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Homology
BLAST of mRNA_E_fasciculatus_S2_contig7457.15627.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K8_ECTSI) HSP 1 Score: 639 bits (1649), Expect = 1.270e-208 Identity = 537/683 (78.62%), Postives = 552/683 (80.82%), Query Frame = 1
Query: 1 SAGGSAGRARGGGGADANGMGRREFTKLKSLLALMQKASTHAGLVNLGQLDMLKRSIQVVARGPMLFGEIFVGGI----PMASQ--ANVQAELKARADAIETLPAEEVLRRLAQKGAGNMGGLNRDVNRHWAVG---GEAEIKLRDSLEAMPLSQLKHRQGLR*EGLPVPRSWAVLKPKADIVTGSVDLRFGVARPPALLSAAPSPXXXXXXXXXXXXXXXXXXXXXXGGKGXXXXXXXXDEGQADFDVRKLLKVSDTIRVGVNSEDNEATIEGIGERSATLACEWSEGPVKAGSVYRFSNSTRRKPYVDLIVASDKAKKDTEVQVAGFSAIYKAMAGEPVSCPICMCSVVRPTVTKCAHLFCRECISRELQRTPAFGMVQLPQAKCPICRRTMKGSEMMELQTLSEVEEAMAIDAPSTAENNRGDTGAVAAEGGATEASEGGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSDPAAATCGGGSSCXXXXXXXXXXXXXXXXXXXXXXSGRSAVDPTSTSSRG----------PGEGSAGDPXXXXXXXXXXXXXXXXXXXXXXXXXXPAPAGDEDGVAGPSLVIPTFRFTPTATASFLSQYRAATSSQSSVKLDALVRDLDTTLLHDPAAKFVIFSQYPQV 1992
SAGGSA GGA+ANGMGRREFTKLKSLLALMQKASTH GLVNLGQLDMLKRSIQVVA L+ + VGG+ PMASQ ANVQAELKARADAIETLPAEEVLRRLAQKGAGNMGGLNR+ R G G EI LRDSL+AMPLSQL+HR L EGLPVPRSWAVLKPKADIVTGSVDLRFGVA PPALL AAPSP XXXXXXXXX XXXXXXXXDEGQADFDVRKLLKVSDTIRVGVNSEDNEATIE IGERSATLACEWSEG VKAGSVYRFS STRRKPYVDL+VASDKAKKDTEVQVAGFSAIYKAMAGEPVSCPICMCSVVRPTVTKCAHLFCRECISRELQRTPA GM+QLPQAKCPICRRTMKGSEMMELQTLSEVEEAMAIDA S A+N+ GD GA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXX +G S S++ RG XXXXXXXXXXXXXXXXXXXXXXXXXX EDGVAGPSLVIPTFRFTPTATA+FLSQYRAATSSQSSVKLDALVRDLDTTLLHDP AKFVIFSQYPQV
Sbjct: 708 SAGGSA------GGAEANGMGRREFTKLKSLLALMQKASTHPGLVNLGQLDMLKRSIQVVAPVQPLWQWLPVGGMAGPAPMASQLQANVQAELKARADAIETLPAEEVLRRLAQKGAGNMGGLNRNRGRGTVTGPSAGRREITLRDSLQAMPLSQLQHR--LEEEGLPVPRSWAVLKPKADIVTGSVDLRFGVAPPPALLPAAPSPPSGSVAEGDGGAEXXXXXXXXXXXXXXXXXXXXXDEGQADFDVRKLLKVSDTIRVGVNSEDNEATIEDIGERSATLACEWSEGAVKAGSVYRFSTSTRRKPYVDLLVASDKAKKDTEVQVAGFSAIYKAMAGEPVSCPICMCSVVRPTVTKCAHLFCRECISRELQRTPALGMIQLPQAKCPICRRTMKGSEMMELQTLSEVEEAMAIDASSAADNSSGDAGAXX-------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARSNGGSVA--ASSNERGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDGVAGPSLVIPTFRFTPTATATFLSQYRAATSSQSSVKLDALVRDLDTTLLHDPTAKFVIFSQYPQV 1367
BLAST of mRNA_E_fasciculatus_S2_contig7457.15627.1 vs.
Match: Helicase (C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY1_9PHAE) HSP 1 Score: 125 bits (315), Expect = 1.120e-26 Identity = 103/148 (69.59%), Postives = 105/148 (70.95%), Query Frame = 1
Query: 1621 SGRSAVDPTSTSSRGPGEGSAGDPXXXXXXXXXXXXXXXXXXXXXXXXXXPAPAGDEDGVAGPSLVIPTFRFTPTATAS------------------------FLSQYRAATSSQSSVKLDALVRDLDTTLLHDPAAKFVIFSQYPQV 1992
+GRS VDPTST GDP XXXXXXXXXXXXXXXXXXXXX PA AGDEDGV GPSLVIPTFRFTPTATA+ FLSQYRAATSSQSSVKLDALVRDLDTTLLHDP AKFVIFSQYPQV
Sbjct: 126 NGRSGVDPTSTXXXXXXXXXXGDPRSAAXXXXXXXXXXXXXXXXXXXXXAPA-AGDEDGVTGPSLVIPTFRFTPTATAAQLSGAIPPPVMFPRDNTVPSLEQTFLSQYRAATSSQSSVKLDALVRDLDTTLLHDPTAKFVIFSQYPQV 272
BLAST of mRNA_E_fasciculatus_S2_contig7457.15627.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV89_9STRA) HSP 1 Score: 110 bits (275), Expect = 1.560e-21 Identity = 67/204 (32.84%), Postives = 104/204 (50.98%), Query Frame = 1
Query: 730 LKVSDTIRVGVNSEDNEATIEGIGERSATLACEWSEGPVKA------------------------GSVYRFSNSTRRKPYVDLIVASDKAKKDTE--------VQVAGFSAIYKAMAGEPVSCPICMCSVVRPTVTKCAHLFCRECISRELQRTPAFGMVQLPQAKCPICRRTMKGSEMMELQTLSEVEEAMAIDAPSTAENNR 1245
L S +R+G N D EA + + +ATL +W V G++++ + ++R++PY++L++AS++ K+ T + AGF +YKAMAG+ V CPIC+ SVVRP VT C H++CRECI EL +P KCP+CRR + ++ ELQ + E+ A S ++NR
Sbjct: 51 LHGSALVRIGTNDADAEAQLASVSGDTATLTADWPGSAVTKVHLTVMHIXXXXXXXXXXXXXXXKGAIWKHAVASRKQPYIELLLASEREKRVTGXXXXXSGGIHTAGFQTVYKAMAGDEVHCPICLGSVVRPCVTMCVHVYCRECIGAELD-IRLHQPTHVP--KCPLCRRDVNPGDVCELQLDTTEEDPDAQQHDSAQQHNR 251
BLAST of mRNA_E_fasciculatus_S2_contig7457.15627.1 vs.
Match: RING-type (E3 ubiquitin transferase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DH38_HETAK) HSP 1 Score: 96.7 bits (239), Expect = 8.080e-19 Identity = 63/174 (36.21%), Postives = 93/174 (53.45%), Query Frame = 1
Query: 718 VRKLLKVSDTIRVGVNSEDNEATIEGI-----GE-----RSATLACEWSEGPVKAG----SVYRFSNSTRRKPYVDLIVASDK----AKKDTEVQVAGFSAIYKAMA-GEPVSCPICMCSVVRPTVTKCAHLFCRECISRELQRTPAFGMVQLPQAKCPICRRTMKGSEMMELQ 1182
+ + I VG +ED+EA + + GE R E+ + G +VYR S +++PY++LI+A +K + D +V AGF+ +YK MA + V CP+CM +V RPTVT CAHLFC+EC+ L G P KCP+CRR + SE+ME++
Sbjct: 40 LANFFSTENKIGVGGITEDHEAIVGAVVRAGGGEKDELRRRVHYTPEFGSFAPRMGDAQLTVYRHGVSKQKEPYMNLIIAQEKEAAGSSHDGDVHEAGFAVLYKLMARADDVHCPVCMGAVSRPTVTPCAHLFCQECLLAVLADHARQGGAGAP--KCPLCRRDVARSELMEVE 211
BLAST of mRNA_E_fasciculatus_S2_contig7457.15627.1 vs.
Match: Uncharacterized (protein n=9 Tax=Saliceae TaxID=238069 RepID=A0A2K1ZW75_POPTR) HSP 1 Score: 57.4 bits (137), Expect = 8.800e-5 Identity = 25/62 (40.32%), Postives = 34/62 (54.84%), Query Frame = 1
Query: 985 GEPVSCPICMCSVVRPTVTKCAHLFCRECISRELQRTPAFGMVQLPQAKCPICRRTMKGSEM 1170
GE CPIC+C +T+CAH+FCR CI + LQR CP+CRR + S++
Sbjct: 631 GEDFDCPICICPPTETVITRCAHIFCRPCILKTLQRAKQC---------CPLCRRPLSVSDL 683
BLAST of mRNA_E_fasciculatus_S2_contig7457.15627.1 vs.
Match: DNA/RNA (helicase n=2 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3M6F5_TRIPR) HSP 1 Score: 55.5 bits (132), Expect = 9.390e-5 Identity = 25/62 (40.32%), Postives = 36/62 (58.06%), Query Frame = 1
Query: 985 GEPVSCPICMCSVVRPTVTKCAHLFCRECISRELQRTPAFGMVQLPQAKCPICRRTMKGSEM 1170
GE CPIC+ +T CAH+FCRECI + LQR+ + CP+CRR++ S++
Sbjct: 5 GEDFDCPICLSPPTDIVITCCAHIFCRECILKTLQRS---------NSSCPLCRRSLSESDL 57
BLAST of mRNA_E_fasciculatus_S2_contig7457.15627.1 vs.
Match: SWI/SNF-related (matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3-like (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392NKB0_9FABA) HSP 1 Score: 54.7 bits (130), Expect = 9.830e-5 Identity = 43/127 (33.86%), Postives = 59/127 (46.46%), Query Frame = 1
Query: 811 ATLACEWSEGPVKAGSVYRFSNSTRRKPYVDLIVASDKAKKDTEVQVAGFSAIYKAMAGEPVSCPICMCSVVRPTVTKCAHLFCRECISRELQRTPAFGMVQLPQAKCPICRRTMKGSEMMELQTLS 1191
A+LAC + + V A S+S + + Y+D ++ I K GE V C ICM S P T CAH FCREC+ T G KCPICR+++K S+++ L T S
Sbjct: 82 ASLACTFLQNSVSA------SHSVQSRGYIDEVLGH----------------IQK---GETVECSICMESPDDPVFTPCAHQFCRECLFN-CWGTSMGG-------KCPICRQSLKKSDLIALPTES 175
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7457.15627.1 vs.
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 7
| Match Name | E-value | Identity | Description | |
|---|
| Uncharacterized | 1.270e-208 | 78.62 | protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... | [more] |
| Helicase | 1.120e-26 | 69.59 | C-terminal domain-containing protein n=1 Tax=Ectoc... | [more] |
| Uncharacterized | 1.560e-21 | 32.84 | protein n=1 Tax=Tribonema minus TaxID=303371 RepID... | [more] |
| RING-type | 8.080e-19 | 36.21 | E3 ubiquitin transferase (Fragment) n=1 Tax=Hetero... | [more] |
| Uncharacterized | 8.800e-5 | 40.32 | protein n=9 Tax=Saliceae TaxID=238069 RepID=A0A2K1... | [more] |
| DNA/RNA | 9.390e-5 | 40.32 | helicase n=2 Tax=Trifolium pratense TaxID=57577 Re... | [more] |
| SWI/SNF-related | 9.830e-5 | 33.86 | matrix-associated actin-dependent regulator of chr... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Stop | 0 |
| Start | 1 |
| Seed ortholog score | 229.2 |
| Seed ortholog evalue | 2.9e-57 |
| Seed eggNOG ortholog | 2880.D7G2K8 |
| Model size | 1992 |
| KEGG ko | ko:K15710,ko:K15711 |
| Hectar predicted targeting category | other localisation |
| Exons | 12 |
| EggNOG free text desc. | pyrimidine dimer repair by nucleotide-excision repair |
| EggNOG OGs | COG0141@1,COG0553@1,KOG1001@2759,KOG1002@2759 |
| Ec32 ortholog description | Helicase superfamily 1/2, ATP-binding domain |
| Ec32 ortholog | Ec-11_002600.2 |
| EC | 2.3.2.27 |
| Cds size | 1014 |
| COG Functional cat. | E |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko01000,ko03400,ko04121 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842408.125355-CDS-E_fasciculatus_S2_contig7457:57..175 | 1696842408.125355-CDS-E_fasciculatus_S2_contig7457:57..175 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig7457 58..175 - |
| 1696842408.1415927-CDS-E_fasciculatus_S2_contig7457:511..531 | 1696842408.1415927-CDS-E_fasciculatus_S2_contig7457:511..531 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig7457 512..531 - |
| 1696842408.159052-CDS-E_fasciculatus_S2_contig7457:974..1668 | 1696842408.159052-CDS-E_fasciculatus_S2_contig7457:974..1668 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig7457 975..1668 - |
| 1696842408.1695063-CDS-E_fasciculatus_S2_contig7457:2007..2111 | 1696842408.1695063-CDS-E_fasciculatus_S2_contig7457:2007..2111 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig7457 2008..2111 - |
| 1696842408.182697-CDS-E_fasciculatus_S2_contig7457:2618..2696 | 1696842408.182697-CDS-E_fasciculatus_S2_contig7457:2618..2696 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig7457 2619..2696 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842408.1945388-UTR-E_fasciculatus_S2_contig7457:2696..2710 | 1696842408.1945388-UTR-E_fasciculatus_S2_contig7457:2696..2710 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig7457 2697..2710 - |
| 1696842408.2057204-UTR-E_fasciculatus_S2_contig7457:3307..3479 | 1696842408.2057204-UTR-E_fasciculatus_S2_contig7457:3307..3479 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig7457 3308..3479 - |
| 1696842408.2168722-UTR-E_fasciculatus_S2_contig7457:4199..4370 | 1696842408.2168722-UTR-E_fasciculatus_S2_contig7457:4199..4370 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig7457 4200..4370 - |
| 1696842408.227984-UTR-E_fasciculatus_S2_contig7457:4812..4970 | 1696842408.227984-UTR-E_fasciculatus_S2_contig7457:4812..4970 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig7457 4813..4970 - |
| 1696842408.2386057-UTR-E_fasciculatus_S2_contig7457:5249..5357 | 1696842408.2386057-UTR-E_fasciculatus_S2_contig7457:5249..5357 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig7457 5250..5357 - |
| 1696842408.2500627-UTR-E_fasciculatus_S2_contig7457:5785..5900 | 1696842408.2500627-UTR-E_fasciculatus_S2_contig7457:5785..5900 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig7457 5786..5900 - |
| 1696842408.270515-UTR-E_fasciculatus_S2_contig7457:6294..6387 | 1696842408.270515-UTR-E_fasciculatus_S2_contig7457:6294..6387 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig7457 6295..6387 - |
| 1696842408.2862585-UTR-E_fasciculatus_S2_contig7457:6880..7027 | 1696842408.2862585-UTR-E_fasciculatus_S2_contig7457:6880..7027 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig7457 6881..7027 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7457.15627.1 >prot_E_fasciculatus_S2_contig7457.15627.1 ID=prot_E_fasciculatus_S2_contig7457.15627.1|Name=mRNA_E_fasciculatus_S2_contig7457.15627.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=338bp
MAGEPVSCPICMCSVVRPTVTKCAHLFCRECISRELQRTPAFGMVQLPQA
KCPICRRTMKGSEMMELQTLSEVEEAMAIDAPSTAENNRGDTGAVAAEGG
ATEASEGGGSSSSSSSSSSGSGNGKGKKKARREVEGFEDEKEEEAEEAIS
GDDHSHGTNAAEASASASNGTSASAAAPSDPAAATCGGGSSCGSSCGSSG
GGALSSSVSAAASSSGRSAVDPTSTSSRGPGEGSAGDPSSAAGGASAAGA
GSGAGSGGVVAGAAPAPAGDEDGVAGPSLVIPTFRFTPTATASFLSQYRA
ATSSQSSVKLDALVRDLDTTLLHDPAAKFVIFSQYPQV back to topmRNA from alignment at E_fasciculatus_S2_contig7457:58..7027- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig7457.15627.1 ID=mRNA_E_fasciculatus_S2_contig7457.15627.1|Name=mRNA_E_fasciculatus_S2_contig7457.15627.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=6970bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7457:58..7027- (Ectocarpus fasciculatus EfasUO2)
TCAGCCGGGGGTTCCGCCGGACGTGCAAGAGGAGGTGGGGGGGCGGACGC
GAACGGCATGGGCCGTCGGGAGTTCACCAAGCTCAAGTCGCTGCTGGCGC
TTATGCAGAAGGCGTCTACCCACGCGGGCCTTGTAAACCTCGGACAGGTG
AGTAGATACATGTACATTGTTGGTGCCGCTGTGCTGTGTTTGTTGCTGCG
GCCGCTTGTTTCGCTTGAAAAAAAGCCGTCGTGACCTGTCTCCAGTAGCG
CTCTGGTGTGTAGGTCCTTTCCCGTCCGACCAACCGAAGAGGTTGGCGTT
ACGATTATTTCCCTACGAGTCATCAAAAGCTTTGCTGCGGTCAAAAGGAG
GTACAGTGGCGAAAGGTGCGTGTATGACGAATGTGCAGCTATCCTACACC
TCCAGCAACCGCGAACTCTTACCTCCTTCTCGTTGCCGGTGTCTTACGCG
CGTTTACGCAGCAGCGTATTCGCGAAAACACACAAATAAAAAAGAACGAT
CCAACTGGTGCTCATTTTGTTCAATTTCTCTCTCTCTCTTTCTCTCTCTC
TCTCTCTCTTTCTCTCTCTCGCTCTCTCTCTGTCTCTCTCTCACTCTCAC
TCTCGCTCTCTCTGGTGCGTGGTGCCCATTCGTTGATCAGCTGGACATGC
TCAAGCGATCTATTCAGGTTGTTGCACGGGGACCGATGTTGTTTGGGGAG
ATTTTTGTGGGAGGCATTCCCATGGCATCTCAAGTGCAGGCAAGCGCAGC
AGCGTCTTTTTGTGACTGTTGTCGTAGTAGTCGTGGTGGTGGTGGTGGTG
GTGCCGGCTGTGATGGTGGTGTGTATGCCGATCGGTGTGTTTTGTCAGTC
CGTGGTGGTGGTAGTGATACGGGTAGGCGGGCCATAAGCGGTGGTCCGTA
CATCGTCTAAAGGGACGGGCAGGCGCGCAAGATGTGCGTTTGGTTATTCA
TGGTGAACAACAGCCGGGTGCAGACTTCGAGAAAATGTTTGTTTTTTTTC
TACGACCACACGCACAAATCATACCCCCCCCACCCCCGTGCAAGGTCAAT
GGTCTAACACCTACGGTATACGTTTACACGAGCCGTCGTTGTGTGTATGT
CCTCCGGTTGTCCTTGACATGATTCAGGCGAATGTCCAGGCGGAGCTGAA
GGCTAGGGCGGACGCGATCGAGACGCTCCCGGCGGAGGAGGTCCTCCGTC
GCTTGGCGCAGAAGGGCGCGGGCAACATGGGCGGACTCAACCGTGAGAAA
ATGATTTTGCTGTGCTGTGTTTTGCCTATCTGTTGCGCTGTGCTGTGCTG
TGCTGTGCTATGCTGTGTGCTTCGTTATGTCATATTTTTGTGAGTGTTAG
TGTTGGCATCGACCGCTACTACTACTACACAGTGTTGGCTGACCAAACGA
AATGTCAGAGACAAGGCTTGTCTTTGTCCGCGGGCCTATGCATAGAATAG
TTGATTGAATGTATCGTTTTTTTTGCTCTCGCAGGATTGGGGTCGTTTGG
CTGCTGTTGCATCCCTGGTCTCTCTCTCCTCTCACTCGCGTGCACAGCCG
TGTTAAATGGTGTCGACGCATGTATGTACCCGTAAGTGTCGTACTCGGTG
TGCCCTTGGCTTGAGAATCTCGGACATCTCGGTGACCACCCCCACCCCCG
CCGCCGACGAACGGTTGCAGGCGATGTGAACCGTCACTGGGCCGTTGGCG
GAGAGGCGGAGATCAAGCTCAGGGACTCGCTGGAGGCGATGCCGCTGTCG
CAACTGAAGCACAGGCAAGGGCTCCGCTGTTATGCATAAGCCGCGGTGTA
CACTTATCGTATTTAGGGCCTCCTCTTGTGTCTGCCACCCCCGTCTTGAC
TCTTGCGCATCTTCTTGCATTCCACGGTGCGACGTTCCACCAACCACCCC
CCCGGCTGTTGTTTTTCGAGATGTACACCAGCGGCGCTGTTTGCCTGAAG
CCTCTCCGCAATAACTCTTGCACTATCCCGCACATTTATGTTGTCATGTT
GCCTGTTCTGGTGCCCCCCCCCCACCCCTTTGTCTCCCCGCGGTCTCAGG
CTCGAAGAGGAAGGTCTTCCGGTCCCGCGGTCGTGGGCGGTTCTGAAGCC
CAAGGCGGACATCGTGACGGGCAGCGTCGACCTCCGCTTCGGGGTCGCGC
GCCCCCCCGCGCTGCTGTCGGCGGCGCCGTCACCCTCACCCCCCCCTGAG
TCGTCGGCGGCGGAGGTGAGGCGTAGTGTGGGGAGGAAGCCGGGTGCGGG
TGCACACCGCCGGTGGTGGTGGTGTTGGTGTTACTGTTGTTGTGGAACTG
GCGTTGTGCTCGTGTTGTGTTGTCGTCGTTGTTGTTGTTGTTGTTGCTGC
TGCTGTTGCTGTTGTTGTTGCTGCCGTTGCTGTTGTTTTGTTTTGTTTCG
TTGCTGTTGTTTGTTGCTGCTGTTGATTTGTAGTAGTTGCTGCTGTTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGTTGTAGCTGGCATTGT
TGTTGTCGTCGTCCTCGTTGCTGCATGCTTAGCGGTCGCGCACGAACACT
AGGCCGCTGTTTCTATCCGAGGACGGTCAAGCAGTGTATGCAAGGCGTAG
GACGAGAAGGAGGAACGGAGCTCTGAGGACTTTTTTTTTTCTCTTGTTCT
TGTGCAGGACGGCGGTGCAGAAAGCGGCGGCAGCAGCAGCAGCGGCGGCA
AGGGGAAGGGGAAGGGCAAGAGGAAGAGAGACGAGGGCCAGGCGGACTTC
GACGTGCGGAAGCTCCTCAAGGTCTCGGACACGATCAGGGTGGGCGTCAA
CTCGGAGGACAACGAGGCTACCATCGAGGTGAGCACAGCCATTGCAGCGA
TATTCAGCAGTAGAGGGGGGGGGGGAGCTCAATGACAACAACGCCGGTAA
CCACGCCGGTGAAATTGCTGAGCACAGACTGAATCATCAAGCTATTCTTT
GCTTTGGATAGCGCCGGTCGATTCGCCGGACACATCCCGGCGTTATTGAT
CCCCCCCCCCGACACCGTAGTTGCTATATGGCGACTAACGACTATTAATA
CATTGTAGTGCGTCTTGTTTCGCTGCTTTTGGACTGGGGGAGGCCTTGCT
CCTTTGCGGTTTTGTTACTTGTCCCGGGCACGGCGGCGGAATCGACGACG
GTTCGAGCTGTATGATCGGCGGGTCGAGGCGGGGCGCCTCTTTCCGAAAG
GGATGGGTTTTGTTGCCATCGCATCGTTCAAGAGAGATGGATGGTTTGGG
TGTTGTGCTTGTGATAGAAACACCCGGCGTGAACACGGAGAACTACGCTA
CACCAGACAAGTCCATGGTTTGAGGCGATTCAGGGTTGTGGGCCGGAATG
ACGATGGCCGGTTGATATCGGGGATCGTTTTTTGGGTTCGATTTTCAACT
GCCCTGACACCAAGGCCATACGGGAGAGCTCAGCGAGTGGCCTGCCCTCC
CCCCCCCCCCACCCCGCGCGCGCTTTGTCTTTCGAGCCTCCTGTTACTGA
TCCTGATCGTTCTCCTACCCCTCAATGACCCTCTTTTATATCCCCAAGGG
CATCGGAGAGAGATCGGCGACGCTGGCGTGCGAGTGGTCGGAAGGGCCGG
TCAAGGCCGGGTCGGTGTATCGGTTCTCCAATTCCACCCGGAGGAAGCCG
TACGTTGACCTGATTGTTGCAAGCGACAAGGCCAAGAAGGACACCGAGGT
GCAGGTCGCGGGCTTCAGCGGTGAGAGGGATCGGGGTTGTTGTTGTTTTT
GTTGGTGCTGTTGTCTTTGTTGCTGTTGGTGGTGGTGATGTTTTTGAAGG
TACGCAAACACAGCAGGACGCACCCGTTCGAGGTGCACGTCCGAGATATT
ACCGCAGCAGCAGCCGAAGGGGATGTGTTTTTAAGTGTTTGCAGTGAATG
GAAGAAAAACCGGCTCGATACTGTGCTATTTTGGGTGTAACTGCTGTAGC
ACGTGCCGCGTCAGTAGGGCTCGCAGCTGTACCAGTTTCCACGTACTGTA
CCTTTGTGACGTTCGAGACAATTTCACACACACACGAACATCTTTTCATT
TATCAGCCGGTTTAATGCTAATGCGGTGGATGATGCGATGGATGGTGGTA
TTTACAGCGTCAGGCACACAACACACGTCGTCTGTATCCTCTATTTCGCT
GCGTCCGCTTTGAACCGTCCGTGAACGCGCTCACGACCGTTACACTACCA
CCATCTTATCGGCGTCGTTCCGTATCCCCCCACTCGTTCTCTGCCCCCGC
TCGCCCGTTGCGCCGCCGCTTACTTGGACGAACACGAAAACCGCGCCGGC
ACCCGCCAACAACACAGCCATCTATAAGGCCATGGCGGGAGAGCCGGTGT
CGTGTCCCATCTGCATGTGCAGCGTAGTCCGCCCCACCGTTACCAAGTGT
GCGCACCTGGTGAGTTTATACAGTACGTACAAAACGAATATACTATCAGT
TGGTGTATGAGTGCATGTTCGTTCTAGACAGGTGCACCCCTCTTGGGGTA
CATACAGTACAGTGTAGTTGGCTATTATAGTGACCACGGAAGGCGTCTGG
ATCAGTTGGACAAGCACGGACATTAGAAGGTGTACCCCCTTTGTGGTAGT
TGGCTATTATAGTGACCACGGAGGGCGTCTGGATCAGTTGGACCAGTACG
GACATTAGAGGGTACGGAGCGCAGACCGGAATGGTTTTGGATGTCAAGAG
AACAACAACAACTGCAAGAAGAACTTGCAGCGTCCAGACACGCTATTGTA
CCAGGTGCCCATTTTCATGAGCCATATACCTCATGCGGCGGCTTTGCATT
TGTGTTGTGCTTTCTGTTGTTCCTTTTTTTTCTTTTCATATGTATGTTGT
GCCTCTTTTCGCCCTTGCTTGTCCATCTGCTTGTTTGGGCGCCTTGTCCT
TGTCCTTGTCCTTCAGTTCTGCCGTGAGTGTATCTCGCGCGAGCTCCAGA
GGACTCCCGCGTTCGGCATGGTTCAACTTCCTCAGGCCAAGTGCCCCATC
TGCCGACGAACGATGAAGGGGTGAGCTATGTAGTGGCGGGTGAAGAGAGA
TCGGGGGGAGAGGGAGACAGACAGACAGAGAGGCGCGACAGGCAGACAGA
GACAGCGAGAGGAGATTGAGGGATTCGTGGTGACGCGGGTGTTATTGCCG
TCGCGAAGACGCTTGCTTTTCGACGCAGTCAATGCCCCTTCCGAGAAACT
CGCACGCATGACTCACAAGTTCTCGCGCCCCCCCCCCCCNNNNNNNNNNA
AAAACCTCCCCAAAGCCCGTGTTGGGGGATGGCGGTAGCAGGTTGTTTTT
TTGTGCCCCCAGCTGCCTCAAACTTTTTCCCCCCCCCCCCCCCCCCCCCC
CGTCTCCAGATCGGAGATGATGGAGCTTCAGACTCTGAGCGAGGTGGAAG
AGGCCATGGCAATCGACGCTCCTTCTACCGCTGAGAACAACAGGGGAGAC
ACTGGCGCTGTTGCAGCAGAAGGAGGGGCTACCGAGGCAAGCGAAGGCGG
CGGAAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCGGTAGCGGTAACGGTA
AGGGCAAGAAGAAGGCCAGGCGGGAAGTGGAAGGGTTCGAGGACGAGAAG
GAGGAAGAGGCCGAGGAAGCAATCAGCGGAGACGATCACTCACACGGAAC
GAACGCCGCGGAGGCGAGTGCTTCGGCAAGCAACGGTACCTCCGCCTCTG
CCGCAGCGCCTTCTGACCCCGCCGCCGCAACCTGCGGCGGCGGCAGCAGC
TGCGGCAGCAGCTGCGGCAGCAGCGGCGGCGGTGCTCTCAGCAGCAGCGT
CAGCGCGGCCGCGAGCTCCAGCGGCAGGAGCGCCGTTGACCCTACCTCGA
CCTCTTCCCGAGGCCCTGGCGAAGGGTCGGCCGGTGACCCCAGCTCGGCG
GCGGGAGGTGCTAGCGCAGCCGGGGCAGGGTCGGGAGCAGGTAGTGGAGG
GGTGGTGGCAGGAGCGGCGCCGGCGCCGGCTGGAGACGAGGACGGTGTCG
CGGGGCCAAGCCTTGTAATTCCTACGTTCCGCTTCACTCCGACGGCGACG
GCGGTGAGTTTTTTTTTCGCGGGGGGCGGGAAGGTGGTCGTCCAATACAT
ATGTGCGTTCGGAGGATACAGCAGTATAGCCATGTTGGTCGTGTTTGCAT
GTATGCGTACGGAGAACAATGGATAGCCATGTTGGATGTTGTTATGAAAT
TTCATTTCGATGCTGGTTTTGCTGCGTGGGAAGATCGTTGCGTGTGTCGT
GTGTCGAGGGTGATTGTTGGTGTATAGGTGTTGCGCGTCGTGGGATCGTT
GCCACTGATCCATCCCTCTCCTATGAAAAACGGACAGAAGCCCTCATCAT
CACCGCTGCCTACGCTTGGCTCTCTTGTGCGCCTGTCGCGCGGTCACTGC
TCTCCCCCCGCCCGCCCTTCTCAGGCCCAGCTCAGCGGGGCAGTACCACC
CCCGGTCATGTACCCTCGAGACAACACCGTCCCTTCCCTGGAGCAGAGTT
TCCTCTCCCAATACAGGTACGCCAAGAACTCCCATACCGTACATGCCGTT
ATATACTACCGTATCGGTCCACAATACCATACCGTACCGACAATTCTACC
GTACCGGTCTATACCCAGGTTGGAAAGCATGTTTTCGGGGATTGCCATTG
ACGCGGCGTTATTTTGGCTCTCGTATTATATGGTAAGGAACGTGTTACTT
TCGTGGTGCTGCTGTAGAGACAGAACCATTGTGGGCATACGGGCAGGGTG
TTAACTTCATGTCTGCGTACTCTCCGATATTTGGTTTTGCGCAGGACAGT
TTTTATTTTCGTCTTTTTCATGTTTTGTTTGTTTGTTTGTTTGTTGCCGC
AGGGCCGCGACGAGCTCGCAGTCCAGCGTGAAGCTCGACGCCCTCGTCCG
CGATCTGGACACCACCCTCCTGCACGACCCGGCCGCCAAGTTCGTCATCT
TCAGCCAGTACCCTCAGGTT back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig7457:58..7027- >mRNA_E_fasciculatus_S2_contig7457.15627.1 ID=mRNA_E_fasciculatus_S2_contig7457.15627.1|Name=mRNA_E_fasciculatus_S2_contig7457.15627.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1014bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7457:58..7027- (Ectocarpus fasciculatus EfasUO2)
ATGGCGGGAGAGCCGGTGTCGTGTCCCATCTGCATGTGCAGCGTAGTCCG
CCCCACCGTTACCAAGTGTGCGCACCTGTTCTGCCGTGAGTGTATCTCGC
GCGAGCTCCAGAGGACTCCCGCGTTCGGCATGGTTCAACTTCCTCAGGCC
AAGTGCCCCATCTGCCGACGAACGATGAAGGGATCGGAGATGATGGAGCT
TCAGACTCTGAGCGAGGTGGAAGAGGCCATGGCAATCGACGCTCCTTCTA
CCGCTGAGAACAACAGGGGAGACACTGGCGCTGTTGCAGCAGAAGGAGGG
GCTACCGAGGCAAGCGAAGGCGGCGGAAGCAGCAGCAGCAGCAGCAGTAG
CAGCAGCGGTAGCGGTAACGGTAAGGGCAAGAAGAAGGCCAGGCGGGAAG
TGGAAGGGTTCGAGGACGAGAAGGAGGAAGAGGCCGAGGAAGCAATCAGC
GGAGACGATCACTCACACGGAACGAACGCCGCGGAGGCGAGTGCTTCGGC
AAGCAACGGTACCTCCGCCTCTGCCGCAGCGCCTTCTGACCCCGCCGCCG
CAACCTGCGGCGGCGGCAGCAGCTGCGGCAGCAGCTGCGGCAGCAGCGGC
GGCGGTGCTCTCAGCAGCAGCGTCAGCGCGGCCGCGAGCTCCAGCGGCAG
GAGCGCCGTTGACCCTACCTCGACCTCTTCCCGAGGCCCTGGCGAAGGGT
CGGCCGGTGACCCCAGCTCGGCGGCGGGAGGTGCTAGCGCAGCCGGGGCA
GGGTCGGGAGCAGGTAGTGGAGGGGTGGTGGCAGGAGCGGCGCCGGCGCC
GGCTGGAGACGAGGACGGTGTCGCGGGGCCAAGCCTTGTAATTCCTACGT
TCCGCTTCACTCCGACGGCGACGGCGAGTTTCCTCTCCCAATACAGGGCC
GCGACGAGCTCGCAGTCCAGCGTGAAGCTCGACGCCCTCGTCCGCGATCT
GGACACCACCCTCCTGCACGACCCGGCCGCCAAGTTCGTCATCTTCAGCC
AGTACCCTCAGGTT back to top
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