mRNA_E_fasciculatus_S2_contig739.15567.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig739.15567.1 vs.
Match: 60S (ribosomal protein L38 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM71_ECTSI) HSP 1 Score: 142 bits (358), Expect = 5.150e-43 Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1
Query: 4 PKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQLQ 216
PKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQLQ
Sbjct: 2 PKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQLQ 72
BLAST of mRNA_E_fasciculatus_S2_contig739.15567.1 vs.
Match: Ribosomal (protein L38 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ21_9STRA) HSP 1 Score: 111 bits (277), Expect = 1.090e-30 Identity = 57/70 (81.43%), Postives = 61/70 (87.14%), Query Frame = 1
Query: 4 PKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQL 213
PKQIHDIRDFLQKARR+DAKSVKIK K TKFKIRCSRYLYTLCV DK+KADKLTQSLPPGL +K +
Sbjct: 2 PKQIHDIRDFLQKARRKDAKSVKIK--KTAEVTKFKIRCSRYLYTLCVADKDKADKLTQSLPPGLQRKDI 69
BLAST of mRNA_E_fasciculatus_S2_contig739.15567.1 vs.
Match: Aste57867_4412 (protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KGK6_9STRA) HSP 1 Score: 103 bits (258), Expect = 8.630e-28 Identity = 54/70 (77.14%), Postives = 59/70 (84.29%), Query Frame = 1
Query: 4 PKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQL 213
PKQI DIRDFLQKARR+DA+SVKIK K KFKIRCS+YLYTLCVTD EKADKLTQSLPPGL +K +
Sbjct: 2 PKQITDIRDFLQKARRKDARSVKIK--KTAQVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 69
BLAST of mRNA_E_fasciculatus_S2_contig739.15567.1 vs.
Match: 60S (ribosomal protein L38 n=16 Tax=Peronosporaceae TaxID=4777 RepID=W2IQQ0_PHYPR) HSP 1 Score: 103 bits (257), Expect = 1.230e-27 Identity = 54/70 (77.14%), Postives = 60/70 (85.71%), Query Frame = 1
Query: 4 PKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQL 213
PKQI DIRDFLQKARR+DA+SVKIK K+ KFKIRCS+YLYTLCVTD EKADKLTQSLPPGL +K +
Sbjct: 2 PKQITDIRDFLQKARRKDARSVKIK--KSDKVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 69
BLAST of mRNA_E_fasciculatus_S2_contig739.15567.1 vs.
Match: 60S (ribosomal protein L38 n=3 Tax=Oomycota TaxID=4762 RepID=A0A067CFE6_SAPPC) HSP 1 Score: 103 bits (257), Expect = 1.230e-27 Identity = 54/70 (77.14%), Postives = 59/70 (84.29%), Query Frame = 1
Query: 4 PKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQL 213
PKQI DIRDFLQKARR+DA+SVKIK K KFKIRCS+YLYTLCVTD EKADKLTQSLPPGL +K +
Sbjct: 2 PKQITDIRDFLQKARRKDARSVKIK--KTPQVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 69
BLAST of mRNA_E_fasciculatus_S2_contig739.15567.1 vs.
Match: Uncharacterized (protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BFU5_HYAAE) HSP 1 Score: 103 bits (257), Expect = 2.080e-27 Identity = 54/70 (77.14%), Postives = 60/70 (85.71%), Query Frame = 1
Query: 4 PKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQL 213
PKQI DIRDFLQKARR+DA+SVKIK K+ KFKIRCS+YLYTLCVTD EKADKLTQSLPPGL +K +
Sbjct: 21 PKQITDIRDFLQKARRKDARSVKIK--KSDKVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 88
BLAST of mRNA_E_fasciculatus_S2_contig739.15567.1 vs.
Match: Ribosomal (protein L38 n=2 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7ETU4_9STRA) HSP 1 Score: 102 bits (255), Expect = 2.470e-27 Identity = 55/70 (78.57%), Postives = 58/70 (82.86%), Query Frame = 1
Query: 4 PKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQL 213
PKQI DIRDFLQKARR DAK VKIK K TKFKIRCSR+LYTLCVTD EKADKLTQSLPPGL +K +
Sbjct: 2 PKQITDIRDFLQKARRSDAKLVKIK--KRDSQTKFKIRCSRFLYTLCVTDAEKADKLTQSLPPGLQRKSI 69
BLAST of mRNA_E_fasciculatus_S2_contig739.15567.1 vs.
Match: Ribosomal (protein L38 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0E5_AURAN) HSP 1 Score: 101 bits (251), Expect = 1.010e-26 Identity = 54/70 (77.14%), Postives = 58/70 (82.86%), Query Frame = 1
Query: 4 PKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQL 213
PK+I DIRDFLQKARRRDAKSVKIK K KFKIRCSRYLYTL V+D EKADKLTQSLPPGL +K +
Sbjct: 2 PKEISDIRDFLQKARRRDAKSVKIKKTKGV--VKFKIRCSRYLYTLRVSDTEKADKLTQSLPPGLQRKDI 69
BLAST of mRNA_E_fasciculatus_S2_contig739.15567.1 vs.
Match: Uncharacterized (protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=H3G589_PHYRM) HSP 1 Score: 100 bits (250), Expect = 1.220e-26 Identity = 53/65 (81.54%), Postives = 57/65 (87.69%), Query Frame = 1
Query: 1 QPKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPG 195
QPKQI DIRDFLQKARR+DA+SVKIK K+ KFKIRCS+YLYTLCVTD EKADKLTQSLPPG
Sbjct: 1 QPKQITDIRDFLQKARRKDARSVKIK--KSDKVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPG 63
BLAST of mRNA_E_fasciculatus_S2_contig739.15567.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQ98_GLOUD) HSP 1 Score: 100 bits (250), Expect = 1.640e-26 Identity = 54/70 (77.14%), Postives = 59/70 (84.29%), Query Frame = 1
Query: 4 PKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQL 213
PKQI DIRDFLQKARR+DA+SVKIK KA KFKIRCS+YLYTL VTD EKADKLTQSLPPGL +K +
Sbjct: 7 PKQITDIRDFLQKARRKDARSVKIK--KADKVVKFKIRCSKYLYTLVVTDAEKADKLTQSLPPGLQRKDI 74 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig739.15567.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig739.15567.1 >prot_E_fasciculatus_S2_contig739.15567.1 ID=prot_E_fasciculatus_S2_contig739.15567.1|Name=mRNA_E_fasciculatus_S2_contig739.15567.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=73bp QPKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTback to top mRNA from alignment at E_fasciculatus_S2_contig739:14448..17727+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig739.15567.1 ID=mRNA_E_fasciculatus_S2_contig739.15567.1|Name=mRNA_E_fasciculatus_S2_contig739.15567.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3280bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig739:14448..17727+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig739:14448..17727+ >mRNA_E_fasciculatus_S2_contig739.15567.1 ID=mRNA_E_fasciculatus_S2_contig739.15567.1|Name=mRNA_E_fasciculatus_S2_contig739.15567.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=219bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig739:14448..17727+ (Ectocarpus fasciculatus EfasUO2)back to top |