mRNA_E_fasciculatus_S2_contig731.15502.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig731.15502.1
Unique NamemRNA_E_fasciculatus_S2_contig731.15502.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig731.15502.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig731contigE_fasciculatus_S2_contig731:6998..12308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size2264
Hectar predicted targeting categoryother localisation
Exons10
Cds size1380
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig731.15502.1prot_E_fasciculatus_S2_contig731.15502.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig731 7025..11451 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842395.2973447-UTR-E_fasciculatus_S2_contig731:6997..70241696842395.2973447-UTR-E_fasciculatus_S2_contig731:6997..7024Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig731 6998..7024 +
1696842395.4138086-UTR-E_fasciculatus_S2_contig731:11451..123081696842395.4138086-UTR-E_fasciculatus_S2_contig731:11451..12308Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig731 11452..12308 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842395.3112473-CDS-E_fasciculatus_S2_contig731:7024..71261696842395.3112473-CDS-E_fasciculatus_S2_contig731:7024..7126Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig731 7025..7126 +
1696842395.322944-CDS-E_fasciculatus_S2_contig731:7420..75461696842395.322944-CDS-E_fasciculatus_S2_contig731:7420..7546Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig731 7421..7546 +
1696842395.3318515-CDS-E_fasciculatus_S2_contig731:7811..80631696842395.3318515-CDS-E_fasciculatus_S2_contig731:7811..8063Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig731 7812..8063 +
1696842395.3407204-CDS-E_fasciculatus_S2_contig731:8494..86201696842395.3407204-CDS-E_fasciculatus_S2_contig731:8494..8620Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig731 8495..8620 +
1696842395.353745-CDS-E_fasciculatus_S2_contig731:8903..90291696842395.353745-CDS-E_fasciculatus_S2_contig731:8903..9029Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig731 8904..9029 +
1696842395.363176-CDS-E_fasciculatus_S2_contig731:9189..93121696842395.363176-CDS-E_fasciculatus_S2_contig731:9189..9312Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig731 9190..9312 +
1696842395.3726077-CDS-E_fasciculatus_S2_contig731:10203..103291696842395.3726077-CDS-E_fasciculatus_S2_contig731:10203..10329Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig731 10204..10329 +
1696842395.3822396-CDS-E_fasciculatus_S2_contig731:10456..105821696842395.3822396-CDS-E_fasciculatus_S2_contig731:10456..10582Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig731 10457..10582 +
1696842395.392679-CDS-E_fasciculatus_S2_contig731:10721..108471696842395.392679-CDS-E_fasciculatus_S2_contig731:10721..10847Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig731 10722..10847 +
1696842395.402808-CDS-E_fasciculatus_S2_contig731:11304..114511696842395.402808-CDS-E_fasciculatus_S2_contig731:11304..11451Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig731 11305..11451 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig731.15502.1

>prot_E_fasciculatus_S2_contig731.15502.1 ID=prot_E_fasciculatus_S2_contig731.15502.1|Name=mRNA_E_fasciculatus_S2_contig731.15502.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=460bp
MKRKGLAIEERVLPAGHPRIAQSLNNLAGLLESKGKYGEAERLHLRAVAI
GETSLGPEHSDLAVFLSNLAGVLSTQGKYAEAQPLFERALAIEEAALGVD
HTRTITSRAWMADLYQEQGFFDKSSLLMEEVVRAREHVLGCDHPEVAIAL
HNRAGLLKTQAKYAEAELLCKRSLDIIEEVHGPDHSDAALVLNNWATVLE
DQGKYEEAEKLYERSRDIREKVLGPEHPDVGTSLNNLAHLLKGQGKYDAA
EALYERCQQIDKVLGPEHPDVAATLNNRAELSREQGKYAEAVSFNLRAIE
IGEKALGPKHPRLAAWLNTRAELLREQGSYDEAGPFYERSLAIRESALGP
DHPDVAQSLNNRALLLQELGNCDEAGSLYKRSLASLKKTLGPEHPAVAKT
LNNWAALLKKQEKYTEAISLLKTALSIRMDKLGRNHPETISTQNSLEVVQ
ERSVHSRAI*
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mRNA from alignment at E_fasciculatus_S2_contig731:6998..12308+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig731.15502.1 ID=mRNA_E_fasciculatus_S2_contig731.15502.1|Name=mRNA_E_fasciculatus_S2_contig731.15502.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5311bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig731:6998..12308+ (Ectocarpus fasciculatus EfasUO2)
CAGGACAAGTTTGATGAAGCGTTAGAGATGAAGCGAAAGGGTCTAGCTAT
TGAAGAGCGCGTGCTCCCCGCAGGCCACCCGCGGATAGCTCAATCGCTCA
ACAACCTCGCGGGGTTGTTGGAAAGCAAGGTAAGCGTTTGTAGACTTTTT
CTTCCCCGAAGATTTTTTTTTCAGGCGCCCGTTGCAAGAAAGTCGTTTCA
TTCATCGTTTGGCCACACCCTTACACCAAAACACCTGCTACACAGGGCAC
GTTCATGAAAGCCAAGCCGATGTACAGGAGAACACATGAAGTACTTGAGA
AATCCGCGGGGCGGGATCCCAACTGTTTCATGCTTGTCAACATCCGGGCG
TGGTTGTTGCGCGACCGTTTCTTTGCTATTCTGCCCTAGAGCACACCCCT
CCGGTTGTTCCCTTGCGTTTTAGGGCAAGTACGGCGAGGCGGAACGGTTG
CACTTGAGAGCTGTCGCTATTGGAGAGACATCACTGGGTCCAGAACATTC
AGATCTTGCCGTGTTCCTCAGCAACTTGGCGGGGGTGTTAAGCACGCAGG
TGAGATCTTGCCTACGCAGGTTCATTGCCAGTCCTAGTTGATATTTGCTC
TGCAAGCTGCAAGCTGCAAGATGCTTTGATGTCTTTCGAGGTACGTCTAA
GACGTGCCGCAGGTTGTGTAGCACTTTGTAGATTTCTTGAAGCTTGTTGC
ACCCGTGAAAACATGTCGCGGCCGGGAACGCTGTGGTACATCTCTCATCA
TGGTTGTGTGATAGACGGGGTAGACGAGAGAATGTGAAAACTAATGGTCG
AATGCTTGTTGCAGGGAAAGTACGCCGAGGCGCAGCCGTTGTTTGAGAGA
GCCCTGGCAATCGAAGAAGCCGCTCTGGGGGTGGACCACACGAGGACGAT
CACGTCTCGCGCTTGGATGGCAGACTTGTATCAGGAGCAAGGGTTCTTCG
ACAAATCTTCTCTTCTCATGGAGGAGGTTGTCAGGGCTCGTGAGCATGTT
CTAGGATGTGACCACCCAGAGGTCGCAATAGCGCTCCACAACCGGGCGGG
TTTGTTGAAAACGCAGGTAAGAGCTGTCCGAATTTTCCATGAATATTGTG
TGATCATGAAAGTTGCACGGCACCACCACCGAATGGGCGGGGTTGTTGCA
GGCGCAGGTCGGTGAGAGCCAACATTTTTCATGAGATTTTTCGTGGTTCA
TGGTGGCGCGCTCAACATCTCAGCCGGATGAGGAGTCAGGTGGTAGGTCG
AGTGTTAATCGCAGAATCTTCTTAGGGTCAACATCTCTCGGTGAGTGAAG
GCTTTTTAAGTGTACCGTCACCAACCAATGTCTTTGTTCGTAAGGGCGCT
TGTCATATGTTGAAGCCGAGCCGCTTTCTGAGGAGTCACTGGCCGTGCGA
GAGAAGACGCCGAGTTTTTGAGGAAAATTTCCTCCGCAACTGTAGATGCG
TTTTTTTGCTGAAATACGACTCTGCCGTACTGTCGACAAAATTCCAGGCC
AAGTACGCCGAGGCCGAGCTGCTGTGCAAGCGTTCGCTGGATATCATCGA
GGAAGTTCACGGCCCTGATCACTCGGATGCCGCTTTAGTCCTCAACAACT
GGGCGACAGTGTTGGAGGATCAGGTGAGAGCCGCCAGATGATTCCTGGGC
AAACCTGACGGCATCATTTTTACTGGCAAAGAGGGTTTTTGCTTCATCGG
TTGGCCTCGCGCTTCATAGCCGCTCAATTACACGGCTAACTCTCGGAAGA
TGAACCGTTGTACAAGAAAAAACAGAGATTAAGTCCTTGTCGCGGGATCA
TCCGAACGTCGCCACAATGGTCGACTGGACGGGGTGGTTGGGCCGTTGGT
CTTGTGCACGTGTCGTTTCAAAGCATTCGTTTCGTAAACGATTCCTCACG
ATTTAGGGCAAGTATGAGGAGGCCGAGAAGCTGTATGAACGTTCCCGGGA
CATTCGTGAGAAGGTCCTAGGCCCTGAGCACCCGGACGTGGGGACGTCGC
TCAACAACCTGGCGCACTTGTTAAAGGGTCAGGTGAGAGACGTACAAAAG
AAACCCACGACATTTCTGGAGCAGGGCGCCCTGCGGAAGTTGAGTGCGCT
CAACACCGGGGAAGAGAAGCGGCATTTCTCCGCAGCTCTAGAGCCGACTG
TCGCTTGTCGTTGGCTCTGCCACGCTGCCCACTGCATTCCAGGGGAAGTA
CGACGCGGCCGAGGCGCTCTATGAGCGGTGCCAGCAGATCGACAAGGTTC
TCGGCCCTGAACACCCAGATGTGGCCGCAACGCTCAACAACCGGGCGGAG
TTGTCGAGAGAGCAGGTAAAACCCGACGGAATTTTTCCGCGAAGTTTTAT
TGGAACCCTGTGGTAGTACTAAACAAACTAGGCGGACTTGTTGAGAGACC
GGTTACTGGAACCCTGTGGTAGTACTAAACAAACCGGGCGGACTTGCTGA
GAGACCGGTTATTGGAACCCTGTGGTGATACTAAACAAACTAGGCGGACT
TGTTGAGAGACCGGTTCCGCCGTGGTTCTTTCCTCTACTACGTCCCGGGT
AAATACACGGAGGCCGGGCCATTAACTATGAGCAGTGTCAGGTGATACGA
GAGGAGAAGGCTCTAGGCTCTGAGCACCCAAGTTTAGCCACAAAACTCAA
TGCCCGGGCTAGGTCATCAAGAAGTAATCCCCCATGTCCTCTGTCGACTT
TGCCCGAAAGTTTACATGTAGACGATTTACCCCTTTTGGGCAAATAGGTT
TCAAGGTGTGAGGCGGGTCTTGTCGTTGTGCTGACCTTGACAACGTCAAA
AATGCCCCAACATCGTTCAAGGTACAAATCACCTTCTACCATTGTAACGT
GGCGATTCCTAGACCCTGATTGCGGTACGTATCGCGTTGAGGTTACATCG
CCCATGGTTCCAACAACTTCAAGGAAGTGCAGGTTGCCAGCGTATCGAAA
CGGCACTTCCAAGCGAAGTTGTCAGCACGGCAAACCCCCATACGTAGTCC
AAAGGTCTATGTACACCAACTTTGTCCATGCCAATCTCTGTAGGGTATGC
ACGCTCAATTTGAAACCGTTCAACCGGAGGCCGATTTACGCATGACGCCA
GGGAAGTTGAAATTCCCACTGCTCTTGACATTGGCCAGCCCGTTCCCAAC
GAGGTGCAATCGTCCGCGTGACATGACTCTGCCGCGCCATCAACTTCCGC
TTCCAGGGCAAATACGCCGAGGCTGTCTCCTTCAACCTTCGCGCCATTGA
GATCGGGGAGAAAGCATTGGGCCCCAAGCACCCAAGGCTTGCCGCATGGC
TCAACACTCGGGCGGAGTTGCTGAGAGAGCAAGTGAGACTCGATACAAAC
CATTTCGTGGCAATGTACCCGATAGAGATTCCACGCGGTTGTTGAAATGT
TTTTCCCCCTCGCCTTTTGTCTTGACCACGTTCCTTTCACTCTTTTCACG
CCGTTCCAGGGCAGCTACGATGAAGCCGGGCCGTTCTATGAGCGTTCCCT
TGCAATCCGAGAAAGCGCACTCGGGCCTGATCACCCTGACGTGGCTCAGT
CTCTCAACAACCGGGCGCTGCTGTTGCAGGAGCTGGTGAGATCCGTCTGA
ATTGTATGCCCGGAAAATGCATGTTGTGCTCAACCAACGGCCATACGGTT
GACAGTTGTTGAGAAGCCTCCTCCGCAGGTTTTGTCTTGACCACAATTCG
TTCACGCGATTCAACACACTCCAGGGCAACTGCGATGAAGCCGGAAGCTT
GTACAAGCGTTCCCTTGCCAGCCTGAAAAAAACACTGGGGCCTGAGCACC
CTGCTGTGGCGAAAACGCTCAACAACTGGGCGGCCTTGTTGAAGAAACAG
GTGACAGCCTCACAAGTGTCAGATTAAGTCTGGTGGTTCGATGTTGACGC
TTTGTTGCTACAAAAATCGGTGTTGTTTTTTCCCGCACCGGAGGGAGCCG
TCAGATTATTCTGGGGCCATTCTAGTGGACCACCAATAAACACAGAGTAC
TGCGCAACTACAAACCACCTTATTCTTGTGGTGGTCCGACTTCTGCATGG
CTCGGATGGGAGTCGAGGATGTCTTGCTTTTTGTGCGGTAGAGTCTGTTA
CATGGTCAATTTCAAATTTCAAGTAGTAGGTGACAAAAATTGCTGTTTGA
AACACACAAACCTAATATATATATGCCCACTCTCAATCCTTTCAATCAGC
ACAATCAAGAGTCAACGCACCGCTGTCTTCTTTTGACAATTTAATAACAA
TCAGCCTGTCCGCGTCGTGGAAATATATTTCGCAAGCTTGCACCCTCACG
TCCGCAGGAGAAGTACACGGAAGCAATTTCACTGTTGAAGACGGCCCTCT
CGATCCGGATGGACAAGCTTGGGAGAAACCACCCGGAGACGATCAGCACT
CAAAACAGCCTGGAAGTTGTGCAAGAAAGGTCCGTGCACAGTCGGGCCAT
TTAGTGCTAAGAGGTGTATGCATGTAAACCTCAGTCGGGTTCATGATTAT
TCATTTACCCCATGGCGTCGTCGGCAGGATAGGAGGCGAGCGTCATGCAC
AACGCATTGCGCGAAGGTGTGGCGTTTCTTTGATGTTTGCCTTGTACTGT
GGAGACAAGACCGAAGAGCCGCCTGCGATTACGGAGACATGACAAAGACA
AAGTCGTGGTCAGACAGAACTCTCCGTGGTTGGTCTAGATCCGTCGAAAT
TGTGCTGTTGCCGACTTACGACGATCGGTCGATGCTTTTTTGGCTCCTGG
CTGTACTGTGTATTCGGACGAAGAATTATCTGAGTGCTGAGGACTCATTT
TGGAAGTATATGTGCAGTGGATCGCGGTCAGTTTAGAACATAGAACAAAT
AATATCGGGCTCTCCTCGACGATGTTCGAGTCGATTGAGAAAGAAGCGAT
CGACAGTGTGCCAGGATTTGGGTGGCCTGAAAGCTTCCCCCTCGAGATTT
GCGGTGAATTGCTGGAGTGTCCGATATAGATGGCCGTGTATACCATAACA
ACGACGGCGCTTCCAAGGCGAAGAGATGAATGCACTCTGTGAAACATCCC
AGTTTACGCTCTTCGCTTCTGAATTCGCCGAAAACTCCATCCTGTTGTGT
GTTATTCGCGTAGCTCAGTCTCATTCCCCAATTGGAACGATTTCGGGTAT
TTTAAAGAAAAAATACAAGTACTAGCACCGAAAGACTACCCGTTCGAGAT
AAAAGCTACAGCAGTCGAAGGGGATGTGTTGAAGTCTTTACACTTTACAA
TGAATGGGTTTTTGCCTCGAGTCTGAAGTTGTGGGTAGTTCTCTTTGCAA
CCGAAATCCGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig731:6998..12308+

>mRNA_E_fasciculatus_S2_contig731.15502.1 ID=mRNA_E_fasciculatus_S2_contig731.15502.1|Name=mRNA_E_fasciculatus_S2_contig731.15502.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1380bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig731:6998..12308+ (Ectocarpus fasciculatus EfasUO2)
ATGAAGCGAAAGGGTCTAGCTATTGAAGAGCGCGTGCTCCCCGCAGGCCA
CCCGCGGATAGCTCAATCGCTCAACAACCTCGCGGGGTTGTTGGAAAGCA
AGGGCAAGTACGGCGAGGCGGAACGGTTGCACTTGAGAGCTGTCGCTATT
GGAGAGACATCACTGGGTCCAGAACATTCAGATCTTGCCGTGTTCCTCAG
CAACTTGGCGGGGGTGTTAAGCACGCAGGGAAAGTACGCCGAGGCGCAGC
CGTTGTTTGAGAGAGCCCTGGCAATCGAAGAAGCCGCTCTGGGGGTGGAC
CACACGAGGACGATCACGTCTCGCGCTTGGATGGCAGACTTGTATCAGGA
GCAAGGGTTCTTCGACAAATCTTCTCTTCTCATGGAGGAGGTTGTCAGGG
CTCGTGAGCATGTTCTAGGATGTGACCACCCAGAGGTCGCAATAGCGCTC
CACAACCGGGCGGGTTTGTTGAAAACGCAGGCCAAGTACGCCGAGGCCGA
GCTGCTGTGCAAGCGTTCGCTGGATATCATCGAGGAAGTTCACGGCCCTG
ATCACTCGGATGCCGCTTTAGTCCTCAACAACTGGGCGACAGTGTTGGAG
GATCAGGGCAAGTATGAGGAGGCCGAGAAGCTGTATGAACGTTCCCGGGA
CATTCGTGAGAAGGTCCTAGGCCCTGAGCACCCGGACGTGGGGACGTCGC
TCAACAACCTGGCGCACTTGTTAAAGGGTCAGGGGAAGTACGACGCGGCC
GAGGCGCTCTATGAGCGGTGCCAGCAGATCGACAAGGTTCTCGGCCCTGA
ACACCCAGATGTGGCCGCAACGCTCAACAACCGGGCGGAGTTGTCGAGAG
AGCAGGGCAAATACGCCGAGGCTGTCTCCTTCAACCTTCGCGCCATTGAG
ATCGGGGAGAAAGCATTGGGCCCCAAGCACCCAAGGCTTGCCGCATGGCT
CAACACTCGGGCGGAGTTGCTGAGAGAGCAAGGCAGCTACGATGAAGCCG
GGCCGTTCTATGAGCGTTCCCTTGCAATCCGAGAAAGCGCACTCGGGCCT
GATCACCCTGACGTGGCTCAGTCTCTCAACAACCGGGCGCTGCTGTTGCA
GGAGCTGGGCAACTGCGATGAAGCCGGAAGCTTGTACAAGCGTTCCCTTG
CCAGCCTGAAAAAAACACTGGGGCCTGAGCACCCTGCTGTGGCGAAAACG
CTCAACAACTGGGCGGCCTTGTTGAAGAAACAGGAGAAGTACACGGAAGC
AATTTCACTGTTGAAGACGGCCCTCTCGATCCGGATGGACAAGCTTGGGA
GAAACCACCCGGAGACGATCAGCACTCAAAACAGCCTGGAAGTTGTGCAA
GAAAGGTCCGTGCACAGTCGGGCCATTTAG
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