mRNA_E_fasciculatus_S2_contig7424.15597.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7424.15597.1
Unique NamemRNA_E_fasciculatus_S2_contig7424.15597.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7424.15597.1 vs.
Match: cGMP-dependent (protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLA4_ECTSI)

HSP 1 Score: 242 bits (618), Expect = 2.300e-72
Identity = 122/131 (93.13%), Postives = 127/131 (96.95%), Query Frame = 1
Query:    1 GDLCSNFVAQKLPKEYESTLKLSGSYASLDEDAIKEASKRAHVSTNEQLHATDFDDTLSGTTAISVLLKGDTLFVANVGDSRAIICSKPPGEESTVKPLSVDQTPFRKDERTRIKAAGGHVLTIDQIEGLE 393
            GDLCSNF AQKLPKE ES+LKL G+Y+SLDEDAIKEASKRAHVSTNEQLHATDFDDTLSGTTAIS+LLKGDTLFVANVGDSRAIICSKPPGEESTV+PLSVDQTPFRKDERTRIK AGGHVLTIDQIEGLE
Sbjct:  120 GDLCSNFTAQKLPKELESSLKLQGNYSSLDEDAIKEASKRAHVSTNEQLHATDFDDTLSGTTAISILLKGDTLFVANVGDSRAIICSKPPGEESTVRPLSVDQTPFRKDERTRIKQAGGHVLTIDQIEGLE 250          
BLAST of mRNA_E_fasciculatus_S2_contig7424.15597.1 vs.
Match: cGMP-dependent (protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL34_9PHAE)

HSP 1 Score: 238 bits (607), Expect = 2.540e-71
Identity = 120/131 (91.60%), Postives = 127/131 (96.95%), Query Frame = 1
Query:    1 GDLCSNFVAQKLPKEYESTLKLSGSYASLDEDAIKEASKRAHVSTNEQLHATDFDDTLSGTTAISVLLKGDTLFVANVGDSRAIICSKPPGEESTVKPLSVDQTPFRKDERTRIKAAGGHVLTIDQIEGLE 393
            GDLCSNFVAQKLPKE+ES L+L G+Y+SLDEDAIKEASKRAH+STNEQLHAT+FDDTLSGTTAISVLLKGDTLFVANVGDSRAIICSKPPGEES V+PLSVDQTPFRKDERTRIK AGGHVLTIDQIEGLE
Sbjct:   61 GDLCSNFVAQKLPKEFESRLELHGNYSSLDEDAIKEASKRAHMSTNEQLHATEFDDTLSGTTAISVLLKGDTLFVANVGDSRAIICSKPPGEESMVRPLSVDQTPFRKDERTRIKQAGGHVLTIDQIEGLE 191          
BLAST of mRNA_E_fasciculatus_S2_contig7424.15597.1 vs.
Match: cGMP-dependent (protein kinase n=8 Tax=Albugo candida TaxID=65357 RepID=A0A024GAX5_9STRA)

HSP 1 Score: 129 bits (325), Expect = 2.740e-32
Identity = 66/133 (49.62%), Postives = 88/133 (66.17%), Query Frame = 1
Query:    1 GDLCSNFVAQKLPKEYESTLKLSGSYASLDEDAIKEASKRAHVSTNEQLHATDFDDTLSGTTAISVLLKGDTLFVANVGDSRAIICSKPPGEES--TVKPLSVDQTPFRKDERTRIKAAGGHVLTIDQIEGLE 393
            GD+CS F A++LP+  E  +         ++ +I+ A  +AHV TN ++H   FDD++SGTT+ISVL  G  + VANVGDSRAII      +    T KPLS+DQTPFRKDER R+K  G  +LT+DQ+EGLE
Sbjct:  170 GDVCSQFAAEQLPRNMEKCMS--------EKISIQSALTQAHVQTNTEMHEASFDDSMSGTTSISVLFSGSEIHVANVGDSRAIIAKDDSNDSFNLTAKPLSIDQTPFRKDERERVKKCGARILTVDQVEGLE 294          
BLAST of mRNA_E_fasciculatus_S2_contig7424.15597.1 vs.
Match: cGMP-dependent (protein kinase n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WAG3_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.760e-31
Identity = 64/133 (48.12%), Postives = 90/133 (67.67%), Query Frame = 1
Query:    1 GDLCSNFVAQKLPKEYESTLKLSGSYASLDEDAIKEASKRAHVSTNEQLHATDFDDTLSGTTAISVLLKGDTLFVANVGDSRAIICSKPPGEESTV--KPLSVDQTPFRKDERTRIKAAGGHVLTIDQIEGLE 393
            GD+CS F A++LP+  E  +         ++ +I+ A  +AH+ TN ++H   FDD++SGTT+ISVL +G+ + VANVGDSRAII      +   +  KPLS+DQTPFRKDER R+K  G  +LT+DQ+EGLE
Sbjct:  153 GDVCSQFAAEQLPRHVEKCMS--------EKTSIQSALTQAHIHTNIEMHEASFDDSMSGTTSISVLFRGNEIHVANVGDSRAIIAKDDTKDTLNLVAKPLSIDQTPFRKDERERVKKCGARILTVDQVEGLE 277          
BLAST of mRNA_E_fasciculatus_S2_contig7424.15597.1 vs.
Match: cGMP-dependent (protein kinase n=20 Tax=Phytophthora TaxID=4783 RepID=H3GEM6_PHYRM)

HSP 1 Score: 124 bits (311), Expect = 2.100e-30
Identity = 72/139 (51.80%), Postives = 93/139 (66.91%), Query Frame = 1
Query:    1 GDLCSNFVAQKLPKEYESTLKLSGSYASLDED-AIKEASKRAHVSTNEQLHATDFDDTLSGTTAISVLLKGDTLFVANVGDSRAIIC------SKPPGEESTV-KPLSVDQTPFRKDERTRIKAAGGHVLTIDQIEGLE 393
            GD+CS F A++LP   E+ +K      +LDE+  I  A  RAHV TN  +H   FDD++SGTT+ISV+  G+ + V+NVGDSRAII       S   GE + V KPLS+DQTPFRKDER R+K  G  +LT+DQ+EGLE
Sbjct:  151 GDICSQFAAEQLP---ENIIK------NLDENMGILPALNRAHVQTNRAMHEASFDDSMSGTTSISVMFCGNEIHVSNVGDSRAIIAQENLKASTREGEANLVAKPLSIDQTPFRKDERVRVKKCGARILTVDQVEGLE 280          
BLAST of mRNA_E_fasciculatus_S2_contig7424.15597.1 vs.
Match: cGMP-dependent (protein kinase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L5V6_PLAHL)

HSP 1 Score: 123 bits (308), Expect = 5.340e-30
Identity = 69/138 (50.00%), Postives = 86/138 (62.32%), Query Frame = 1
Query:    1 GDLCSNFVAQKLPKEYESTLKLSGSYASLDEDAIKEASKRAHVSTNEQLHATDFDDTLSGTTAISVLLKGDTLFVANVGDSRAIIC------SKPPGEESTV-KPLSVDQTPFRKDERTRIKAAGGHVLTIDQIEGLE 393
            GD+CS F A++LPK     L+        +   I  A   AHV TN  +H   FDD++SGTT+ISVL  G+ + V+NVGDSRAII       S   GE   V KPLS+DQTPFRKDER R+K  G  +LT+DQ+EGLE
Sbjct:  143 GDICSQFTAEQLPKNIIQNLE--------ENVGILPALTLAHVQTNRAMHEASFDDSMSGTTSISVLFDGNEIHVSNVGDSRAIIAQENLKASTQEGEAKLVAKPLSIDQTPFRKDERVRVKKCGARILTVDQVEGLE 272          
BLAST of mRNA_E_fasciculatus_S2_contig7424.15597.1 vs.
Match: cGMP-dependent (protein kinase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7MK33_9STRA)

HSP 1 Score: 122 bits (307), Expect = 7.250e-30
Identity = 68/138 (49.28%), Postives = 88/138 (63.77%), Query Frame = 1
Query:    1 GDLCSNFVAQKLPKEYESTLKLSGSYASLDEDAIKEASKRAHVSTNEQLHATDFDDTLSGTTAISVLLKGDTLFVANVGDSRAIIC------SKPPGEESTV-KPLSVDQTPFRKDERTRIKAAGGHVLTIDQIEGLE 393
            GD+CS F A++LP+     ++        +   I  A  RAHV TN  +H   FDD++SGTT+ISVL  G+ + V+NVGDSRAII       S   GE + V KPLS+DQTPFRKDER R+K  G  +LT+DQ+EGLE
Sbjct:  156 GDICSQFAAEQLPENIIKNIE--------ENVGILPALTRAHVQTNRAMHEASFDDSMSGTTSISVLFCGNEIHVSNVGDSRAIIAQENLKASTREGEANLVAKPLSIDQTPFRKDERVRVKKCGARILTVDQVEGLE 285          
BLAST of mRNA_E_fasciculatus_S2_contig7424.15597.1 vs.
Match: cGMP-dependent (protein kinase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BU50_PYTIN)

HSP 1 Score: 122 bits (307), Expect = 7.280e-30
Identity = 69/139 (49.64%), Postives = 85/139 (61.15%), Query Frame = 1
Query:    1 GDLCSNFVAQKLPKEYESTLKLSGSYASLDEDAIKEASKRAHVSTNEQLHATDFDDTLSGTTAISVLLKGDTLFVANVGDSRAIICS---KPPGEESTV-----KPLSVDQTPFRKDERTRIKAAGGHVLTIDQIEGLE 393
            GD+C+ + AQ LP      L+        D   I  A  RAHV TN  +H   FDD++SGTTAISVL  G+ + +ANVGDSRAII     K P  E  V     KPLS+DQTPFRKDER R+K  G  +LT+DQ+EG+E
Sbjct:  161 GDVCAQYSAQHLPSNLTKHLQ--------DNVGILPALTRAHVETNRSMHEASFDDSMSGTTAISVLFCGNEIHIANVGDSRAIIAQENVKAPVSEDGVENLIAKPLSIDQTPFRKDERERVKKCGARILTVDQVEGIE 291          
BLAST of mRNA_E_fasciculatus_S2_contig7424.15597.1 vs.
Match: probable (protein phosphatase 2C 35 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D103E)

HSP 1 Score: 117 bits (294), Expect = 2.750e-29
Identity = 66/131 (50.38%), Postives = 90/131 (68.70%), Query Frame = 1
Query:    1 GDLCSNFVAQKLPKEYESTLKLSGSYASLDEDAIKEASKRAHVSTNEQLHATDFDDTLSGTTAISVLLKGDTLFVANVGDSRAIICSKPPGEESTVKPLSVDQTPFRKDERTRIKAAGGHVLTIDQIEGLE 393
            G  CSNFV  +L       +++  + A+L +D +K A K A +STN++LH++D DD++SGTTAI+ L+ GD L+VANVGDSRA+I  K  G     K LS DQTPFRKDE  R+K  G  VL++DQ+EGL+
Sbjct:  100 GSQCSNFVKDRL-------VEILSNDATLFDDPVK-AYKAAFLSTNDELHSSDIDDSMSGTTAITALVIGDGLYVANVGDSRAVIAIKD-GNRVLAKDLSYDQTPFRKDECERVKLFGARVLSVDQVEGLK 221          
BLAST of mRNA_E_fasciculatus_S2_contig7424.15597.1 vs.
Match: Protein-serine/threonine (phosphatase n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200Q1S2_9MAGN)

HSP 1 Score: 119 bits (299), Expect = 3.040e-29
Identity = 67/131 (51.15%), Postives = 88/131 (67.18%), Query Frame = 1
Query:    1 GDLCSNFVAQKLPKEYESTLKLSGSYASLDEDAIKEASKRAHVSTNEQLHATDFDDTLSGTTAISVLLKGDTLFVANVGDSRAIICSKPPGEESTVKPLSVDQTPFRKDERTRIKAAGGHVLTIDQIEGLE 393
            G  CSNFV  +L       +++  +  +L ED +K A   A ++TN +LH +D DDT+SGTTAI+VL+ GDT+FVANVGDSRA+I  K  G+    + LS DQTPFRKDE  R+K  G  VLT DQ+EGL+
Sbjct:  109 GAQCSNFVRDRL-------VEILSNDPTLSEDPLK-AYNSAFLATNSELHDSDIDDTMSGTTAITVLVSGDTIFVANVGDSRAVIAMKN-GDRVIAEDLSCDQTPFRKDEYERVKLCGARVLTADQVEGLK 230          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7424.15597.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
cGMP-dependent2.300e-7293.13protein kinase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
cGMP-dependent2.540e-7191.60protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
cGMP-dependent2.740e-3249.62protein kinase n=8 Tax=Albugo candida TaxID=65357 ... [more]
cGMP-dependent1.760e-3148.12protein kinase n=1 Tax=Albugo laibachii Nc14 TaxID... [more]
cGMP-dependent2.100e-3051.80protein kinase n=20 Tax=Phytophthora TaxID=4783 Re... [more]
cGMP-dependent5.340e-3050.00protein kinase n=1 Tax=Plasmopara halstedii TaxID=... [more]
cGMP-dependent7.250e-3049.28protein kinase n=3 Tax=Phytophthora kernoviae TaxI... [more]
cGMP-dependent7.280e-3049.64protein kinase n=1 Tax=Pythium insidiosum TaxID=11... [more]
probable2.750e-2950.38protein phosphatase 2C 35 n=1 Tax=Olea europaea va... [more]
Protein-serine/threonine3.040e-2951.15phosphatase n=1 Tax=Macleaya cordata TaxID=56857 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7424contigE_fasciculatus_S2_contig7424:2845..4523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score245.0
Seed ortholog evalue2e-62
Seed eggNOG ortholog2880.D7FLA4
Model size394
KEGG koko:K07376,ko:K14803,ko:K19477
KEGG Pathwayko04022,ko04270,ko04540,ko04611,ko04713,ko04714,ko04730,ko04740,ko04923,ko04924,ko04970,map04022,map04270,map04540,map04611,map04713,map04714,map04730,map04740,map04923,map04924,map04970
KEGG ModuleM00694
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944
Exons3
EggNOG free text desc.cGMP-dependent protein kinase activity
EggNOG OGsCOG0631@1,COG0664@1,KOG0614@2759,KOG0698@2759
EC2.7.11.12,3.1.3.16
Cds size393
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko01009,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842405.290308-CDS-E_fasciculatus_S2_contig7424:2844..30301696842405.290308-CDS-E_fasciculatus_S2_contig7424:2844..3030Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7424 2845..3030 -
1696842405.3040845-CDS-E_fasciculatus_S2_contig7424:3586..37511696842405.3040845-CDS-E_fasciculatus_S2_contig7424:3586..3751Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7424 3587..3751 -
1696842405.3141224-CDS-E_fasciculatus_S2_contig7424:4481..45231696842405.3141224-CDS-E_fasciculatus_S2_contig7424:4481..4523Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7424 4482..4523 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7424.15597.1prot_E_fasciculatus_S2_contig7424.15597.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7424 2845..4523 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7424.15597.1

>prot_E_fasciculatus_S2_contig7424.15597.1 ID=prot_E_fasciculatus_S2_contig7424.15597.1|Name=mRNA_E_fasciculatus_S2_contig7424.15597.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=131bp
GDLCSNFVAQKLPKEYESTLKLSGSYASLDEDAIKEASKRAHVSTNEQLH
ATDFDDTLSGTTAISVLLKGDTLFVANVGDSRAIICSKPPGEESTVKPLS
VDQTPFRKDERTRIKAAGGHVLTIDQIEGLE
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mRNA from alignment at E_fasciculatus_S2_contig7424:2845..4523-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7424.15597.1 ID=mRNA_E_fasciculatus_S2_contig7424.15597.1|Name=mRNA_E_fasciculatus_S2_contig7424.15597.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1679bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7424:2845..4523- (Ectocarpus fasciculatus EfasUO2)
GGCGATCTTTGCTCAAACTTCGTCGCTCAAAAGCTTCCCAAGGTCAGAAT AAACCTCAACACTATCAAATTTGCGAGAAAACAGCGTCAGGGCAGAGGTC AAGATGATCAGTATGAGGGCTAGTTCGCTCTGAGGCCTGGGCTGTCGTGG TCCTAATGTGTAGGCTTCCGTAAATAGCGTCAAAGGCAAGGCAGCCATAT TTATCTCAGGTGCTGCTTGGCTGTACAAGAAGTCCAAGGCCGGACGTTCT GAATCAGTCGGCTGTACCGAGCAGCGAAATTAACCGGTCTTTCGGGCCAG AGACGAGGTAGCGTTGTGTGCCACAGAGAACGTGAGCCCAAAGAGGCATA CTCGCGCCCTTTCAGAAACCGTTTTCGGACATTCTCGGGGGCAGCTAACG GAATTGCGATGCTGAGTTTAGCGTTAGGAGCCTTCGCCGGTATCAATACG GCTTTAACGACATTTACAACAACGAGGCCCAGGGTGCCCCTGAAGGGAGC GGGGCGACACCCACAGAGCCCTCAGCGGAGACAAATGTCTTCCGCAAGGG CACCGGCGGGTGTGGACGCAAAGTGTTTTCTCGATTGGCTTCAACATCAT AAATGTCGTTCAACGAACAGTTTTCACGGAGAAGTCCTATCGTTCCCCGA GACGATGTGCCGATGTTCCGAGCGCTACAGCTGTCGCCGACCCGAACGTG TAGAGGGTAAAATATACCTGGTCAAGTTGTAAGCGGTTGCAAACGTTCCT TATCCCTGAACGCATCGTGCAGGAGTACGAGAGTACCCTCAAACTCAGCG GCAGCTACGCATCTTTGGACGAAGACGCCATCAAAGAGGCCAGCAAGAGG GCGCACGTGTCGACCAACGAACAACTGCACGCCACTGATTTCGACGACAC GCTCTCCGGCACCACTGCGATATCGGTACTGCTCAAGGTAAGCCACAACA CAAATAATGTTGGTATTTTGAGGATCAACCGAGGTAGTCGGTCGTTCGTT TGGCTTCTGTTACTGGATATCGTGCCTGCTGCGTACTGTTCAAATTTCGG CCTGTTTCGTCAAACTATTGCGAAGCTTCCAACGCGATACCTCTGTCGCT CAAGAAACGCCGTATTGCTGCGACCTCCTCGCCGCAGTTTGGGTTGATTC TGTCCCGAGATCGATCTCCATTCCTTCTAGGGTGCTGTACATAACATCGG TGTTAACTACTATGCTCCGCGTTCCTCTCGATGTCGTCTTAGTTCTGCGG GAACCCCGACGGACATCTACGTATGACTTCGGCTTAGTTTCTTTTTGCTT TGGACAACTTTTTCCCGAAGTGTGTTTCTGGATCAAGCGTGGCTATATGG GAAGGTACGGGCACACAATGAATGTGCCGGCGGTAGAATCGACTACCCAC TTTTGTTTGCCCTTGCCGTTGTCTCAAGAGCAAGTCGGGGTTTTTGTTTT AGCCTGAGTCGTGGGCGATGCAACTGGTATGCGTGTCAAACAGGGGGATA CGCTGTTCGTAGCAAACGTGGGGGACTCTAGGGCCATCATCTGCTCCAAA CCACCCGGAGAAGAAAGCACGGTGAAACCCCTCTCGGTGGACCAGACACC CTTCCGCAAGGACGAGAGAACTCGCATCAAGGCTGCGGGGGGGCACGTGC TGACAATTGATCAGATCGAGGGGCTTGAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7424:2845..4523-

>mRNA_E_fasciculatus_S2_contig7424.15597.1 ID=mRNA_E_fasciculatus_S2_contig7424.15597.1|Name=mRNA_E_fasciculatus_S2_contig7424.15597.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=393bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7424:2845..4523- (Ectocarpus fasciculatus EfasUO2)
GGCGATCTTTGCTCAAACTTCGTCGCTCAAAAGCTTCCCAAGGAGTACGA
GAGTACCCTCAAACTCAGCGGCAGCTACGCATCTTTGGACGAAGACGCCA
TCAAAGAGGCCAGCAAGAGGGCGCACGTGTCGACCAACGAACAACTGCAC
GCCACTGATTTCGACGACACGCTCTCCGGCACCACTGCGATATCGGTACT
GCTCAAGGGGGATACGCTGTTCGTAGCAAACGTGGGGGACTCTAGGGCCA
TCATCTGCTCCAAACCACCCGGAGAAGAAAGCACGGTGAAACCCCTCTCG
GTGGACCAGACACCCTTCCGCAAGGACGAGAGAACTCGCATCAAGGCTGC
GGGGGGGCACGTGCTGACAATTGATCAGATCGAGGGGCTTGAG
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