAPAPVLHSLPAPLFTPSWAFSDSTSLPTS
TFKGSIAYENTSHIPTCARR*
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mRNA from alignment at E_fasciculatus_S2_contig7523:41..3008+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7523.15685.1 ID=mRNA_E_fasciculatus_S2_contig7523.15685.1|Name=mRNA_E_fasciculatus_S2_contig7523.15685.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2968bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7523:41..3008+ (Ectocarpus fasciculatus EfasUO2)
GGGGTGGAGGTGGTCGGGGAACGTCACCAAGCCGCAGTCCGCCTCTACAA
CATGGTGAAGCGTGAGACAGCTGGCACAGTGCTGGACGTCAGTGCCCTCG
CACAAGTCACGCTGATAGAGGTGAGCCTACTTTTTTTTCCGATTCGATGC
ACAGGTTGTTATCGCACTTCGGGCTGACAAGACATTACTTGTCGTCGTTT
TTGTTGAGTGTCTGGCGGTATGCTTGTTGTGCCTGTCAAGCCGAAATAGG
TGAGCTCTTCTTGATGTATATCAATAGTCAATGTTTTTGTCGAGTGTTTG
GCGGTATGCTTGTTGTACCCGTCAAGCCGAAATAGGTGGCCGTGTTTTAG
TTTTTGTTTTAGGAAGAGTCGCTGTGCTACCGCCCTCTTGTGTGAGCCCG
GCTGACACGTCGATGTAAAACGAAGGGCGTACTGTACGCTGGCGCCAAGA
GAAAGATAGGGACAAAAGCACACACACACACACACACACGTGCCTTGGTC
GTGTTGAACCTGTTGTCTACGATGGAGTCCTCCTTAATGTGAAGACAACA
ACAACAACATAGATACCCGGGCGGGATGCATAGTAACGGCCCTGCCGCTC
GCTCGATGTCTCCTATTTCTGTGTTGGTGGTGGCGGCACGTCATTTAGTC
CTTTAGTCCCGCCGCCCTTTCTTTTTTTCGGAGGGTGCCGAGCGCTGGCC
GTTTGTTCTTTTTGGTTGCTGTTGTTTGTTTCGAAGCTATTAATAGTTGG
ACGTGGCCAGAAGCGCTTTTCTTCGAAGCATTCGACAGTCGCGTTTCTAA
GGCGGTAGTTGTTGGGAAGAGGTTAAAAACGAGTTGGAACGGAAGACACC
AGCGCCAAAACCATCACCAACAACAACAACAACGACAACGATGATACAGG
GGGATTTCGTGGACAAGTGGGATGAGATCAAGGACTGCACGGTCATCTAC
TTCAACAACGAGCGGGGCTGGTTCAAGGCGGTGAGGCACAGTTGTGATAT
ACCGTGCCCTGTCTGCGGGCGATCCTTCAACTTGGCGAGAGTCATTGCAT
ATAAACATAACATCCTGTTTCGTTTTGGTACTGACTCATATAAGTGCTGC
GGTTGTTAACGGCTTAGCGTACGTTGTTACTGTTTGGGAGACGGCCATCA
ACAGCTTAACGTACGTTGTAGCCGTCTGGGAGGTAGCTTGGATACATCCT
TCAACGCTATCCTGGGTCCGCTCTGCGCCCAACAAGACTTGGATCAGAGA
GTCCGAACACGGCTGACCCAGCGGGTTGCATGAGGTTGTTTGCCACCTCA
GACGATACCTACAAGGTGGCAAACAAACAAAACAACGTCCGCAGGGCGTT
GGACGTTGGAGGCAAGCACCGCACGAGGAAAAAGGGGAGGGGTAATGCTT
ATTTCCTCTTGTCGCGTGACTGACCCCGGTTGTTGCGTCAAACATGGCCC
CGAAAGGTGTGATGTGGGTCCCAGAATAGATTGGACGAAACACACACACA
ACACACCAAAAAGTGAAGGGTTGTGGCGCTATTGCGAGACACGGAAGTCC
TGAGCGAGCGGATGGAATGGTACAAAACGCTACGTCACCAGAGCACCCGG
ATGTTGGCAGGGTCTCTCCATATCAGGAGGAAATAACAGTGTTTTCGACT
CAACATCTAGTGACTTAGGTAGCATGAAATGGGTATTGTGCCACCCCCGA
CCCTGCTCCGTCCTCTCGAGGACGCGTGGTCAATGGTCTAACGACTAGAC
ACCGCCTTGCGTCTCACAGCCGGATGGAGATCCCGCCAAGGCGAAGTTCA
GCTACGAGTTCAAGCTTGTGTCGCTGCTTCAGAAGCTAGGGAGGTCTGTG
ACCCTCGTGACGATGGAGAAGATGGACCCGTCTCCGCAGGCCTGGACTCA
CACCGAGCACATCTTCGGGTGCGAATATGCAGATGCGCTTTGGTCGTTGC
TACTGGTGTAGTGTGGTTACGTGGAATCTGTTTTCACCTCGTCGTAGACA
TCGTTGTCGTTGCTGTGTTTGTTGTTGTTGTTTGCGTTGGTGCTGTTGCT
GTTGTGTGATGGTGTTGTTTTTTTGTTTTTTTTGTTGACGCTGTTGCTGT
TGTGTGTTGCTGTTGCTGTTGGGATGGTGACTAGCGTGTGCCGTGGCTCT
TTGCCCGGGGCAGGGGATGCATTACCAGTCAGGTAGGCGTTCTTTCTAAA
GCACCTCTGGAGTTTTGGGCGACTCTTCCTTCAGATGTCGATTGCTGTGC
TTCACATATGCGTTGCATTGACGTCCCTTCCCTCCAACCCCCCCTCCGAG
CTGCGGTTTACTCTTGTCAACACCAGCCCCCCTCTTACTGATGCCCTAAC
GGGGATCGTAAATCGTCCCCGCGTTATCTCCTCAACAGCAAGCCCAATGG
CGACAAGCGGGTGGCCACATTCGCTGCGGGCTCGCTCAACTTCCACTTCT
ACAAGGTATGGGAAATGTGACTTACCACTGCTGGTTCATGGTACGGTTAT
GGGACATGCTGGCTGTTCGTGGTACGGTAGTGGTTCCTGTATACGACCGC
ATACATGTGCTGAGGGAAATGGCAGGGCTTCTACGGGGTACTCGGCACTG
CTGTGCAGAGAATGAGACAGCTTGACGATTCCGTACCACATGCTGACTGT
TCGTGGTACGGTAGTGGTTTCTGTATACGTTAGTGGCAGGCCTTCTACGG
GGCACCCGGCACTGCTGTGCAGAGAATGAGACAGCTTGACTACAATAGTC
CATCCGTGTCACGCGGCGACTTCACCGGGCGACCGGCCCGTGAGCAAGGG
GCGAGAGGTGCGAAATCGGCCCCCGCCCCCGTCCTCCATTCGCTTCCAGC
CCCACTTTTCACCCCATCTTGGGCCTTCAGTGACTCGACCTCTCTGCCTA
CGAGCACATTCAAAGGATCGATCGCCTATGAGAATACGAGTCACATTCCA
ACCTGCGCCCGCCGCTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7523:41..3008+

>mRNA_E_fasciculatus_S2_contig7523.15685.1 ID=mRNA_E_fasciculatus_S2_contig7523.15685.1|Name=mRNA_E_fasciculatus_S2_contig7523.15685.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=663bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7523:41..3008+ (Ectocarpus fasciculatus EfasUO2)
GGGGTGGAGGTGGTCGGGGAACGTCACCAAGCCGCAGTCCGCCTCTACAA
CATGGTGAAGCGTGAGACAGCTGGCACAGTGCTGGACGTCAGTGCCCTCG
CACAAGTCACGCTGATAGAGGGGGATTTCGTGGACAAGTGGGATGAGATC
AAGGACTGCACGGTCATCTACTTCAACAACGAGCGGGGCTGGTTCAAGGC
GCCGGATGGAGATCCCGCCAAGGCGAAGTTCAGCTACGAGTTCAAGCTTG
TGTCGCTGCTTCAGAAGCTAGGGAGGTCTGTGACCCTCGTGACGATGGAG
AAGATGGACCCGTCTCCGCAGGCCTGGACTCACACCGAGCACATCTTCGG
CAAGCCCAATGGCGACAAGCGGGTGGCCACATTCGCTGCGGGCTCGCTCA
ACTTCCACTTCTACAAGAGAATGAGACAGCTTGACTACAATAGTCCATCC
GTGTCACGCGGCGACTTCACCGGGCGACCGGCCCGTGAGCAAGGGGCGAG
AGGTGCGAAATCGGCCCCCGCCCCCGTCCTCCATTCGCTTCCAGCCCCAC
TTTTCACCCCATCTTGGGCCTTCAGTGACTCGACCTCTCTGCCTACGAGC
ACATTCAAAGGATCGATCGCCTATGAGAATACGAGTCACATTCCAACCTG
CGCCCGCCGCTAG
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