mRNA_E_fasciculatus_S2_contig743.15607.1 (mRNA) Ectocarpus fasciculatus EfasUO2
|
Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig743.15607.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGV4_ECTSI) HSP 1 Score: 285 bits (728), Expect = 1.370e-93 Identity = 163/196 (83.16%), Postives = 171/196 (87.24%), Query Frame = 1
Query: 202 VPPLSATTDDSGENGVITGSNQLEGWKRNTVGAAADAPTRSNVMGRRR-GDGSNGGDPAAAA-GNTEPAPFAPRGGDGGVADGGNSADGATAWRVEAAATSAELLLSFKTALAAREPLMRKLLEEETDCYRLYHGAVEGCPGLTVDRYGTVVLVQTFRDPPADFSAEAVEEICRLASEAIHTAEA-GAAPAPAAGQ 780
+P L AT DDSG++GVI GSNQLEGWKRNTVG AADAPTRSNVMGRRR GDGSNG DPAAAA GNTEPA +P G A GG SAD ATAWRVEAAAT+AELL+SFKTALAAREPLMRKLLEEETDCYRLYHGAVEGCPGLTVDRYGTVVLVQTFRDPPADFSAEAVEEICRLASEA+H AEA AAP A G+
Sbjct: 1 MPSLPATPDDSGDSGVIAGSNQLEGWKRNTVGTAADAPTRSNVMGRRRPGDGSNGCDPAAAAAGNTEPASLSPH--HRGDAYGG-SADDATAWRVEAAATTAELLVSFKTALAAREPLMRKLLEEETDCYRLYHGAVEGCPGLTVDRYGTVVLVQTFRDPPADFSAEAVEEICRLASEAMHAAEARAAAPVGAQGR 193
BLAST of mRNA_E_fasciculatus_S2_contig743.15607.1 vs.
Match: 23S (rRNA (Cytosine1962-C5)-methyltransferase n=1 Tax=Pseudomonas oryzae TaxID=1392877 RepID=A0A1H1Z0I6_9PSED) HSP 1 Score: 81.3 bits (199), Expect = 8.770e-14 Identity = 45/104 (43.27%), Postives = 60/104 (57.69%), Query Frame = 1
Query: 514 SFKTALAAREPLMRKLLEEETDCYRLYHGAVEGCPGLTVDRYGTVVLVQTFRDPPADFSAEAVEEICRLASEAIHTAEAGAAPAPAAGQAAKEAVAFLPVWNDR 825
+ + ALA R+PL+ +L E+ TDCYRL+HG+ EG PGLTVDRYG +LVQ+F P EA+ E+ +EA+ A A LPV+NDR
Sbjct: 7 ALRAALARRQPLLAELHEQGTDCYRLFHGSQEGAPGLTVDRYGPQLLVQSFHQP---LEREALLELFATCAEAL-------------------ATALLPVYNDR 88
BLAST of mRNA_E_fasciculatus_S2_contig743.15607.1 vs.
Match: Class (I SAM-dependent rRNA methyltransferase n=3 Tax=Zoogloea TaxID=349 RepID=A0A848G2P1_9RHOO) HSP 1 Score: 78.2 bits (191), Expect = 1.030e-12 Identity = 39/67 (58.21%), Postives = 46/67 (68.66%), Query Frame = 1
Query: 505 LLLSFKTALAAREPLMRKLLEEETDCYRLYHGAVEGCPGLTVDRYGTVVLVQTFRDPPADFSAEAVE 705
L+ S A ARE LM +LL E TD YRL+HG VEG PGLTVDRYG++VLVQ+F P +D VE
Sbjct: 5 LVTSLNAAFQAREALMARLLAEGTDAYRLFHGTVEGRPGLTVDRYGSLVLVQSFHSPLSDDEESEVE 71
BLAST of mRNA_E_fasciculatus_S2_contig743.15607.1 vs.
Match: Class (I SAM-dependent rRNA methyltransferase n=8 Tax=Proteobacteria TaxID=1224 RepID=A0A3S0DVE1_9RHOO) HSP 1 Score: 77.4 bits (189), Expect = 1.900e-12 Identity = 47/104 (45.19%), Postives = 60/104 (57.69%), Query Frame = 1
Query: 517 FKTALAAREPLMRKLLEEETDCYRLYHGAVEGCPGLTVDRYGTVVLVQTFRDPPADFSAEAVEEICRLASEAIHTAEAGAAPAPAAGQAAKEAVAFLP-VWNDR 825
TALAAR PL+ +L E+TD +RL+HG VEG PG+TVDRYG V+LVQTF P +AE + E+ EA + +A+ LP VWNDR
Sbjct: 9 LSTALAARAPLIARLAAEDTDAWRLFHGTVEGAPGITVDRYGAVLLVQTFHRP---LTAEQLAEL-----EAFYA----------------QALPGLPLVWNDR 88
BLAST of mRNA_E_fasciculatus_S2_contig743.15607.1 vs.
Match: Class (I SAM-dependent rRNA methyltransferase n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A838LSP6_9RHOO) HSP 1 Score: 77.0 bits (188), Expect = 2.580e-12 Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = 1
Query: 496 SAELLLSFKTALAAREPLMRKLLEEETDCYRLYHGAVEGCPGLTVDRYGTVVLVQTFRDP--PADFSA 693
SA L+ S AL +R L+R+L EETD YRL+HG+VEG PGLTVDRYG ++L+QTF P PA +A
Sbjct: 2 SANLIQSLAAALDSRAALLRQLHTEETDAYRLFHGSVEGQPGLTVDRYGELLLIQTFHSPLPPAQLAA 69
BLAST of mRNA_E_fasciculatus_S2_contig743.15607.1 vs.
Match: 23S (rRNA (Cytosine1962-C5)-methyltransferase n=1 Tax=Amphritea japonica ATCC BAA-1530 TaxID=1278309 RepID=A0A7R6PAV1_9GAMM) HSP 1 Score: 76.3 bits (186), Expect = 4.540e-12 Identity = 37/69 (53.62%), Postives = 47/69 (68.12%), Query Frame = 1
Query: 505 LLLSFKTALAAREPLMRKLLEEETDCYRLYHGAVEGCPGLTVDRYGTVVLVQTFRDPPADFSAEAVEEI 711
+L + ALA R L+ L EE TDCYRLYHG+ EGC GLTVDRYG +L+QTF P + AEA+ ++
Sbjct: 1 MLNLIQDALARRSELLDALHEENTDCYRLYHGSNEGCSGLTVDRYGPQLLIQTFHQPISVEEAEAIHKL 69
BLAST of mRNA_E_fasciculatus_S2_contig743.15607.1 vs.
Match: Class (I SAM-dependent rRNA methyltransferase n=1 Tax=Amphritea balenae TaxID=452629 RepID=A0A3P1SVB3_9GAMM) HSP 1 Score: 76.3 bits (186), Expect = 4.540e-12 Identity = 35/73 (47.95%), Postives = 49/73 (67.12%), Query Frame = 1
Query: 505 LLLSFKTALAAREPLMRKLLEEETDCYRLYHGAVEGCPGLTVDRYGTVVLVQTFRDPPADFSAEAVEEICRLA 723
++ + ALA R L+ +L +E TDCYRL+HG EGC GLTVDRYG +LVQTF +P AE+++++ A
Sbjct: 1 MISQLQQALANRTGLLEQLHDENTDCYRLFHGTNEGCAGLTVDRYGPQLLVQTFHEPIDQTEAESIQQVTEQA 73
BLAST of mRNA_E_fasciculatus_S2_contig743.15607.1 vs.
Match: SAM-dependent (methyltransferase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E7M9I0_9DELT) HSP 1 Score: 75.1 bits (183), Expect = 1.160e-11 Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 1
Query: 523 TALAAREPLMRKLLEEETDCYRLYHGAVEGCPGLTVDRYGTVVLVQTFRDPPADFSAEAVEEICR 717
TA+ R L+ +L +E+TDCYRL+HGAVEG PGL VDRYG V+LVQ++ D P EA+ + R
Sbjct: 13 TAIDRRRALLERLHQEQTDCYRLFHGAVEGRPGLAVDRYGPVLLVQSWGDGPPQDEVEAMAAVAR 77
BLAST of mRNA_E_fasciculatus_S2_contig743.15607.1 vs.
Match: Methyltrans_SAM (domain-containing protein n=1 Tax=Elusimicrobia bacterium GWA2_62_23 TaxID=1797924 RepID=A0A1F9RGF4_9BACT) HSP 1 Score: 75.1 bits (183), Expect = 1.190e-11 Identity = 38/70 (54.29%), Postives = 45/70 (64.29%), Query Frame = 1
Query: 514 SFKTALAAREPLMRKLLEEETDCYRLYHGAVEGCPGLTVDRYGTVVLVQTFRDPPADFSAEAVEEICRLA 723
SF AL R PL+ +L E TDC RL+HG EG PGLTVDRYG ++L QTFRD + EA+E R A
Sbjct: 9 SFSQALDRRRPLLERLEAEGTDCCRLFHGIAEGLPGLTVDRYGPLLLAQTFRDCLSPSETEALEATLRKA 78
BLAST of mRNA_E_fasciculatus_S2_contig743.15607.1 vs.
Match: class (I SAM-dependent methyltransferase n=1 Tax=Zoogloea sp. 1C4 TaxID=2570190 RepID=UPI001292363E) HSP 1 Score: 75.1 bits (183), Expect = 1.190e-11 Identity = 35/69 (50.72%), Postives = 48/69 (69.57%), Query Frame = 1
Query: 499 AELLLSFKTALAAREPLMRKLLEEETDCYRLYHGAVEGCPGLTVDRYGTVVLVQTFRDPPADFSAEAVE 705
A L + AL AR L+ +L + TD +RL+HG VEG PGLTVDRYG+++LVQ+F DP + + EA+E
Sbjct: 3 ANLTAALARALEARRDLLARLASDHTDAFRLFHGTVEGHPGLTVDRYGSIILVQSFHDPLSPAALEALE 71 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig743.15607.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig743.15607.1 >prot_E_fasciculatus_S2_contig743.15607.1 ID=prot_E_fasciculatus_S2_contig743.15607.1|Name=mRNA_E_fasciculatus_S2_contig743.15607.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=314bp GRREQPRAIRPVVMMARRRDGVCRHAVHALLLLLLGLPVCQPFASPNVNLback to top mRNA from alignment at E_fasciculatus_S2_contig743:24810..27956+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig743.15607.1 ID=mRNA_E_fasciculatus_S2_contig743.15607.1|Name=mRNA_E_fasciculatus_S2_contig743.15607.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3147bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig743:24810..27956+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig743:24810..27956+ >mRNA_E_fasciculatus_S2_contig743.15607.1 ID=mRNA_E_fasciculatus_S2_contig743.15607.1|Name=mRNA_E_fasciculatus_S2_contig743.15607.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=942bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig743:24810..27956+ (Ectocarpus fasciculatus EfasUO2)back to top |