mRNA_E_fasciculatus_S2_contig7245.15437.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7245.15437.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ09_ECTSI) HSP 1 Score: 256 bits (654), Expect = 7.720e-80 Identity = 137/143 (95.80%), Postives = 140/143 (97.90%), Query Frame = 2
Query: 158 MVRFKHRYLVATIAAASQERIAELGPSEILAMLRESIEANFGDFGSGSTSQSLQVRSFDRASGVCVIRTGRESYRMVRASLTLLSGTKDGRLSVTVQAVAGCDRTLKAAAVEAYTRGYRRAGISDDAAAALLQRQRQLLEAWQ 586
MVRFKHRYLVATIAAASQERIAELGPSEILAMLRESIEANFGDFGSGSTSQSLQVRSFDR SGVCVIR GRES+RMVRASLTLLSGTKD RLSVTV+AVAGCDRTLKAAAVEAYTRGYRRAGISDDAAAALLQRQRQLL+AWQ
Sbjct: 1 MVRFKHRYLVATIAAASQERIAELGPSEILAMLRESIEANFGDFGSGSTSQSLQVRSFDRTSGVCVIRAGRESHRMVRASLTLLSGTKDARLSVTVKAVAGCDRTLKAAAVEAYTRGYRRAGISDDAAAALLQRQRQLLDAWQ 143
BLAST of mRNA_E_fasciculatus_S2_contig7245.15437.1 vs.
Match: Ribonuclease (P/MRP protein subunit POP5 n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XRS2_9CHLO) HSP 1 Score: 66.2 bits (160), Expect = 2.440e-9 Identity = 36/95 (37.89%), Postives = 55/95 (57.89%), Query Frame = 2
Query: 158 MVRFKHRYLVATIAAASQERIAELGPSEILAMLRESIEANFGDFGSGSTSQSLQVRSFDRASGVCVIRTGRESYRMVRASLTLLSGTKDGRLSVT 442
M RFK+RY + + + R L S +L +R+S++ NFGD G+ SLQV+ ASG+C+IR GR+ + + +L+L+S K RL T
Sbjct: 1 MARFKNRYFLYLLTWRNGNRDDTLSESLLLQCIRDSVQTNFGDTVLGAILASLQVKFLCLASGLCIIRCGRDESQQITGALSLISEVKQNRLFFT 95
BLAST of mRNA_E_fasciculatus_S2_contig7245.15437.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EBC8_MICCC) HSP 1 Score: 64.3 bits (155), Expect = 5.930e-9 Identity = 41/111 (36.94%), Postives = 63/111 (56.76%), Query Frame = 2
Query: 158 MVRFKHRYLVATIAAASQERIAELGPSEILAMLRESIEANFGDFGSGSTSQSLQVRSFDRASGVCVIRTGRESYRMVRASLTLLSGTKDGRLSVTVQAVAGCDRTLKAAAV 490
MVRFK+RYL+ L S IL +LR+ + NFGD G+G+ S+ V+ ++ A+G+ V+R GR+ +R V +TLL K ++V V G R+ +AAA+
Sbjct: 1 MVRFKNRYLLTEWRWHDGRVDESLTESVILGILRQCVAVNFGDIGAGAALSSVAVKYWNPATGLGVVRCGRDVHREVWCCMTLLRDVKGRSITVRVLHNGGTLRSSQAAAL 111
BLAST of mRNA_E_fasciculatus_S2_contig7245.15437.1 vs.
Match: Ribonuclease (P/MRP protein subunit POP5 n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0YRF2_9CHLO) HSP 1 Score: 63.5 bits (153), Expect = 2.380e-8 Identity = 36/101 (35.64%), Postives = 54/101 (53.47%), Query Frame = 2
Query: 158 MVRFKHRYLVATIAAASQERIAELGPSEILAMLRESIEANFGDFGSGSTSQSLQVRSFDRASGVCVIRTGRESYRMVRASLTLLSGTKDGRLSVTVQAVAG 460
MVR+K+RYLV + + LG + I L++S+ NFGD+G G SQSLQVR F+ + V ++R ++TLL K R S ++ +G
Sbjct: 1 MVRYKNRYLVVELLWKDGKFDYSLGETPISQALKDSVSLNFGDYGQGLMSQSLQVRYFNPFTNVAIVRCTEACKNQAAVAVTLLDEVKSRRCSTVLRYTSG 101
BLAST of mRNA_E_fasciculatus_S2_contig7245.15437.1 vs.
Match: Ribonuclease (P/MRP protein subunit POP5 n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507CR57_9FUNG) HSP 1 Score: 62.8 bits (151), Expect = 4.510e-8 Identity = 42/138 (30.43%), Postives = 76/138 (55.07%), Query Frame = 2
Query: 161 VRFKHRYLVATIAAASQERIAE-LGPSEILAMLRESIEANFGDFGSGSTSQSLQVRSFDRASGVCVIRTGRESYRMVRASLTLLSGTKDGRLSVTVQAVAGCDRTLKAAAVE---AYTRGYRRAGISDDAAAALLQRQ 562
+RFK+RYL+ +A A + + E L I A++R+S++ NFGD+G G ++ ++ F +G+ ++R R+ Y++ A+LTL++ K + V + G + + +E A R +RA I DD A L+ +
Sbjct: 1 MRFKNRYLLFELAYADDKYVDESLHAGIIAAIIRDSVQLNFGDYGIGILGGAIAIKYFSPHTGIGILRAPRDHYQLAWAALTLVTQVKKKSAMLRVLHLGGTIKQCQLVTIEYDQAKLRTLKRAKILDDTRAEELRHK 138
BLAST of mRNA_E_fasciculatus_S2_contig7245.15437.1 vs.
Match: Ribonuclease (P/MRP protein subunit POP5 n=1 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NBJ4_SAICN) HSP 1 Score: 59.7 bits (143), Expect = 5.320e-7 Identity = 38/102 (37.25%), Postives = 59/102 (57.84%), Query Frame = 2
Query: 221 AELGPSEILAMLRESIEANFGDFGSGSTSQSLQVRSFDRASGVCVIRTGRESYRMVRASLTLLSGTKDGRLSVTVQAVAGCDRTLKAAAVEAYTRGYRRAGI 526
A+L P + ++RE I+ANFGD+GSG + +L V+ F A+ ++R R+ +R+ A+LT L+ + V V+G T+K A +E RG RAGI
Sbjct: 42 AKLTPQALAHLIREQIQANFGDWGSGVVAATLNVKYFSHATSTGILRVTRQHFRLAWAALTFLTEILGRGCVIKVVRVSG---TIKKAEMEVIKRG--RAGI 138
BLAST of mRNA_E_fasciculatus_S2_contig7245.15437.1 vs.
Match: Ribonuclease (P/MRP protein subunit POP5 n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397J564_9GLOM) HSP 1 Score: 58.5 bits (140), Expect = 1.580e-6 Identity = 35/115 (30.43%), Postives = 63/115 (54.78%), Query Frame = 2
Query: 158 MVRFKHRYLVATIA---AASQERIAELGPSEILAMLRESIEANFGDFGSGSTSQSLQVRSFDRASGVCVIRTGRESYRMVRASLTLLSGTKDGRLSVTVQAVAGCDRTLKAAAVE 493
MVR K+R+L+ I ++ EL +I + +++S++ NFGD+GSG + SL V+ F + + +IR RE Y +V ++LT ++ + V + G + + AA+E
Sbjct: 1 MVRLKNRWLLFEIIYEDTIQNKKYEELTSRDINSAIKDSVQQNFGDYGSGCIAASLSVKYFSPYTNIGIIRVSREHYNLVWSALTFITQVQSRFCLFRVLHLGGTIKQCQKAAIE 115
BLAST of mRNA_E_fasciculatus_S2_contig7245.15437.1 vs.
Match: Ribonuclease (P/MRP protein subunit POP5 n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397USF1_9GLOM) HSP 1 Score: 57.0 bits (136), Expect = 3.170e-6 Identity = 34/116 (29.31%), Postives = 61/116 (52.59%), Query Frame = 2
Query: 158 MVRFKHRYLV-ATIAAASQERIAELGP---SEILAMLRESIEANFGDFGSGSTSQSLQVRSFDRASGVCVIRTGRESYRMVRASLTLLSGTKDGRLSVTVQAVAGCDRTLKAAAVE 493
MVR KHR+++ T+ + + + P +I ++ESI+ NFGD+G G TS SL V+ + + + ++R R+ YRM +LT ++ ++ V V G + + +E
Sbjct: 1 MVRLKHRWILFETLFENTSHQDTSIDPLTSHDIYITVKESIQLNFGDYGRGCTSSSLNVKYYSPHTNIGLLRVSRDYYRMAWCALTFITQINSRSCTIRVLHVGGTIKQCQKLVIE 116
BLAST of mRNA_E_fasciculatus_S2_contig7245.15437.1 vs.
Match: Putative (ribonuclease p mrp protein subunit pop5 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSB7_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 1.710e-5 Identity = 36/103 (34.95%), Postives = 59/103 (57.28%), Query Frame = 2
Query: 239 EILAMLRESIEANFGDFGSGSTSQSLQVRSFDRASGVCVIRTGRESYRMVRASLTLL--------SGTKDGRLSVTVQA------VAGCDRTLKAAAVEAYTR 505
+IL ++ES+++NFG+FG+ S+QVR +D A+ + ++R R+S+R V A++TL+ SG GR S ++A V+G RT + AV R
Sbjct: 30 DILRAIKESVQSNFGNFGAAPLLLSMQVRYYDEATQIFILRCPRDSFRSVWAAMTLVTSLGGSITSGNSGGRDSSAIKANISVLRVSGSVRTCRLDAVSILVR 132
BLAST of mRNA_E_fasciculatus_S2_contig7245.15437.1 vs.
Match: Ribonuclease (P/MRP protein subunit POP5 n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IYH0_PLABS) HSP 1 Score: 54.7 bits (130), Expect = 2.510e-5 Identity = 30/85 (35.29%), Postives = 48/85 (56.47%), Query Frame = 2
Query: 158 MVRFKHRYLVATIAAASQERIAELGPSEILAMLRESIEANFGDFGSGSTSQSLQVRSFDRASGVCVIRTGRESYRMVRASLTLLS 412
MVRFK+RYL+ + A L + + +++ I FG+FG + + QV+ F+ A+ V +IR R +RMV +LTLL+
Sbjct: 1 MVRFKNRYLLVELIWADGRTDRSLSATMLQRTVKKVIADGFGEFGLAACQHATQVKYFNNATNVAIIRCPRSHHRMVWVALTLLT 85 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7245.15437.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7245.15437.1 >prot_E_fasciculatus_S2_contig7245.15437.1 ID=prot_E_fasciculatus_S2_contig7245.15437.1|Name=mRNA_E_fasciculatus_S2_contig7245.15437.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=144bp MVRFKHRYLVATIAAASQERIAELGPSEILAMLRESIEANFGDFGSGSTSback to top mRNA from alignment at E_fasciculatus_S2_contig7245:3746..7127- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7245.15437.1 ID=mRNA_E_fasciculatus_S2_contig7245.15437.1|Name=mRNA_E_fasciculatus_S2_contig7245.15437.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3382bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7245:3746..7127- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7245:3746..7127- >mRNA_E_fasciculatus_S2_contig7245.15437.1 ID=mRNA_E_fasciculatus_S2_contig7245.15437.1|Name=mRNA_E_fasciculatus_S2_contig7245.15437.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=432bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7245:3746..7127- (Ectocarpus fasciculatus EfasUO2)back to top |