mRNA_E_fasciculatus_S2_contig7245.15436.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7245.15436.1
Unique NamemRNA_E_fasciculatus_S2_contig7245.15436.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7245.15436.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ08_ECTSI)

HSP 1 Score: 631 bits (1628), Expect = 2.370e-215
Identity = 378/557 (67.86%), Postives = 417/557 (74.87%), Query Frame = 1 
Query:    1 APPCAQKLPTEPLSQFLTPRRGGNRITYGQGSPGEEDGETYEYQNPRKGKSAAVGPPRAKEKAATAXXXXXXXXXXXXXXXXXXTGKEKRQRGAGSAAIAAVPTPVARLLPGAVPSRREGEEKRSQEHDRG------ADGEEEKKSDNYGCGGIAAEMPPLSVAAGGENDGKELYQKLDAQTPGAHYGVGGXXXXXXXXIFATSRSSPTPTGAASRLDPTQFLTDTSSVKATAASRNFPHGGGGSFQLPQSPITPELPGGSDNGNAEKPPRLEGQTKILTSPMSVDMPTARGEQEQSLSPSA-------CRLTQQTPVASPRGGLPPTYQEHTGAVGSAAAIGSPASAGHSASGDPSVGDPTGLVASLANTLLAHANAEDNA-PTNHQEKEEGAGN---NDPSPRPGGFLKRLMTQTPPGGVSPARPER-TLQRKPSGSAAYPRSGSDLSPVLSASGTLFQVADFPEEEEEE--------SRSPSPAVEPAAKSLPQMELSTAGEGSRMFLGQTPITPSNVDAKRLYDSTVSTDTVPTTAAGVPDG----EEKTSDT 1581
            +P   + +PTEPLSQFLTP+RGGNRITYG  S GE+DGETYEYQNPRK  ++A    RA +                          +KRQ GAG+AAIAAVPT  ARLLPGA PSRR GEEKRSQE +        ADGEEEKK +N+GCGGI A+M P+S AAG ENDG E YQKL AQTP AHYG   XXXXXXX +FATSR+SPTPTGAASRLDPT+FLT+TSSV+ATAASR FPHGGGGSFQ+PQSPITPELPGG+D+GNAEKPPRLEGQT ILTSPMS D+PT+ G +++++ PS+       C L+QQTPVASPRGGLPPTYQEHT AVG+AA  G PASAGHSA GD SVGDPTGLVASLAN LLA ANA D A PTN  E +        NDPS  P GFLK LMTQTPPGG SPARPER TLQR+PSGSAAYPRSGSDLSPVLSA GTLFQ ADFPEE            + S  P VEPAAKSLPQ+E+ST GEGSRMFL QTPIT SN D  RLY+S VSTDTVP TAAG PDG    EEKTSDT
Sbjct:  349 SPMAVENIPTEPLSQFLTPKRGGNRITYGPDSGGEDDGETYEYQNPRKATASAPEGSRAAQ--------------------------DKRQHGAGAAAIAAVPTLAARLLPGAAPSRRHGEEKRSQERNHSYDSSGSADGEEEKKRENHGCGGIMADMTPVSAAAGDENDGSEFYQKLGAQTPAAHYGX--XXXXXXXDLFATSRTSPTPTGAASRLDPTRFLTNTSSVQATAASRYFPHGGGGSFQVPQSPITPELPGGNDSGNAEKPPRLEGQTNILTSPMSADVPTSIGGEKRTVVPSSSGLSSNPCLLSQQTPVASPRGGLPPTYQEHTDAVGNAAHSGRPASAGHSAGGDSSVGDPTGLVASLANALLARANAGDGASPTNDSENQXXXXXXXXNDPSSTPAGFLKGLMTQTPPGGASPARPERRTLQRRPSGSAAYPRSGSDLSPVLSARGTLFQAADFPEEXXXXXXXXXXXXTLSQLPVVEPAAKSLPQVEMSTPGEGSRMFLAQTPITLSNADVTRLYESNVSTDTVPITAAGAPDGGAGGEEKTSDT 877
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BLAST of mRNA_E_fasciculatus_S2_contig7245.15436.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEQ5_9PHAE)

HSP 1 Score: 572 bits (1474), Expect = 2.120e-194
Identity = 375/550 (68.18%), Postives = 407/550 (74.00%), Query Frame = 1 
Query:   37 LSQFLTPRRGGNRITYGQGSPGEEDGETYEYQNPRKGKSAAVGPPRAKEKAATAXXXXXXXXXXXXXXXXXXTGKEKRQRGAGSAAIAAVPTP-----------VARLLPGAVPSRREGEEKRSQEHDRG------ADGEEEKKSDNYGCGGIAAEMPPLSVAAGGENDGKELYQKLDAQTPGAHYGVGGXXXXXXXXIFATSRSSPTPTGAASRLDPTQFLTDTSSVKATAASRNFPHGGGGSFQLPQSPITPELPGGSDNGNAEKPPRLEGQTKILTSPMSVDMPTARGEQEQSLSPSA-------CRLTQQTPVASPRGGLPPTYQEHTGAVGSAAAIGSPASAGHSASGDPSVGDPTGLVASLANTLLAHANAEDNA-PTN---HQEKEEGAGNNDPSPRPGGFLKRLMTQTPPGGVSPARPER-TLQRKPSGSAAYPRSGSDLSPVLSASGTLFQVADFPEEEEEESRSPSPAVEPAAKSLPQMELSTAGEGSRMFLGQTPITPSNVDAKRLYDSTVSTDTVPTTAA---GVPDG----EEKTSD 1578
            +  FLTPRRGGNRITYG  S G +DGETY YQNPRKGKSAAVGPPRAK      XXXXXXXXXXXXXXXXXX                                VARLLPGA PSRR GEEKRS E +        ADGEEEKK D++GCGGI A+M P+S  AG ENDG + YQKL AQTP A YG    XXXXXXXIFATSR+SPTPTGAA  LDPT+FL  TS V+ATAASR FPHG GGSFQ+PQSP TPELPGG+DNGNAEK  RL+GQT ILTSP   D+PT+ G +E+++ PS+       C L+QQTPVASPRGGLPPTYQEHT AVG+AA  GSPAS GHSASGD SVGD TGLVASLAN LLA ANA D A PTN   +Q++EE AG NDPS  P   LK LMTQTPPGGVSPARPER TLQR+PSGSAAYPRSGSDLSPV  A GTLFQVADFPEEEEEE+ SP P VE  AKSLPQ+E+STA EGSRM LGQTPIT SN DA RLY+S +STDTVP TAA   G PDG    EEKTSD
Sbjct:  107 VENFLTPRRGGNRITYGPDSDGGDDGETYAYQNPRKGKSAAVGPPRAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVARLLPGAAPSRRHGEEKRSHERNHSYDSSSSADGEEEKKRDDHGCGGIMADMRPVSAGAGDENDGSDFYQKLGAQTPAAQYG---GXXXXXXXIFATSRTSPTPTGAAPPLDPTRFLAGTSLVQATAASRYFPHGDGGSFQVPQSPKTPELPGGNDNGNAEKSLRLDGQTNILTSPKPADVPTSSGVEERTVVPSSSGLTSNPCLLSQQTPVASPRGGLPPTYQEHTDAVGNAARSGSPASEGHSASGDSSVGDTTGLVASLANALLARANAGDGASPTNGSENQQQEEEAGKNDPSSTPAVLLKGLMTQTPPGGVSPARPERKTLQRQPSGSAAYPRSGSDLSPVPFARGTLFQVADFPEEEEEETPSPLPVVEATAKSLPQVEMSTAVEGSRMLLGQTPITLSNADATRLYESNISTDTVPITAAEAAGAPDGGAGDEEKTSD 653
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7245.15436.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.370e-21567.86protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.120e-19468.18protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7245contigE_fasciculatus_S2_contig7245:432..2502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score643.3
Seed ortholog evalue1e-181
Seed eggNOG ortholog2880.D8LQ08
Model size1584
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2EQYQ@1,2STVK@2759
Cds size1584
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842388.716404-CDS-E_fasciculatus_S2_contig7245:431..7991696842388.716404-CDS-E_fasciculatus_S2_contig7245:431..799Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7245 432..799 +
1696842388.7291203-CDS-E_fasciculatus_S2_contig7245:1286..25021696842388.7291203-CDS-E_fasciculatus_S2_contig7245:1286..2502Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7245 1287..2502 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7245.15436.1prot_E_fasciculatus_S2_contig7245.15436.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7245 432..2502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7245.15436.1

>prot_E_fasciculatus_S2_contig7245.15436.1 ID=prot_E_fasciculatus_S2_contig7245.15436.1|Name=mRNA_E_fasciculatus_S2_contig7245.15436.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=528bp
APPCAQKLPTEPLSQFLTPRRGGNRITYGQGSPGEEDGETYEYQNPRKGK
SAAVGPPRAKEKAATAAAAAAAATAATAAVAAIATGKEKRQRGAGSAAIA
AVPTPVARLLPGAVPSRREGEEKRSQEHDRGADGEEEKKSDNYGCGGIAA
EMPPLSVAAGGENDGKELYQKLDAQTPGAHYGVGGGGGGGGGGIFATSRS
SPTPTGAASRLDPTQFLTDTSSVKATAASRNFPHGGGGSFQLPQSPITPE
LPGGSDNGNAEKPPRLEGQTKILTSPMSVDMPTARGEQEQSLSPSACRLT
QQTPVASPRGGLPPTYQEHTGAVGSAAAIGSPASAGHSASGDPSVGDPTG
LVASLANTLLAHANAEDNAPTNHQEKEEGAGNNDPSPRPGGFLKRLMTQT
PPGGVSPARPERTLQRKPSGSAAYPRSGSDLSPVLSASGTLFQVADFPEE
EEEESRSPSPAVEPAAKSLPQMELSTAGEGSRMFLGQTPITPSNVDAKRL
YDSTVSTDTVPTTAAGVPDGEEKTSDTS
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mRNA from alignment at E_fasciculatus_S2_contig7245:432..2502+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7245.15436.1 ID=mRNA_E_fasciculatus_S2_contig7245.15436.1|Name=mRNA_E_fasciculatus_S2_contig7245.15436.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2071bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7245:432..2502+ (Ectocarpus fasciculatus EfasUO2)
GCCCCTCCCTGTGCCCAAAAGTTACCGACTGAGCCGCTGAGCCAGTTTTT
GACCCCCAGACGCGGCGGAAACAGGATAACGTACGGTCAAGGCTCTCCTG
GCGAGGAAGATGGCGAGACGTACGAGTACCAGAACCCCAGAAAAGGCAAG
TCCGCCGCGGTGGGACCGCCGAGGGCCAAGGAGAAGGCGGCCACCGCTGC
CGCCGCCGCTGCCGCCGCCACCGCCGCCACCGCCGCCGTTGCAGCAATAG
CAACGGGGAAGGAGAAACGGCAGCGCGGAGCCGGGTCCGCGGCCATCGCC
GCTGTGCCCACCCCCGTTGCCAGGCTCCTCCCGGGAGCCGTCCCGTCAAG
ACGCGAGGGAGAAGAGAAGTGAGTAGAGGCCTGGGTGGAGGGGACGATGG
AAAAAATCTGGGGCCTCCCGCTTGATTTTGAATGGTAACCTGTATATATG
GATATTTCGCGCGGGGTTACATGTTTGTAATATGGAGTGTGAGGGGTGTC
GGGTTTGGTGCCTGGGCGTGGATGAAATATCCTCAGCCTCCCACGAAGCC
CATCGCCGCCCTTGGATACGGAAAAATGATTCCATTTGGGACGTCTAGCA
AGGCCGTGCCTTCGGCAACAAGTACATCGACTGTTTGCAGCGCTTTGGGA
AGCTACCGTTCCAAATTTTTTGGGCCCTACTCACTTCCAAAAGTTTGGAA
ACATTTCCATAGTTTTCGATGACTCCCAATACTTTGGAAGTTCCAAATTT
GGCACGATCAGCCATATCTTAAGGCGGCCCTTACCGGCTTCAGAACTTCT
TTTTCGCCAGTCACGAAGCCGAAAACGGCCGTTGCTGCCAACGCACTGTG
CGCAGGAGGAGCCAAGAACACGACCGCGGCGCCGATGGCGAAGAGGAAAA
GAAGAGCGACAACTACGGATGCGGAGGAATCGCGGCAGAAATGCCGCCGT
TGTCTGTTGCAGCAGGTGGTGAAAACGATGGCAAAGAGCTTTACCAGAAA
TTGGATGCCCAGACCCCTGGCGCACACTACGGAGTCGGCGGCGGCGGCGG
TGGCGGCGGCGGCGGTATCTTTGCAACATCACGATCGTCACCAACACCGA
CAGGTGCTGCTTCCCGCCTGGACCCCACTCAGTTTCTCACCGATACTTCG
TCGGTAAAGGCAACGGCGGCATCGAGGAACTTCCCGCACGGTGGCGGCGG
CAGCTTCCAGCTGCCGCAGTCCCCGATAACGCCTGAATTGCCCGGCGGCA
GCGACAACGGAAACGCCGAGAAACCACCGCGGCTCGAGGGTCAGACCAAG
ATATTGACGTCCCCAATGTCAGTCGACATGCCCACCGCCCGCGGCGAACA
GGAGCAAAGCTTGTCCCCCAGTGCTTGCCGCTTGACCCAGCAAACCCCTG
TCGCATCGCCACGTGGCGGGTTGCCACCCACGTACCAGGAACACACAGGC
GCGGTTGGAAGCGCCGCAGCCATTGGCAGCCCGGCGTCTGCGGGGCACTC
GGCGAGCGGTGACCCGTCCGTTGGCGACCCGACGGGCCTAGTGGCGTCGC
TTGCCAACACCCTCCTCGCCCACGCCAACGCCGAGGACAACGCCCCCACC
AACCACCAGGAGAAGGAAGAGGGGGCAGGGAACAACGACCCTTCTCCTCG
TCCCGGCGGTTTCTTGAAAAGGTTGATGACACAGACGCCGCCGGGCGGGG
TTTCTCCGGCGCGCCCTGAAAGAACACTGCAACGCAAGCCAAGCGGGTCT
GCTGCTTATCCCCGGAGCGGGAGCGACCTGTCTCCTGTACTGTCCGCCAG
CGGCACTCTCTTCCAAGTGGCAGATTTCCCGGAGGAAGAGGAGGAGGAAT
CGCGGTCTCCATCGCCGGCGGTTGAGCCAGCAGCGAAATCCTTACCCCAG
ATGGAACTGAGCACGGCTGGAGAGGGGTCGCGCATGTTTTTGGGCCAGAC
TCCGATCACGCCATCGAACGTAGACGCGAAGCGGCTGTACGACTCCACGG
TTTCCACTGACACCGTGCCGACAACCGCCGCAGGAGTGCCAGACGGGGAA
GAGAAAACGTCTGACACCAGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7245:432..2502+

>mRNA_E_fasciculatus_S2_contig7245.15436.1 ID=mRNA_E_fasciculatus_S2_contig7245.15436.1|Name=mRNA_E_fasciculatus_S2_contig7245.15436.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1584bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7245:432..2502+ (Ectocarpus fasciculatus EfasUO2)
GCCCCTCCCTGTGCCCAAAAGTTACCGACTGAGCCGCTGAGCCAGTTTTT
GACCCCCAGACGCGGCGGAAACAGGATAACGTACGGTCAAGGCTCTCCTG
GCGAGGAAGATGGCGAGACGTACGAGTACCAGAACCCCAGAAAAGGCAAG
TCCGCCGCGGTGGGACCGCCGAGGGCCAAGGAGAAGGCGGCCACCGCTGC
CGCCGCCGCTGCCGCCGCCACCGCCGCCACCGCCGCCGTTGCAGCAATAG
CAACGGGGAAGGAGAAACGGCAGCGCGGAGCCGGGTCCGCGGCCATCGCC
GCTGTGCCCACCCCCGTTGCCAGGCTCCTCCCGGGAGCCGTCCCGTCAAG
ACGCGAGGGAGAAGAGAAGAGGAGCCAAGAACACGACCGCGGCGCCGATG
GCGAAGAGGAAAAGAAGAGCGACAACTACGGATGCGGAGGAATCGCGGCA
GAAATGCCGCCGTTGTCTGTTGCAGCAGGTGGTGAAAACGATGGCAAAGA
GCTTTACCAGAAATTGGATGCCCAGACCCCTGGCGCACACTACGGAGTCG
GCGGCGGCGGCGGTGGCGGCGGCGGCGGTATCTTTGCAACATCACGATCG
TCACCAACACCGACAGGTGCTGCTTCCCGCCTGGACCCCACTCAGTTTCT
CACCGATACTTCGTCGGTAAAGGCAACGGCGGCATCGAGGAACTTCCCGC
ACGGTGGCGGCGGCAGCTTCCAGCTGCCGCAGTCCCCGATAACGCCTGAA
TTGCCCGGCGGCAGCGACAACGGAAACGCCGAGAAACCACCGCGGCTCGA
GGGTCAGACCAAGATATTGACGTCCCCAATGTCAGTCGACATGCCCACCG
CCCGCGGCGAACAGGAGCAAAGCTTGTCCCCCAGTGCTTGCCGCTTGACC
CAGCAAACCCCTGTCGCATCGCCACGTGGCGGGTTGCCACCCACGTACCA
GGAACACACAGGCGCGGTTGGAAGCGCCGCAGCCATTGGCAGCCCGGCGT
CTGCGGGGCACTCGGCGAGCGGTGACCCGTCCGTTGGCGACCCGACGGGC
CTAGTGGCGTCGCTTGCCAACACCCTCCTCGCCCACGCCAACGCCGAGGA
CAACGCCCCCACCAACCACCAGGAGAAGGAAGAGGGGGCAGGGAACAACG
ACCCTTCTCCTCGTCCCGGCGGTTTCTTGAAAAGGTTGATGACACAGACG
CCGCCGGGCGGGGTTTCTCCGGCGCGCCCTGAAAGAACACTGCAACGCAA
GCCAAGCGGGTCTGCTGCTTATCCCCGGAGCGGGAGCGACCTGTCTCCTG
TACTGTCCGCCAGCGGCACTCTCTTCCAAGTGGCAGATTTCCCGGAGGAA
GAGGAGGAGGAATCGCGGTCTCCATCGCCGGCGGTTGAGCCAGCAGCGAA
ATCCTTACCCCAGATGGAACTGAGCACGGCTGGAGAGGGGTCGCGCATGT
TTTTGGGCCAGACTCCGATCACGCCATCGAACGTAGACGCGAAGCGGCTG
TACGACTCCACGGTTTCCACTGACACCGTGCCGACAACCGCCGCAGGAGT
GCCAGACGGGGAAGAGAAAACGTCTGACACCAGC
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