mRNA_E_fasciculatus_S2_contig7468.15634.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7468.15634.1
Unique NamemRNA_E_fasciculatus_S2_contig7468.15634.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7468.15634.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAT6_ECTSI)

HSP 1 Score: 672 bits (1733), Expect = 7.930e-241
Identity = 349/405 (86.17%), Postives = 368/405 (90.86%), Query Frame = 1 
Query:    1 MEDASAVLSPSK----STDGRQDFTSDTANGKRARIGTIHRPWYEKISCCCGIDRSDNSGRSRRGLMISGACLTAGIVLELIATLWAFRQAVQAGGLDGQANCDEDGFLFMQHLSVVTQEMCSQQVDSDLFLSETGLGGDYDPCESTNSGDSSSFLEVCSCSTDIVFDASACAWVALQNSSGVVSNDAGCLARAVEPEFPYSFVPTFGLSECWPANPTGTAELTVTALVVALGSQLMEAVVGFRYLKDPSRGTLLLAAASAAAACGVVAVASVLLSLPSFYAYREGYPTEVATFWLVWAAAGGAAVGALAEFLGTEFFVAEGRLPYLGAFGNGLVWLGSAAMEVIVASFLVWEGERVTTWELLRDGVVGLVTVEIAALLAMWAARFLWTRAKLLLAAKGRRGADD 1203
            ME+AS  LSPSK    STDGRQD TSDTANGK   +G        +IS C GIDRSD SGRSRRGL+ISGACL AGIVLELIATLWAFRQAV+AGGLDGQANCDEDG LFMQ LSVVTQE+CSQ++DSD+FLSETGLGGDYDPCESTNSGD+SSFLEVCSCSTDIVFDA AC+WVALQNSSGVVSN AGCLARAVE EFPYSF+PT G SECWPANPTGTAELTVTALVVALGSQL+E VVGFRYLKDPSRGTLLLAAASAAAACGVV VASVLLSLP FYAYR+GYPTEVATFWLVWAAAGGAAVGALAE L TE+F+ +GRLPYLGAFGNGLVWLGSAAMEVIVASFLVWEGERVTTWELLRDGV+GLVTVE+A LLAMWAARFLWTRAKLLLAAKGR GADD
Sbjct:   62 MEEASVALSPSKKSNKSTDGRQDNTSDTANGKGHVLG--------RISGCRGIDRSDISGRSRRGLIISGACLAAGIVLELIATLWAFRQAVEAGGLDGQANCDEDGILFMQQLSVVTQEVCSQRIDSDMFLSETGLGGDYDPCESTNSGDTSSFLEVCSCSTDIVFDAPACSWVALQNSSGVVSNYAGCLARAVEVEFPYSFIPTIGRSECWPANPTGTAELTVTALVVALGSQLIELVVGFRYLKDPSRGTLLLAAASAAAACGVVTVASVLLSLPGFYAYRKGYPTEVATFWLVWAAAGGAAVGALAELLATEYFLTKGRLPYLGAFGNGLVWLGSAAMEVIVASFLVWEGERVTTWELLRDGVIGLVTVELAGLLAMWAARFLWTRAKLLLAAKGRTGADD 458
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BLAST of mRNA_E_fasciculatus_S2_contig7468.15634.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM5_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 9.300e-23
Identity = 109/371 (29.38%), Postives = 165/371 (44.47%), Query Frame = 1 
Query:  178 RGLMISGACLTAGIVLELIATLWAFRQAVQAGGLDGQANCDEDGFLFMQHLSVVTQEMCSQQVDSDLFLSETGLGGDYDPCESTNSGDSSSFLEVCSCST-DIVFDASACAWVALQNSSGVVSNDAGCLARAV-------EPEFPYSFVPTFGLSE------CWPANPTGTAELTVTALVVALGSQLMEAVVGFRYLKDPSRGTLLLAAASAAAACGVVAVASVLLSLPSFYAYREG------------YPTEVATFWLVWAAAGGAAVGALAEFLGTEFFVAEGRLPYLGAFGNGLVWLGSAAMEVIVASFLVW---------EGERVTTWELLRDGVVGLVTVEIAALLAMWAARFLWTRA-KLLLAAK 1182
            RG+  + A L+ G+ LE+ AT W   QA+ +G  D +A+C     L + H   +    C Q   S ++  E      +  C      +     ++C C+  D V  ++ C W +  ++   +  +  C+A  V       + E+  ++      SE      C P +P G  ++T+  LVV+L  +L+EA VG++  ++P     L+  AS     G+ ++  +L  LP      E             Y   V TF            G LAE +   +F A GR  YLG  GN L WL SA  EV+V ++LVW         E     TW +L   V+GLV +E+AALL +W AR L  RA   LL AK
Sbjct:   39 RGMKHAAAFLSLGLFLEIGATFWTLAQAIASGVFD-EADCGVRA-LSLYHNDRLPSN-CEQLDSSVVWFDEDRTVSTFTSCSGL---EDPPIDQLCDCARYDRV--STGCTWTSASSTRDEI--EGLCVAVPVIALTSDLQEEYGTTYDWLLDSSELEYQDDCRPLSPEGFGDITIALLVVSLSLELVEAYVGYKRWRNPLSVRGLVVVASVLEGVGLFSIWCLLRFLPGGILETEVSENQYKFLNIMLYGVLVVTFG-----------GTLAEIV--FYFSAPGRFRYLGVLGNSLTWLASALTEVVVTAYLVWRLQWWENADETADEETWPVLVAAVIGLVVLEVAALLVLWIARVLIARATSALLTAK 386
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7468.15634.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized7.930e-24186.17protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized9.300e-2329.38protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7468contigE_fasciculatus_S2_contig7468:4725..5936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1212
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_006430.1
Cds size1212
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842408.8552172-CDS-E_fasciculatus_S2_contig7468:4724..59361696842408.8552172-CDS-E_fasciculatus_S2_contig7468:4724..5936Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7468 4725..5936 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7468.15634.1prot_E_fasciculatus_S2_contig7468.15634.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7468 4725..5936 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7468.15634.1

>prot_E_fasciculatus_S2_contig7468.15634.1 ID=prot_E_fasciculatus_S2_contig7468.15634.1|Name=mRNA_E_fasciculatus_S2_contig7468.15634.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=404bp
MEDASAVLSPSKSTDGRQDFTSDTANGKRARIGTIHRPWYEKISCCCGID
RSDNSGRSRRGLMISGACLTAGIVLELIATLWAFRQAVQAGGLDGQANCD
EDGFLFMQHLSVVTQEMCSQQVDSDLFLSETGLGGDYDPCESTNSGDSSS
FLEVCSCSTDIVFDASACAWVALQNSSGVVSNDAGCLARAVEPEFPYSFV
PTFGLSECWPANPTGTAELTVTALVVALGSQLMEAVVGFRYLKDPSRGTL
LLAAASAAAACGVVAVASVLLSLPSFYAYREGYPTEVATFWLVWAAAGGA
AVGALAEFLGTEFFVAEGRLPYLGAFGNGLVWLGSAAMEVIVASFLVWEG
ERVTTWELLRDGVVGLVTVEIAALLAMWAARFLWTRAKLLLAAKGRRGAD
DND*
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mRNA from alignment at E_fasciculatus_S2_contig7468:4725..5936-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7468.15634.1 ID=mRNA_E_fasciculatus_S2_contig7468.15634.1|Name=mRNA_E_fasciculatus_S2_contig7468.15634.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1212bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7468:4725..5936- (Ectocarpus fasciculatus EfasUO2)
ATGGAAGATGCTTCTGCCGTCCTGTCACCGTCCAAGAGCACCGATGGGAG
ACAAGATTTTACGAGCGACACCGCCAATGGCAAACGGGCACGTATCGGGA
CAATTCATCGCCCTTGGTATGAGAAAATTTCATGCTGCTGCGGAATTGAT
CGCAGTGACAATAGCGGCCGGAGCCGTCGTGGGCTCATGATTTCTGGGGC
ATGCTTGACAGCCGGAATCGTATTGGAGCTGATCGCGACCCTCTGGGCGT
TCCGCCAAGCCGTCCAAGCAGGGGGTCTGGATGGTCAGGCCAATTGCGAT
GAGGATGGATTTTTGTTTATGCAACATCTCAGCGTTGTCACGCAGGAGAT
GTGCAGCCAACAGGTCGATTCGGATCTGTTCCTGAGTGAAACAGGTTTAG
GCGGCGACTACGACCCTTGCGAATCCACGAATTCCGGGGACAGTTCATCA
TTTCTGGAGGTGTGTAGCTGCTCGACCGATATTGTTTTTGATGCGTCTGC
TTGTGCTTGGGTGGCTCTCCAAAATTCGAGCGGCGTTGTTTCGAACGACG
CTGGCTGCCTAGCGCGAGCAGTCGAACCCGAGTTTCCGTATTCCTTCGTA
CCAACGTTCGGTCTTTCCGAGTGTTGGCCGGCAAACCCTACCGGCACAGC
CGAGCTTACCGTGACCGCTCTGGTGGTAGCCCTGGGCAGTCAGCTAATGG
AGGCGGTGGTGGGCTTCCGGTACCTGAAGGACCCGTCCCGCGGCACCCTT
CTCCTCGCGGCGGCGTCAGCCGCCGCCGCTTGTGGGGTAGTGGCAGTGGC
ATCGGTGCTTCTATCACTCCCCAGCTTCTACGCCTACAGGGAAGGCTACC
CCACCGAGGTAGCGACGTTTTGGCTGGTGTGGGCAGCAGCCGGCGGCGCG
GCCGTGGGTGCCTTGGCAGAGTTTCTGGGTACGGAATTCTTCGTGGCGGA
AGGCCGGCTGCCGTACCTCGGCGCGTTCGGTAATGGGCTCGTCTGGCTGG
GCTCGGCGGCAATGGAGGTAATCGTCGCGTCGTTCCTTGTCTGGGAAGGG
GAGCGGGTCACGACCTGGGAACTCCTGAGAGACGGAGTTGTTGGTCTGGT
CACCGTCGAGATAGCCGCTTTGCTGGCGATGTGGGCCGCACGCTTTTTGT
GGACCAGGGCCAAGCTACTGTTGGCGGCCAAGGGGCGAAGGGGGGCGGAT
GATAATGACTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7468:4725..5936-

>mRNA_E_fasciculatus_S2_contig7468.15634.1 ID=mRNA_E_fasciculatus_S2_contig7468.15634.1|Name=mRNA_E_fasciculatus_S2_contig7468.15634.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1212bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7468:4725..5936- (Ectocarpus fasciculatus EfasUO2)
ATGGAAGATGCTTCTGCCGTCCTGTCACCGTCCAAGAGCACCGATGGGAG
ACAAGATTTTACGAGCGACACCGCCAATGGCAAACGGGCACGTATCGGGA
CAATTCATCGCCCTTGGTATGAGAAAATTTCATGCTGCTGCGGAATTGAT
CGCAGTGACAATAGCGGCCGGAGCCGTCGTGGGCTCATGATTTCTGGGGC
ATGCTTGACAGCCGGAATCGTATTGGAGCTGATCGCGACCCTCTGGGCGT
TCCGCCAAGCCGTCCAAGCAGGGGGTCTGGATGGTCAGGCCAATTGCGAT
GAGGATGGATTTTTGTTTATGCAACATCTCAGCGTTGTCACGCAGGAGAT
GTGCAGCCAACAGGTCGATTCGGATCTGTTCCTGAGTGAAACAGGTTTAG
GCGGCGACTACGACCCTTGCGAATCCACGAATTCCGGGGACAGTTCATCA
TTTCTGGAGGTGTGTAGCTGCTCGACCGATATTGTTTTTGATGCGTCTGC
TTGTGCTTGGGTGGCTCTCCAAAATTCGAGCGGCGTTGTTTCGAACGACG
CTGGCTGCCTAGCGCGAGCAGTCGAACCCGAGTTTCCGTATTCCTTCGTA
CCAACGTTCGGTCTTTCCGAGTGTTGGCCGGCAAACCCTACCGGCACAGC
CGAGCTTACCGTGACCGCTCTGGTGGTAGCCCTGGGCAGTCAGCTAATGG
AGGCGGTGGTGGGCTTCCGGTACCTGAAGGACCCGTCCCGCGGCACCCTT
CTCCTCGCGGCGGCGTCAGCCGCCGCCGCTTGTGGGGTAGTGGCAGTGGC
ATCGGTGCTTCTATCACTCCCCAGCTTCTACGCCTACAGGGAAGGCTACC
CCACCGAGGTAGCGACGTTTTGGCTGGTGTGGGCAGCAGCCGGCGGCGCG
GCCGTGGGTGCCTTGGCAGAGTTTCTGGGTACGGAATTCTTCGTGGCGGA
AGGCCGGCTGCCGTACCTCGGCGCGTTCGGTAATGGGCTCGTCTGGCTGG
GCTCGGCGGCAATGGAGGTAATCGTCGCGTCGTTCCTTGTCTGGGAAGGG
GAGCGGGTCACGACCTGGGAACTCCTGAGAGACGGAGTTGTTGGTCTGGT
CACCGTCGAGATAGCCGCTTTGCTGGCGATGTGGGCCGCACGCTTTTTGT
GGACCAGGGCCAAGCTACTGTTGGCGGCCAAGGGGCGAAGGGGGGCGGAT
GATAATGACTGA
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