mRNA_E_fasciculatus_S2_contig7496.15658.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7496.15658.1
Unique NamemRNA_E_fasciculatus_S2_contig7496.15658.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7496.15658.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMK9_ECTSI)

HSP 1 Score: 266 bits (681), Expect = 1.210e-85
Identity = 181/250 (72.40%), Postives = 187/250 (74.80%), Query Frame = 1 
Query:    1 MPPTDCFDDAGASCASMGGVPESGLLPTTRSPIHHGTDPDLSAPTPSPSGVAATGLDLSPVMGPTPTVIVTKAKRKLRGSPARGGGCGGGPVSPMAARLSRGFPPSSIRPNANNIRGGVSNPS-PHGGGXXXXXTQGDXXXXXXAAEGEAPR------GEAGGLDDKEGPPSLAPLGSAAPSARVAAAATPTPESAAGLATSAEASRSCGARQXXXXXXXXXK--QENLKDMMLKARKASDNIRLLLHAK 723
            MPPTDCFDDAGASCASM GVPE GLLPTTRSP+HHGTDPDLSAPTPSPSGVAATGLDLSPVMGPTPTV VTKAKRKLRGSPARGGGCGGGPVSPMA RLSRGFPPSSIRPN     G  SNPS PH GG XXXX    XXXXXX   GEA +      G  G LDDK+GPPSLAPLGS APS RVAA                          XXXXXXXXX   Q ++KDMMLKA+KASDNIRLLLHAK
Sbjct:    1 MPPTDCFDDAGASCASMSGVPEPGLLPTTRSPLHHGTDPDLSAPTPSPSGVAATGLDLSPVMGPTPTVFVTKAKRKLRGSPARGGGCGGGPVSPMATRLSRGFPPSSIRPNTTGFSG-ASNPSTPHRGGSXXXXXXXXXXXXXXXXXGEATQQRLGAGGTGGLLDDKDGPPSLAPLGSVAPSTRVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVDIKDMMLKAKKASDNIRLLLHAK 249
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7496.15658.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML0_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 2.470e-15
Identity = 39/50 (78.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:  787 MRGCHLSRGAGCNNAKCVQAQKLLRHYAECNRKRAPCGAYCPGCPPVARS 936
            MRGCHL+RGAGC+NAKC QAQK+LRHYAECNRKRA  G YC  C  VARS
Sbjct:    1 MRGCHLTRGAGCSNAKCAQAQKMLRHYAECNRKRALGGRYCLVCSLVARS 50
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7496.15658.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.210e-8572.40protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.470e-1578.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7496contigE_fasciculatus_S2_contig7496:2902..7492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size948
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionZinc finger, TAZ-type
Ec32 orthologEc-05_003120.1
Cds size948
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842411.390107-CDS-E_fasciculatus_S2_contig7496:2901..29541696842411.390107-CDS-E_fasciculatus_S2_contig7496:2901..2954Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7496 2902..2954 +
1696842411.4004605-CDS-E_fasciculatus_S2_contig7496:3294..34361696842411.4004605-CDS-E_fasciculatus_S2_contig7496:3294..3436Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7496 3295..3436 +
1696842411.4102418-CDS-E_fasciculatus_S2_contig7496:4139..46671696842411.4102418-CDS-E_fasciculatus_S2_contig7496:4139..4667Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7496 4140..4667 +
1696842411.422022-CDS-E_fasciculatus_S2_contig7496:6598..67531696842411.422022-CDS-E_fasciculatus_S2_contig7496:6598..6753Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7496 6599..6753 +
1696842411.433449-CDS-E_fasciculatus_S2_contig7496:7422..74921696842411.433449-CDS-E_fasciculatus_S2_contig7496:7422..7492Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7496 7423..7492 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7496.15658.1prot_E_fasciculatus_S2_contig7496.15658.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7496 2902..7492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7496.15658.1

>prot_E_fasciculatus_S2_contig7496.15658.1 ID=prot_E_fasciculatus_S2_contig7496.15658.1|Name=mRNA_E_fasciculatus_S2_contig7496.15658.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=316bp
MPPTDCFDDAGASCASMGGVPESGLLPTTRSPIHHGTDPDLSAPTPSPSG
VAATGLDLSPVMGPTPTVIVTKAKRKLRGSPARGGGCGGGPVSPMAARLS
RGFPPSSIRPNANNIRGGVSNPSPHGGGSSCCITQGDASSSSAAAEGEAP
RGEAGGLDDKEGPPSLAPLGSAAPSARVAAAATPTPESAAGLATSAEASR
SCGARQQQQQQPQQKKQENLKDMMLKARKASDNIRLLLHAKRCDGRSCQV
PGCESARQLVAHMRGCHLSRGAGCNNAKCVQAQKLLRHYAECNRKRAPCG
AYCPGCPPVARSPPPN
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mRNA from alignment at E_fasciculatus_S2_contig7496:2902..7492+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7496.15658.1 ID=mRNA_E_fasciculatus_S2_contig7496.15658.1|Name=mRNA_E_fasciculatus_S2_contig7496.15658.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4591bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7496:2902..7492+ (Ectocarpus fasciculatus EfasUO2)
ATGCCTCCGACCGACTGCTTCGACGACGCGGGTGCAAGCTGTGCATCCAT
GGGGTGGTGAGTGGCGAAAAACCTGCAGATTCGTCCAGAGAGTTGTTTGT
TTTGTCTGGACCGCACGCCATACGCTGGCTTGAAACACGGCAGACAGAGC
TGCGTCTGTCTGTGTTGCATTTGCTGTCCCTCCCTGTCTTGCCTGGTGCA
CGGAAAGGGTTCCAACTCAGAGGTGTTCTCCCTTGCTCCCTTCCCCTCGG
CAACCTCAGCGTCAAGCCCCATGCGGTGCTGCGTTATGCAGTGCTGTCGT
GTAAACACCAAAAGCACCCGAATCTCAAACCCGGTTTTTTGTTTTTTTCT
TTGCCCTCCTCCTCTCCCTCCGCGGCTCTCTGTTTTTTTTCAGCGGTGTT
CCCGAGTCGGGGCTGTTGCCCACGACAAGGTCGCCAATCCATCATGGTAC
TGACCCTGACCTCTCAGCTCCCACTCCCTCGCCTTCGGGAGTCGCGGCTA
CGGGGCTCGACTTGTCCCCCGTGATGGGACCAACGGTGAGCAAGGGATAC
AGCAGCGGGTGTCGGGAAGTCGTCTGTTTTTCCAACAAAGCAGGCCGCAG
CAGCAGCAGCAGCAGCAGGCAAACCTGCAGCAGTCTCTCCGTTTGTTTTC
TTTGAGGAAAATTAACTCAGAGAGAGAGCACTCCACCCCACTTGAAGGGC
CGCGATTTGAATCAGAACCTATCTTGCGGATGCGTGGCGTGCGCTTCTGC
TGCGCCGGGTGCGTTCAGATTGCACTTTTGTTCGCGTGGTTGGCCACGGC
TTGCTGCCCCCCCCTGTGTGATGGTGAGCCTTTCGAACCCGTCATGCATA
CACCCAACCATGCCCCCTTTGCTGTGTTGCGAGTCTTTCGGAAGCATCCA
TCGAAAAATATGATGCATCTTTGCTTCGATCTGTCCCAGAAAACCTCGAC
ACGCACCAACGCGCACGAAGCGGGCCCCCACGCCACACCGAGGGGAGGAG
CGGTTGTGTGGCGTCTACCACTATCTGTGCGCTTATGCACAGCCAGCCGT
GCCATGCTATCAATTGCACAAGCGACACGCACGCGCCAATACATGTGCCA
CACACAACCACACCGCCCGCAGCCGGAGCGATTGATTTTTTTCCTGTGCG
CCAACAAGCTGATGATGTGGGTTGTTTTTGTGCAACAAACCGCCCCCCCC
CTCTTCGTCCCCCCTCTGTTTCTTCCTTGACCGAACAGCCCACTGTTATC
GTGACCAAGGCAAAGCGGAAGCTGCGAGGAAGCCCGGCGAGAGGAGGGGG
CTGCGGCGGAGGCCCCGTCTCTCCCATGGCCGCCCGGCTCTCGAGAGGCT
TTCCTCCCTCGAGCATCAGACCCAACGCTAACAATATCCGTGGAGGGGTG
TCAAACCCATCACCACACGGCGGCGGCAGCAGCTGTTGCATCACACAAGG
CGACGCTTCGTCGTCGTCGGCAGCCGCTGAAGGCGAGGCACCACGGGGAG
AGGCGGGGGGGCTGGACGACAAGGAGGGACCGCCCTCGCTTGCTCCTCTC
GGGAGCGCTGCTCCTAGCGCCAGGGTCGCGGCCGCCGCCACTCCGACCCC
GGAGAGTGCCGCGGGTCTCGCGACCAGTGCCGAAGCCAGCCGCAGCTGCG
GGGCGCGACAGCAGCAGCAGCAGCAGCCTCAGCAAAAGAAGCAAGAGAAC
CTCAAGGACATGATGCTCAAGGCCAGAAAAGCCTCGGACAACATCCGCCT
GCTACTGCACGCGAAGGTGAGAACTGCCTACATAGTTGTCTCTCGGGGAA
CCAAGGCTTCGTACATCCACCGCTCGCGCGTGTGTGCGGGACCATCGGTA
CCACTCTTGCTGGCTCTTTTTTTTTCCATCCATGGGAGTCAGGCAGTCTG
CATGGGGTAGTTGGTCCCGTCCTGTTATGCCCCCCCCCCCCCCCCCCCCC
TCTCCCCTCGCCCTATGCTTTCTTCTTCGTGTTGGTTGGGTGTTCGTGGT
TTGTTGGGGTTTGGTGGGTTTGGGGGGTTTGGTTNNNNNNNNNNTGGGGG
AGTGGGCCCCCTCCCGTTATCCCCCCCCCCCCCCCTGCGTCTTCGCCCCC
GTGTTTCGATTTTGTCGTGCGCGTGAGCTGCTGTGCCAGTGGTAATGCGC
ATGTAGGTGATGTGTCGCTCCCCATCAGCGAGGAATTAAATAATTAAATT
GCATCTACAGATCTACCATATCCACCTACGTAGGTCCCCGTGGTTGGTTT
ACCCGCCCGCGATTTTTTTTTTTATTGTTCGAAAAATTATACTACCACAG
AAGTTGAAATGCTCGGGATTGTTTCCCCGGAAAATTTTAGGCCGGCAGCC
AGGCCATCTGGCACCCCCACACCCCCGTTCATGTCGCGTCTTTGGGGTGG
TGCTCCGGTTGTGCGTACGCTACCGTCTGGCAGCACGCCGTCTCTATTCC
GTTCTACCCCGAGACCGGAGTCGGCACCGGTCGTGCCGCCCATGGCTGGG
GTTTGCAAATGCAACCGAACGTTTCTGTTGAGACGGAGACACGCCGGGCG
GGTGCCACCGTCATGCATGTATGCATACATACCCCATCGCCCCGTATCTC
TCTCACACACTGCAACACATGGACAAAGTTCGTCCACGCAGAATATTATC
CTTTTGTTGTTTGCTGGAAAGAATTTTTAACGTATGCATACGTAGCCTCA
ACTCTCCGTGCTGTGGAATATCTTGAGTGATCGTCCGACCCAAAGAAAAC
GTGAAATGTTTTGGCATGATTTGTTGCTTGGTTCGTGATGGGAGATGGCA
TTGCGGCGGGTGTGTGGGGGAGGACAACATATCGTGGTACACGTTGTTGT
GTGCGTGTTGTTCCCAGCTGGGCTTTGAGATACGGCGAATGATGTCCTAC
CAACGGGTTGAACGCGTTCTAAATTTACATTCTAGGTCAGATCTTTGTAC
CCGCCGCTCGTCACACAAGAGACGCAGGAAAGGTTGACCACAAGAGTTAG
CATGGCACTTTGGTTGTAACCATAGCTGCATGTTGATGTGCGATGTTGGG
TTGTTTTCCTTTTCTCGCTCTACAAATCGAAACTGGAAACTTTGTCTGTT
TCGTGTTTATCATCCTTGGATAGTTCATCCTTGGATGTGTTTGGGATATC
TGCACAACGAGTACAGCAGCCTTTGATCAGAACACATCCAACAAGAGCAG
GAGTCCTTTCAATATACTGGTGGGTTGGATGGATGCAGGATACTTCGGTC
TCAATTATCTTCGCGATGGATTGGTTTGCAGCAGTGGGGTGAGAATCTGC
CTGCTGCCAACGGTCTCGCCTGGAATAAAATGGCCGAGGGGCTGGTTGGC
GATAGCGATATGGGGGATATCAGATATACTTTCCCCGACGTCTGCCACAC
CAACGCAAACTGCATGCTTATGCTTTCATCACATGCAGATGAAATTTGCT
TAACAGCAGTAGTCGCCCACCGCAGGCTGGCTGATTCCCCAATGAGACTT
GACTTACCCCTCCAGTTAACAAGCTGCGGTTGCAGGACAGCGTGTTCCAT
TTTGTGGCTTGTCTACATATGCATAGCGTGGCATTGCAAAACTGAAGTGA
ATCCATTCTCTTCTTGCTACTGTACCCGTTCGTTCTGTGGCTTCCTGGCT
GGTGTGGCGGCGGCGGGTGCGCGGTATCTCCGGTACCTCGATTCCAGCGG
TGCGATGGCCGCTCCTGCCAAGTGCCAGGGTGCGAGTCTGCCCGGCAACT
CGTCGCGCACATGCGGGGCTGCCACTTGAGTCGGGGCGCCGGGTGCAACA
ACGCCAAGTGCGTTCAGGCCCAGAAGCTGCTCCGCCACTACGCCGAGTGC
AAGTGAGTTCCACGGGCAGCACTACCGCCTTTTACAGCACACGCGTTCTT
GTCACGCACACTGGGATTCTGAGATGGTTGTAGCGTCGCATGACGGTACT
GCACCGGTGGTGTTAAGGACTGCGGGCACCGCTCACACAAAAATCGGATG
CCCGATGCGAGTTGCGTGAGTACTTTGTACGCCGATGATCACCAATGGAG
GCAGTAGATCGCTCCCGCTGGTGCGGTTCAGTAGTGGGTGATAGCAACGT
CATGAGAGCAGAGAGCAGGTGACGAGGCATTACACCCCCTGGACCGGTTT
GTGCAAGCTGGAGAGATTCGCGGTGCCGGGAATGGCGGCGTTGGAACTTT
CCGTCCATAAGCTTTCCGTTAACGTACGGTTCGATTTGTGCATCCCCTTC
AACGTGAGGTAACTGGTAACTGGCCTTTGAAAATAATTGGTCCAGGGGGT
GTGGTATCTTGCGTCACCTACACACGTGTTGTTTCGACCAGGGTTGCTTG
CCATTCTGGCAGGTGTAGGCTCATGAATTGTCTTCATGTTTTCGAGGCTG
TCCCTGTTCGCGTTCCCACCTACTTGTATAGCTTTGTACGAGTAACCCCC
CCTCTCCGCCTCCCCTTGACCTGACTCTCGCAACGGACCTCCCCCCCCCC
CCCCCTCCCCCCCCAAAACAGCCGCAAAAGGGCCCCTTGCGGGGCCTACT
GCCCGGGCTGCCCCCCGGTCGCTCGCTCCCCCCCCCCCAAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7496:2902..7492+

>mRNA_E_fasciculatus_S2_contig7496.15658.1 ID=mRNA_E_fasciculatus_S2_contig7496.15658.1|Name=mRNA_E_fasciculatus_S2_contig7496.15658.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=948bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7496:2902..7492+ (Ectocarpus fasciculatus EfasUO2)
ATGCCTCCGACCGACTGCTTCGACGACGCGGGTGCAAGCTGTGCATCCAT
GGGCGGTGTTCCCGAGTCGGGGCTGTTGCCCACGACAAGGTCGCCAATCC
ATCATGGTACTGACCCTGACCTCTCAGCTCCCACTCCCTCGCCTTCGGGA
GTCGCGGCTACGGGGCTCGACTTGTCCCCCGTGATGGGACCAACGCCCAC
TGTTATCGTGACCAAGGCAAAGCGGAAGCTGCGAGGAAGCCCGGCGAGAG
GAGGGGGCTGCGGCGGAGGCCCCGTCTCTCCCATGGCCGCCCGGCTCTCG
AGAGGCTTTCCTCCCTCGAGCATCAGACCCAACGCTAACAATATCCGTGG
AGGGGTGTCAAACCCATCACCACACGGCGGCGGCAGCAGCTGTTGCATCA
CACAAGGCGACGCTTCGTCGTCGTCGGCAGCCGCTGAAGGCGAGGCACCA
CGGGGAGAGGCGGGGGGGCTGGACGACAAGGAGGGACCGCCCTCGCTTGC
TCCTCTCGGGAGCGCTGCTCCTAGCGCCAGGGTCGCGGCCGCCGCCACTC
CGACCCCGGAGAGTGCCGCGGGTCTCGCGACCAGTGCCGAAGCCAGCCGC
AGCTGCGGGGCGCGACAGCAGCAGCAGCAGCAGCCTCAGCAAAAGAAGCA
AGAGAACCTCAAGGACATGATGCTCAAGGCCAGAAAAGCCTCGGACAACA
TCCGCCTGCTACTGCACGCGAAGCGGTGCGATGGCCGCTCCTGCCAAGTG
CCAGGGTGCGAGTCTGCCCGGCAACTCGTCGCGCACATGCGGGGCTGCCA
CTTGAGTCGGGGCGCCGGGTGCAACAACGCCAAGTGCGTTCAGGCCCAGA
AGCTGCTCCGCCACTACGCCGAGTGCAACCGCAAAAGGGCCCCTTGCGGG
GCCTACTGCCCGGGCTGCCCCCCGGTCGCTCGCTCCCCCCCCCCCAAC
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