mRNA_E_fasciculatus_S2_contig7320.15512.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7320.15512.1
Unique NamemRNA_E_fasciculatus_S2_contig7320.15512.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7320.15512.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQA8_ECTSI)

HSP 1 Score: 235 bits (600), Expect = 1.710e-73
Identity = 121/124 (97.58%), Postives = 121/124 (97.58%), Query Frame = 3 
Query:   18 MPHTAGQGLARHRLPGDMRGGEEEEEAGSD--ARESSERYFSARWMLERERAREESDDCSQAFAIIPVVGVCLMVLYVVWLDQASQGLLVWLAGGSPLAELVPFKMLGEMVGGGDEMAIPGAYA 383
            MPHTAGQGLARHRLPGD RGGEEEEEAGSD  ARESSERYFSARWMLERERAREESDDCSQAFAIIPVVGVCLMVLYVVWLDQASQGLLVWLAGGSPLAELVPFKMLGEMVGGGDEMAIPGAYA
Sbjct:    1 MPHTAGQGLARHRLPGDTRGGEEEEEAGSDHDARESSERYFSARWMLERERAREESDDCSQAFAIIPVVGVCLMVLYVVWLDQASQGLLVWLAGGSPLAELVPFKMLGEMVGGGDEMAIPGAYA 124
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7320.15512.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.710e-7397.58protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQA8... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7320contigE_fasciculatus_S2_contig7320:222..4852 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1331
Hectar predicted targeting categorysignal anchor
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_005490.1
Cds size369
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842396.2892456-UTR-E_fasciculatus_S2_contig7320:221..2381696842396.2892456-UTR-E_fasciculatus_S2_contig7320:221..238Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7320 222..238 +
1696842396.332369-UTR-E_fasciculatus_S2_contig7320:3907..48521696842396.332369-UTR-E_fasciculatus_S2_contig7320:3907..4852Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7320 3908..4852 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842396.3007984-CDS-E_fasciculatus_S2_contig7320:238..4371696842396.3007984-CDS-E_fasciculatus_S2_contig7320:238..437Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7320 239..437 +
1696842396.315236-CDS-E_fasciculatus_S2_contig7320:3737..39071696842396.315236-CDS-E_fasciculatus_S2_contig7320:3737..3907Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7320 3738..3907 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7320.15512.1prot_E_fasciculatus_S2_contig7320.15512.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7320 239..3907 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7320.15512.1

>prot_E_fasciculatus_S2_contig7320.15512.1 ID=prot_E_fasciculatus_S2_contig7320.15512.1|Name=mRNA_E_fasciculatus_S2_contig7320.15512.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=123bp
MPHTAGQGLARHRLPGDMRGGEEEEEAGSDARESSERYFSARWMLERERA
REESDDCSQAFAIIPVVGVCLMVLYVVWLDQASQGLLVWLAGGSPLAELV
PFKMLGEMVGGGDEMAIPGAYA*
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mRNA from alignment at E_fasciculatus_S2_contig7320:222..4852+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7320.15512.1 ID=mRNA_E_fasciculatus_S2_contig7320.15512.1|Name=mRNA_E_fasciculatus_S2_contig7320.15512.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4631bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7320:222..4852+ (Ectocarpus fasciculatus EfasUO2)
GCTTCTCTACCGCAATAATGCCTCACACAGCTGGGCAAGGATTGGCGCGG
CATCGCTTGCCAGGGGACATGAGGGGGGGGGAGGAGGAGGAGGAAGCGGG
AAGCGATGCGAGAGAATCATCGGAGAGGTACTTCTCCGCGAGGTGGATGC
TGGAGAGGGAGAGGGCACGAGAAGAATCGGACGACTGCTCACAAGCTTTC
GCAATCATCCCCGTGGGTAAGTCAGTCGTAGGGGCCTCCCGTCCATCTCA
GCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGGCACAGCGGA
AAGCAGCAAATCGTATTATTGTTTGCTCGCGTGGCTCGGTCGGTCACATT
TTTTTTTTGTTGTTGTGTCGATTGGCGCGGTGGCGTCACATGACGACACC
GCTTGCTTCTACCCTCGCAGCAGGTGAACAGCAGTACTTGGAACATCCCC
ACCTCGGAACGAATGAAACGTCGGCAGACAAACGGGGTGGGTTAAACGTC
GATAACGCGTGCGCTTGGGTGATCAAAACTCGGCAATCACGATATCCGAT
GTATTGCGTTGGTTGTTGGTTTGCCACCGCCGCAGCGCCCGCGGATACAA
ATTGTCAGAAGAAAGAGCAGCTGCCATGACGGCCGCTGCCTGTGACGAAA
ACAACAGATGGTCTGCTCAAGGCTGCGTTCTACGTGTATGAGCTCTGTTT
GATGATCTACGGTACCCTGCCCGCTGTTGACCTATGGCAGGGTGTTGATT
GTAAGGGGGGTTGCTTCAACCTTCCGCCTGTTGCGAACAGCAGAAGTCGC
TCTTTTCTTACCGCCGGGGCGTCCCTAGTAGCTAGAGGTGAGTAAGCTTC
CACACACCCTCATTCTGTCTGCTTTCTTGTAACTCCTCAAGAGCCCGGAA
AAAAAGTGGTGCTTCGCAACACATCCTTCTTTGCAAGTCACGGAAGAGTG
TCAGCCTCAATTCGAGGTTTTCGTCACATCACATCATTAACATACAATAC
ATATGAGAGCCTGGAACACCGAAGTGGTCTGGTTTTATATTTTGTCGTGG
ATCGAGAGTCGGAAAACATGGAGCAGTGTTTTGACTCCTCCCTTCCAAGT
AGTCTAAATTTGTGTGCGTGCTGCGGCCGAGACCCATTTGTGTTGTGTGT
CGAAGACATATTCTCGCGCGATTTCCCATTTACAATCAACTCCACGCGCC
CTCGTCAGGCAATGGGAGAACGATGGTGCACCGCCATGAGAGAAACACGA
AGGCTCTTTCTCTTAGCCACACCTATCCCCAGCTGCCTTTCCGCGGACCG
CCTTCGCGAATTGTTGTTAGTATACTCACCATGAAATAGAGGGTGGGGGG
TTCGTATCCCTAAGAAAACCAAGCTTAATTTATCCTCGCGAAGCCAACTG
CTCTCCACGGCATGTTGTGTGTAGTGCGAGCCGCCCAAGCGCGATTGTGC
CTTGCACACCGTTGGCTTGAACCATGAAAAACAGCCAGGCCTATGTATGG
TACCTGCTACATAGTCCTACCAAACACACCTTCCAGCTCTCAAGAGGGAA
GCACCGCATGCAGCTCCATGTGGGCCGTATTCCCCGGACCACAAAACTAT
TATAGCATCAATCTTTCTGGTACCACGATACTATATTTTGCGTCAACCTT
TACCTTTCTGGTATGCACACCACGATACTATGTATACTAATTATATATCA
ACTCGACCCGGTGCCGCGACCGCTCACCTCAGCATCAGCGTTCTCGTCGT
CACAACCATGTACATACCAAAAGCACGCCTACACCACTGGTGTACTTCGA
TGTACATTTTTTTTACGTTTCGTACCCATGTAAATTGTTCTGGGCGCCAG
TCTAGACCGTTCTTTCGTTACATGTTGACGAACCAGCCGGGGTGACACCG
ACAGAAGGAATTCTCCAACTTTCCTCCTGGGTTAGGCTTAGCTGCCTCTT
CTCTGCTTGTTGCGGACACGGAACACTGCTGTCACGTATACTCACGACTA
TTATATGCCCTCTTCGCTTGTAAGATGCGAGCTTTCTCACTACGGAGATA
TTCAGACCCGCGACCTAGAGCCATAACGCTTCGCGAGGTTACCAAACTGA
AACCACTAACCTACTGGTACGTGACCGAGGTATTCCCACGTGGTTATTGA
TACACTGAAGATGATTAATTCTCAAATATATTGAACGTGTTTGTGTATCC
GTGGTTATGAAGTCAAGGGCATGATCGCAATCGATTTATACGTGCTACAG
GACGTACGTACCTGTGTTTATACGGATCCGTGAGAACCCGAGCAACCGGC
TTGTCAGGACAAACTGGTGGCCATCTCAATATTGAGTTTTTGCTACACTC
AAGAACTCAAGCTGACGATACCGTCCAGAGGACGTGGTGGCAGCATTGCC
AGCGTTACCCGATTCGGTATGACGCGAGAGAAACGTGCTGACCCCCTGCA
ACTGCTCCTGTGTGCCCTCAAGGCAAACGGGCAGCGAATTTCTGAAGTCA
CGAGGTCTAACCAACATGAAATTAGCCCCAAGAAAAGCCCAAGAAGGGAG
GGAGACCCACCACCTGTTCAACTCGGAAAGCTAAAATAGAGTACAGTACG
CGTTAGCGCTACAAATCAAAAATAAGACCGAAGCCGAAGAAGCCGTTGTT
TGCTGTTAAACTATGTGGAGGAAGCCATATGACGATGCGTTGCCATGGGT
ATTTGGCATTATCAGAGTTTACCGTATGCGTTGCCATGGGTATTGGCGTT
ATCAGAGTTTACGTTATCACGTCATGGCAAGATTCAAAGTTATTCTGAGT
CATGTATGTATCGTTCTGTTCAGCGTGGGTGTGTAGGTGTTGCGCTTGGT
CTAGTTTGTGTTGAATTCCGGCTGCATGGTATACGTGCACGGCGGTAGGA
AAGCATCCTCAGGGAGAATAAAGGAAAGCAGCAACAAGCTGCATATGTGG
TCGAACTACTGCTGTAGTTCCACACAGTCCGAAGGTGACTACACAGGTGC
AAATCACGTTGCTGTTGTAGCACTCCTTTACGAACATGTCGTGGTTCACC
AACCCTATTAACGGCCATTAGTTAACGGTAATATACTCTTGGTTTGGAAT
CCCGGTCTCCCCCCACACACACAACTACCTGCACGTGCAGGGTAGGCATT
CGCCAAGTGTACATTTTCCGTAGAGTTGAAAGCAGGCCATTGGCATACCT
ACACTTGTTCCGATGCACGTGCGTGTGTTGAACGACACTGGGTATTACGC
CACACAAGATTCAGACACACAGACTAGTCGTTCATGGGCAGGGAGGCAAC
GACATGAAGTTGTTTTTGTGTAGACCTTGGGGGCTCTTGGTGCGAATCAA
GCTAGGTATTTGTAGCCCAATCCTCCAAACGCACATGCGGGCCCCTCCAA
GCACCCGACCCCGCTGCTCTCCGACACACCCTCCAACACGCTCTGCTCCC
CACGTTTTCGCACCCCCTTGTTTATCTTCCCCGCGGCGGCCGATGCTTCT
GGTTTGCCCACACCAGTCGGGGTGTGCCTGATGGTCCTGTACGTGGTGTG
GCTGGACCAGGCGTCGCAAGGGCTACTCGTTTGGTTGGCGGGGGGATCGC
CGCTGGCGGAGCTCGTTCCTTTCAAAATGCTCGGGGAGATGGTCGGTGGG
GGCGATGAAATGGCGATTCCTGGGGCCTACGCATGACATTACACCGCGCA
TGGGAGTGTGTGCGGTGGAGCGGCGGGGGGGGTTACAGAATGGCATGGGT
GGTCGGAAAGAGCGCCGTAGACGCGGGTGTATGTCCCGAACGTCCTGAAT
GTAACAACACGGATTTTTGTCTCGACCACGGAAGCCGCTCTAAAGAACGG
GGGCAGTTGAGCGTTGATCCTTGACGGGGGAGGGTTGTGCCCAACTCACT
GGTGAGGGCAGAAGACGTTGTGGTTGTGCGGGGGGGGCATTGTTTATTCG
AGTTGGAAATGGTTGTGCACGATTTACCATGAAAATCGCGTTCGCGCGGT
TTGAAAAATCGGGACACACAGGTGGGGCCTAGCGTGTTACATTCGAAGCC
ATTTGTCGATATCAGGAGAGCCGAAAGGTAGATGCCGGTCACTGCCTGTT
TCTTGATGCCGGTCACTGCCTGTTTCTTGATGCCGGTCACTGCCTGTTTC
TTGCCGCCGAAAAAAAAGTAGGGGTTTGATTTTTGGCGTCACCCTCGAAT
TTAGAAAGAAATGAAGGGGTTCGGCGCTTTGTTTGTCGTTGTCGTGGTGA
AAGCACTTCACGCGTGTTGATTGTTGTTGTGGTCTATCGTTGGGTGGCGG
GGTAATTTTTTTTTTTTCTGTTTGCAAGCGGTTTCGCAATAGAACGGCGG
CCGCCTCCCCGGTTTTCCCAGAAAGAGGCGTGTTGTATCTCGTGTTGTGT
TTTGTGTGGATGTTTCGTGGTCGCTTGTTTTCTTCTCTGGATCATTTTTG
GTGAGTCATGATAAATCGGTTGAGAGAAGCTCTGTAGACGAAACCCCTCT
TGTTCTCGTGCGAGCTTCTTTTCATGCGTCTTGTTCATATTTTTTGTTGT
GTGGTAATCATCAGCGTTAGCCGTACGGGCGCGGGAAAAGAATGCTGTCT
AACGCTTTGTGCTCGCCCGCGTTGGTATCAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7320:222..4852+

>mRNA_E_fasciculatus_S2_contig7320.15512.1 ID=mRNA_E_fasciculatus_S2_contig7320.15512.1|Name=mRNA_E_fasciculatus_S2_contig7320.15512.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=369bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7320:222..4852+ (Ectocarpus fasciculatus EfasUO2)
ATGCCTCACACAGCTGGGCAAGGATTGGCGCGGCATCGCTTGCCAGGGGA
CATGAGGGGGGGGGAGGAGGAGGAGGAAGCGGGAAGCGATGCGAGAGAAT
CATCGGAGAGGTACTTCTCCGCGAGGTGGATGCTGGAGAGGGAGAGGGCA
CGAGAAGAATCGGACGACTGCTCACAAGCTTTCGCAATCATCCCCGTGGT
CGGGGTGTGCCTGATGGTCCTGTACGTGGTGTGGCTGGACCAGGCGTCGC
AAGGGCTACTCGTTTGGTTGGCGGGGGGATCGCCGCTGGCGGAGCTCGTT
CCTTTCAAAATGCTCGGGGAGATGGTCGGTGGGGGCGATGAAATGGCGAT
TCCTGGGGCCTACGCATGA
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