mRNA_E_fasciculatus_S2_contig7360.15548.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7360.15548.1
Unique NamemRNA_E_fasciculatus_S2_contig7360.15548.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7360.15548.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU58_ECTSI)

HSP 1 Score: 207 bits (526), Expect = 1.170e-65
Identity = 112/170 (65.88%), Postives = 119/170 (70.00%), Query Frame = 1
Query:    1 CVDILSLCVLPVHAYILSRNNKGRWTKDEHERFLSVAGQLVKSKENWKWISQVVVTTRSPAQVRTHAQKYFRKIGQGLPFPDEGGQDSRLDPHVAAXXXXXXXXXXXXXXXXLGHDLDGGMFLPSGXXXXXXXXXXLWGDASVAYAGXXXXXXXFSMTDDSGGGFPLDNW 510
            CVDI+SLCVL   + ILSRN KGRWTKDEHERFLSVAGQL K+KE+W+WISQVVVTTRSPAQVRTHAQKYFRKIGQGLPFPDEGGQD+ LDPHVAA                LGHDLDGGMFLPSG          LW DASV               D  GGGFPLD+W
Sbjct:    9 CVDIISLCVLAA-SRILSRN-KGRWTKDEHERFLSVAGQLGKNKESWRWISQVVVTTRSPAQVRTHAQKYFRKIGQGLPFPDEGGQDTSLDPHVAAAVAAETAAGAAA----LGHDLDGGMFLPSGSGGASSALAPLWADASVG--------------DADGGGFPLDSW 158          
BLAST of mRNA_E_fasciculatus_S2_contig7360.15548.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL6_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 1.490e-37
Identity = 68/82 (82.93%), Postives = 74/82 (90.24%), Query Frame = 1
Query:    4 VDILSLCVLPVHAYILSRNNKGRWTKDEHERFLSVAGQLVKSKENWKWISQVVVTTRSPAQVRTHAQKYFRKIGQGLPFPDE 249
            V+++SL VL   + ILSRN KGRWTKDEHERFL VAGQL K+KE+WKWISQVVVTTRSPAQVRTHAQKYFRKIGQGLPFPDE
Sbjct:   33 VNVISLGVLAA-SRILSRN-KGRWTKDEHERFLCVAGQLGKNKESWKWISQVVVTTRSPAQVRTHAQKYFRKIGQGLPFPDE 112          
BLAST of mRNA_E_fasciculatus_S2_contig7360.15548.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L659_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 2.460e-34
Identity = 99/258 (38.37%), Postives = 106/258 (41.09%), Query Frame = 1
Query:   34 VHAYILSRNNKGRWTKDEHERFLSVAGQLVKSKENWKWISQVVVTTRSPAQVRTHAQKYFRKIGQGLPFPDE--------------------------------------------------------------------------------------------GGQDSRLDPHVAAXXXXXXXXXXXXXXXXLGHDLDGGMFLPSGXXXXXXXXXX----LW---GDASVAYAGXXXXXXXFSMTDDSGGGFPLDNW 510
            +H+Y LSRN KGRWTKDEHERFLSVAGQL K+ E+WKWIS+ VVTTRSPAQVRTHAQKYF++IGQG PFPDE                                                                                            G QDS LDPHVAA                LGHDLD GMFLPSG              LW   GDAS A           SM  D   G PLDNW
Sbjct:   13 LHSYKLSRN-KGRWTKDEHERFLSVAGQLGKTTESWKWISKFVVTTRSPAQVRTHAQKYFQRIGQGRPFPDENEXXXXXXXXXXXXXXXXXXXXXXQIMATPDDARCHSPPSSGLMAVVKVPSVVSLINSYDDCGGFPQAGGIPALPPSLCSPCGLFPGFTPEQGWQDSSLDPHVAAASAETAAGAAA-----LGHDLDRGMFLPSGGSGEGSSAPPPLPPLWSGIGDASGASC-----CGSLSMPYDGSSGSPLDNW 259          
BLAST of mRNA_E_fasciculatus_S2_contig7360.15548.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU61_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 7.280e-31
Identity = 57/75 (76.00%), Postives = 63/75 (84.00%), Query Frame = 1
Query:   49 LSRNNKGRWTKDEHERFLSVAGQLVKSKENWKWISQVVVTTRSPAQVRTHAQKYFRKIGQGLPFPDEGGQDSRLD 273
            + R NKGRWTKDEHERFLSV GQL K+ E+WK IS+ VVTTRSPAQVRTHAQKYF++IGQG PFPDE   D RLD
Sbjct:    1 MRRRNKGRWTKDEHERFLSVVGQLGKTTESWKLISKFVVTTRSPAQVRTHAQKYFQRIGQGRPFPDEPYADDRLD 75          
BLAST of mRNA_E_fasciculatus_S2_contig7360.15548.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC35_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.360e-9
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 1
Query:   61 NKGRWTKDEHERFLSVAGQLVKSKENWKWISQVVVTTRSPAQVRTHAQKYFRKIGQGLPFPDE 249
            N GRWTK+EH+ FL     LV   +NW  I+ +V  TRS  QVRTH QKYF+K+ +G  FP+E
Sbjct:    6 NNGRWTKEEHDAFLQ---GLVLHGKNWDLIAPIV-KTRSAVQVRTHGQKYFKKVDKGERFPEE 64          
BLAST of mRNA_E_fasciculatus_S2_contig7360.15548.1 vs.
Match: HTH (myb-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL1_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 5.280e-9
Identity = 32/63 (50.79%), Postives = 39/63 (61.90%), Query Frame = 1
Query:   55 RNNKGRWTKDEHERFLSVAGQLVKSKENWKWISQVVVTTRSPAQVRTHAQKYFRKIGQGLPFP 243
            R NKG+WT++EHE FLS   Q   +       S  +V TRS  Q+RTHAQKYF KI +G  FP
Sbjct:    5 RKNKGKWTREEHEAFLSGLWQHESN-------SHALVPTRSALQIRTHAQKYFDKIERGEKFP 60          
BLAST of mRNA_E_fasciculatus_S2_contig7360.15548.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA96_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 5.590e-9
Identity = 40/90 (44.44%), Postives = 42/90 (46.67%), Query Frame = 1
Query:  241 PDEGGQDSRLDPHVAAXXXXXXXXXXXXXXXXLGHDLDGGMFLPSGXXXXXXXXXXLWGDASVAYAGXXXXXXXFSMTDDSGGGFPLDNW 510
            P EGGQDS LDPHVAA                LGHDLD GMFLPSG          LW DA V  AG              GGGF L++W
Sbjct:   83 PGEGGQDSCLDPHVAAAAAAETAAGAAA----LGHDLDEGMFLPSGGGGGASALPPLWADAGVGDAG--------------GGGFLLESW 154          
BLAST of mRNA_E_fasciculatus_S2_contig7360.15548.1 vs.
Match: probable (transcription factor At5g61620 n=2 Tax=Quercus suber TaxID=58331 RepID=UPI000CE1DF32)

HSP 1 Score: 59.7 bits (143), Expect = 2.290e-8
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 1
Query:   70 RWTKDEHERFLSVAGQLVKSKENWKWISQVVVTTRSPAQVRTHAQKYF 213
            RWT++EH+ FLS   QL   K +WK ISQ  VTT++PAQ+ +HAQKYF
Sbjct:   84 RWTEEEHKLFLSGLNQL--GKHDWKEISQKFVTTKTPAQIASHAQKYF 129          
BLAST of mRNA_E_fasciculatus_S2_contig7360.15548.1 vs.
Match: Uncharacterized (protein n=2 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6Y653_HORVV)

HSP 1 Score: 60.5 bits (145), Expect = 4.300e-8
Identity = 28/66 (42.42%), Postives = 44/66 (66.67%), Query Frame = 1
Query:   34 VHAYILSRNNKGRWTKDEHERFLSVAGQLVKSKENWKWISQVVVTTRSPAQVRTHAQKYFRKIGQG 231
            +H ++++ + +  WT +EH  FL   G   + K  WK IS+ +VTT++P QV +HAQKYFR+I +G
Sbjct:  114 IHPHVIAPSARKYWTDEEHMLFLHGLGVYGRGK--WKEISKYLVTTKTPVQVSSHAQKYFRRIKKG 177          
BLAST of mRNA_E_fasciculatus_S2_contig7360.15548.1 vs.
Match: Uncharacterized (protein n=2 Tax=Setaria TaxID=4554 RepID=K3XYL4_SETIT)

HSP 1 Score: 60.5 bits (145), Expect = 9.350e-8
Identity = 31/59 (52.54%), Postives = 37/59 (62.71%), Query Frame = 1
Query:   49 LSRNNKGRWTKDEHERFLSVAGQLVKSKENWKWISQVVVTTRSPAQVRTHAQKYFRKIG 225
            + R   G WT  EH  FL   G  V  + NWK IS+  VTTR+P QV +HAQKYFR+IG
Sbjct:  120 MQRLRTGFWTMPEHRLFLR--GLQVYGRGNWKNISKYFVTTRTPVQVSSHAQKYFRRIG 176          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7360.15548.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.170e-6565.88protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.490e-3782.93protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.460e-3438.37protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.280e-3176.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.360e-952.38protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
HTH5.280e-950.79myb-type domain-containing protein n=1 Tax=Ectocar... [more]
Uncharacterized5.590e-944.44protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
probable2.290e-858.33transcription factor At5g61620 n=2 Tax=Quercus sub... [more]
Uncharacterized4.300e-842.42protein n=2 Tax=Hordeum vulgare subsp. vulgare Tax... [more]
Uncharacterized9.350e-852.54protein n=2 Tax=Setaria TaxID=4554 RepID=K3XYL4_SE... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7360contigE_fasciculatus_S2_contig7360:4020..5484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score121.7
Seed ortholog evalue3.3e-25
Seed eggNOG ortholog2880.D8LU61
Model size513
Hectar predicted targeting categorysignal peptide
Exons2
EggNOG free text desc.Myb-like DNA-binding domain
EggNOG OGs2EA1V@1,2SGBG@2759
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-16_000320.1
Cds size513
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842399.9659588-CDS-E_fasciculatus_S2_contig7360:4019..42831696842399.9659588-CDS-E_fasciculatus_S2_contig7360:4019..4283Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7360 4020..4283 -
1696842399.9763734-CDS-E_fasciculatus_S2_contig7360:5235..54841696842399.9763734-CDS-E_fasciculatus_S2_contig7360:5235..5484Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7360 5236..5484 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7360.15548.1prot_E_fasciculatus_S2_contig7360.15548.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7360 4020..5484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7360.15548.1

>prot_E_fasciculatus_S2_contig7360.15548.1 ID=prot_E_fasciculatus_S2_contig7360.15548.1|Name=mRNA_E_fasciculatus_S2_contig7360.15548.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=171bp
CVDILSLCVLPVHAYILSRNNKGRWTKDEHERFLSVAGQLVKSKENWKWI
SQVVVTTRSPAQVRTHAQKYFRKIGQGLPFPDEGGQDSRLDPHVAAAAAS
AAATETAAGAAALGHDLDGGMFLPSGGGGASSTLPPLWGDASVAYAGGAS
GGGSFSMTDDSGGGFPLDNW*
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mRNA from alignment at E_fasciculatus_S2_contig7360:4020..5484-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7360.15548.1 ID=mRNA_E_fasciculatus_S2_contig7360.15548.1|Name=mRNA_E_fasciculatus_S2_contig7360.15548.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1465bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7360:4020..5484- (Ectocarpus fasciculatus EfasUO2)
TGTGTTGATATTCTCTCGTTGTGTGTACTTCCTGTACATGCATACATACT CAGCCGCAACAACAAAGGTCGCTGGACGAAGGACGAGCACGAGCGGTTTC TCTCCGTGGCGGGACAGTTGGTCAAGAGCAAAGAGAACTGGAAGTGGATT TCTCAGGTTGTCGTGACGACCCGGTCGCCTGCCCAGGTTCGCACCCACGC GCAGAAGTACTTTCGGAAAATCGGTCAGGGGCTGCCATTTCCCGACGAGG TACGCCGATCGTACGTACGTAGGTAGGTTTCCTAGAGATGGGTTGATGTT TGCTGAAGCAGCCACCTGCTGCGGACTTATCTTGTGCATTGTTTGGTGGC GGTGTCGTGTAGGGGGGATGGACCGTGGCAAGAAAAGTTCTGCAGGTGCC GTCATGTTTCAGAGATGCTTAGACTTGTTCCGCAGAATGCGTCGAGTCCT CGAAACGTGTTTTACTTGAGTGCCAACATAAAACAACATAACTAACCCGG TAACCATTCCGTTGTTATGTCAATGGATTTTGGCTGGCACCGAGTTCCAC TCACGAAAGAGGTGTGCATGTATGTGTGCATGCGCGTGTGTCTGGGTGGC CGGCGTTACTATGCGGTTTTAAACGGCGGGAAGTGATATCGATAGGATAG ATCGGGCCAAGTAGGAAGGAACATTTGGCCATCGGTGATCGGTCCTGTTG GAACAATGCTCCGTCCTCTCGAGGACGCGTGGTCAACGGTCTAACCGCCA AGGCATGCGAAGTATATAAGAGTAGGCCTCCACCCCCCCGCCCCCCCCCC GCTGCGTGCGTCACCACTAGCCGTATACCAACGATCGCGTTAACGACTGT GAGAACGACGAAGGAGAGGGAGAAGAGGAGGAGGAGGAGAAAGAAGGAGA AGAAGAAGAGGAGGAGGAAGAAGAAGAAGAAACCGTCTCGCATGCTGCTG GAGGGGGAACAACTCTCGACGGTGCTGGACGGTACCCTCTCCCATCTACC GCTCTCTCTGGTGGGCAGATGAGTTTGGCAGGGGCACCAGTCATGGTTTC TCCAGGTCCGAGTCGAATCATGCCCAGCCATAACTACGAAGACGGCGGCG GTGCCGCTTCGGGGGGCAGTTTCCACCACGCCGTCGGTGCCCCCGCTCTG CCGTCGCTGTGCTTCCCCTACGGGGTCGCTCCCGGCTTCGCCCCAGGACA GGGCGGGCAAGACTCTCGTCTGGACCCACACGTAGCAGCGGCGGCGGCTT CGGCGGCGGCGACGGAAACGGCGGCAGGGGCGGCTGCGCTCGGCCACGAC TTGGACGGAGGCATGTTCTTGCCCAGCGGCGGTGGGGGGGCGTCATCGAC TCTGCCGCCGCTGTGGGGCGATGCTAGCGTCGCATATGCCGGCGGGGCCA GCGGTGGGGGATCGTTCTCGATGACCGATGACAGCGGAGGTGGCTTTCCG CTGGACAACTGGTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7360:4020..5484-

>mRNA_E_fasciculatus_S2_contig7360.15548.1 ID=mRNA_E_fasciculatus_S2_contig7360.15548.1|Name=mRNA_E_fasciculatus_S2_contig7360.15548.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=513bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7360:4020..5484- (Ectocarpus fasciculatus EfasUO2)
TGTGTTGATATTCTCTCGTTGTGTGTACTTCCTGTACATGCATACATACT
CAGCCGCAACAACAAAGGTCGCTGGACGAAGGACGAGCACGAGCGGTTTC
TCTCCGTGGCGGGACAGTTGGTCAAGAGCAAAGAGAACTGGAAGTGGATT
TCTCAGGTTGTCGTGACGACCCGGTCGCCTGCCCAGGTTCGCACCCACGC
GCAGAAGTACTTTCGGAAAATCGGTCAGGGGCTGCCATTTCCCGACGAGG
GCGGGCAAGACTCTCGTCTGGACCCACACGTAGCAGCGGCGGCGGCTTCG
GCGGCGGCGACGGAAACGGCGGCAGGGGCGGCTGCGCTCGGCCACGACTT
GGACGGAGGCATGTTCTTGCCCAGCGGCGGTGGGGGGGCGTCATCGACTC
TGCCGCCGCTGTGGGGCGATGCTAGCGTCGCATATGCCGGCGGGGCCAGC
GGTGGGGGATCGTTCTCGATGACCGATGACAGCGGAGGTGGCTTTCCGCT
GGACAACTGGTAA
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