mRNA_E_fasciculatus_S2_contig7244.15434.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7244.15434.1
Unique NamemRNA_E_fasciculatus_S2_contig7244.15434.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7244.15434.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJD1_ECTSI)

HSP 1 Score: 279 bits (714), Expect = 1.110e-94
Identity = 138/155 (89.03%), Postives = 146/155 (94.19%), Query Frame = 1 
Query:    1 MMMASLTGSWALDVHRSDTLEAYLRCMGAPGGVIEAQLAGEQACQSRNVLVLEGSSLVVHKHTSVNNFTESYELDQERVTPTTYGEKRAIASLLQPGRHDALVIKTALPTDSCNFGLVETRRLVGDGSTHIQELLLRNLDTGAQSITRRTWVREP 465
            MMM+SLTG+W LDV+RSDTLEAYLRCMGAP  V+EAQLAGEQAC SRNVLVL+ S LVVHKHTSVNN TESYELDQERVTP+TYGEKRAIASLLQPGRHDAL IKTALPTD+ +FGLVETRRLVGDGSTHIQELLLRNLDTGAQSITRRTWVREP
Sbjct:    1 MMMSSLTGAWVLDVYRSDTLEAYLRCMGAPDRVVEAQLAGEQACPSRNVLVLDDSRLVVHKHTSVNNLTESYELDQERVTPSTYGEKRAIASLLQPGRHDALAIKTALPTDTSDFGLVETRRLVGDGSTHIQELLLRNLDTGAQSITRRTWVREP 155
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BLAST of mRNA_E_fasciculatus_S2_contig7244.15434.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LID1_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 2.000e-13
Identity = 46/133 (34.59%), Postives = 62/133 (46.62%), Query Frame = 1 
Query:  112 LAGEQACQSRNVLVLEGSSLVVHKHTSVNNFTESYELDQERVTPTTYGEK-------------RAIASLLQPGRHDALVIKT--ALPTDSCNFGLVETRRLVGDGSTHIQELLLRNLDTGAQSITRRTWVREP 465
            + GE+  QSRNV+ L  S LV+HK T++NNFTE +ELD+E+VTP     +             +   SL +  + D  V+ T  + P        VE R+L   G THIQ                R WVR P
Sbjct:   12 VTGEREYQSRNVIALHASELVIHKKTAINNFTERFELDEEQVTPARPWNRPQHGGXXXXXXVNQVTVSLGESEQLDGYVVATTTSAPNGRPTVETVEVRQLTDGGLTHIQXXXXXXXXXXXXXXXXRVWVRVP 144
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7244.15434.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.110e-9489.03protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.000e-1334.59protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7244contigE_fasciculatus_S2_contig7244:3338..6061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size468
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-14_005890.1
Cds size468
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842388.6496396-CDS-E_fasciculatus_S2_contig7244:3337..33841696842388.6496396-CDS-E_fasciculatus_S2_contig7244:3337..3384Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7244 3338..3384 +
1696842388.6600718-CDS-E_fasciculatus_S2_contig7244:4223..43881696842388.6600718-CDS-E_fasciculatus_S2_contig7244:4223..4388Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7244 4224..4388 +
1696842388.6690207-CDS-E_fasciculatus_S2_contig7244:5296..54801696842388.6690207-CDS-E_fasciculatus_S2_contig7244:5296..5480Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7244 5297..5480 +
1696842388.6780121-CDS-E_fasciculatus_S2_contig7244:5989..60611696842388.6780121-CDS-E_fasciculatus_S2_contig7244:5989..6061Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7244 5990..6061 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7244.15434.1prot_E_fasciculatus_S2_contig7244.15434.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7244 3338..6061 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7244.15434.1

>prot_E_fasciculatus_S2_contig7244.15434.1 ID=prot_E_fasciculatus_S2_contig7244.15434.1|Name=mRNA_E_fasciculatus_S2_contig7244.15434.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=156bp
MMMASLTGSWALDVHRSDTLEAYLRCMGAPGGVIEAQLAGEQACQSRNVL
VLEGSSLVVHKHTSVNNFTESYELDQERVTPTTYGEKRAIASLLQPGRHD
ALVIKTALPTDSCNFGLVETRRLVGDGSTHIQELLLRNLDTGAQSITRRT
WVREP*
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mRNA from alignment at E_fasciculatus_S2_contig7244:3338..6061+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7244.15434.1 ID=mRNA_E_fasciculatus_S2_contig7244.15434.1|Name=mRNA_E_fasciculatus_S2_contig7244.15434.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2724bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7244:3338..6061+ (Ectocarpus fasciculatus EfasUO2)
ATGATGATGGCGTCACTCACCGGTTCTTGGGCCTTGGACGTTCACAGGTG
CGCGCGCTTTCCGGTGGTACGGTTCAAGTCGGCCACTCTCTCGAGAGCGA
CGATCTGCTACGTTTGGACAATCTCTTGAAGTGTATTGTAGCACGGCAGA
AATTGCGTACATTTAATGTGAAATCGAGTAGTATACAACGCGGCGATGGC
AGCATCTACGCTTTTCGAAACACCACGCGACGATATGGAAGCCGAAATAT
TGTGCAGAATGTTACGTGAGAATCATTGCTATGTACAGTCGGTCGAGACT
ACCGTCATGTGTGTGCGTCATGGCCTTGTTGGCCAAGCTCGTGCTCTAAG
GCCAGGTTTTCGATTCCATCCACCCGCTCTCATCATGCATGAAGACGACG
GCCATGAGTGAACATTGACATTGAGTCTCCCCCCTAAACTTTAACCTTCC
GTTTCCTTATCTACCTTATGCCTCCGACGAACACGTTGTCGATTTCTTGC
GCTCCCGTATTGGTGAAACGTGGTGTATAAAACTGCGATGATGACGGCCC
CTTCAAACACACACGTGCTAGCGCTAAGATTTGGATGGAAATGAACACTG
CATGCTACGCGACCAACTTTATTAGTGGTACATACTGACGGCATCGACCT
GTTACCCCTAGAATATTGCCGTCCATTTCGTTGTAGATCGGTCTAAGAAG
GTGCCGAACGGGGTCGTCGGGGCGACAAACGAATACCTACCTTTCGGCGG
TACTACCCCCCCCCCACCAGGGAACATAGAAGCCCCCCCCCCCCGATACT
GTCTTCCAAATAACTCAGCGTCTCTGTACCCCCGTCTTGCCGATTGATTA
ATTCTGCTTGTGTCCTAAACCTATACCCGAAAAAAGATCGGACACTTTGG
AAGCGTACCTCCGGTGCATGGGGGCACCAGGCGGGGTCATTGAGGCGCAG
CTGGCCGGAGAGCAAGCCTGCCAGTCGCGCAACGTTCTCGTTCTCGAAGG
CTCCAGCCTCGTGGTGCACAAGCACACTTCGGTCAACAACTTCACCGAAT
CGTGAGTGAGAGAGAATTCGAGCGAGCAAGCAGGCTACACTGCTTGGTGT
GGTGTTTTGTTCTGCTGTGGATCGACGGTTCTACGTATGTATGCATGCTT
TTACATAGTGTTGGGGGCAACGCGCCTAGCTAAACTCATGGCTGCTGTTG
TTGTATTTTTGGTGTTTGGTTATGGTATGCTGAAGTAGTAGTGACCCCGG
CTGGTGTGTCAAGCACATCTCAGAAAGGTGTGGACTATAGCGCCAGCGTT
GATGGAACAAACACACACAGCAGTGATCCGCAGGTTGGACGTTTTTCAGC
CCGACGGCTCTCGTGTTGAGATCGCAGTACTCGTGTGTTAAACAAAGTCG
TGAGTGGTGCTCATGGTCGATTCGCCTTTCTTGCGTCGCCGATTATTGGT
CTGGTGTTGCAACAACAGCCACACGGGAATTAATTCCATAGACTATATTG
GATTTCTTGTGAGTCTGCCGCCGCGGATTTCATTCTTTTGTCGTGAAGAG
TACCGAGCAGGGGGTTGGGCAGATAGATGTCAGCACGCTCCTCAATGTCA
ATGTCAAGACAACAAGAACAGCAACCTTTGGTCTGATAGTATCCTCGAAA
GTGCACTGACTCTGCTATAATAGATTCCCCCGCCCCCACCCTATCTATGC
TCTTGTCATGGCACGGTCTACTAGAACACCATTGTTCGCACGATTATGAT
TTGTTGAAAAACAAATGTGTTGTTGGTTCTTTAGTTCGTTTCCGGCTCGG
CGTGTGACGACTGTCCTCTTCGCACGTGTGTTCCTCTTCTCGTTTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTC
TCTCTTCTCCCTCCCCCACCCCTCCCTCTGTGTGTTTGTGTTATTATGGA
TTGTTTCAGCTACGAGCTGGACCAAGAAAGAGTGACTCCAACCACATACG
GCGAGAAGCGAGCCATCGCATCCCTACTCCAACCTGGCCGGCACGACGCC
CTCGTGATCAAGACCGCTCTACCGACAGACTCCTGCAACTTCGGCCTGGT
CGAAACGAGGCGGCTTGTGGGCGATGGATCTACCCACATACAGGTATGTT
GCGGTCGTTGTTGTCTTTACATTTCCCGTTCTGATCTCGACCCAGTGCCT
CCTGCCCCTCCTCCATGCTCTTCAAGAAAAGCAATTTCTGTTGCCATAGG
TTACCCGAAAGAAATGTGCATTGTTGAATACCGTCATCATCGGTTCTTCA
TTCCTCGTAACCTGACTACGCATATTACTTGAGTATTAAGACCCTCTGTG
CGGTGCCAAGCGCCTCTTGGAACTGACAACACTCTACAACCACGGTTGGT
TCTTGGGTTGTTGAAAAACGTTACTATTTCCAGTATTGCCGTTGCCATCG
TTCGATTCTAGTCTGGACAGGAGAGTTTGAGATTTTCACCTTTTCCGAAT
CCTCATCACGGCTCCTGTTCATTCGTGGATAATAAGCTCGAAACAGCAGA
ATCACATTTGATCCGGCAAAACGGGAGTTATTTTTTTGTAGAAGAGGAAT
TGCCGGTGTTCTTACGGTTCGGTTACTGTTTTGTTTTCTGATGGCACGAC
AGGAGCTTCTCCTTCGAAACCTCGACACCGGCGCACAGTCCATCACGAGG
CGCACCTGGGTGCGGGAACCTTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7244:3338..6061+

>mRNA_E_fasciculatus_S2_contig7244.15434.1 ID=mRNA_E_fasciculatus_S2_contig7244.15434.1|Name=mRNA_E_fasciculatus_S2_contig7244.15434.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=468bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7244:3338..6061+ (Ectocarpus fasciculatus EfasUO2)
ATGATGATGGCGTCACTCACCGGTTCTTGGGCCTTGGACGTTCACAGATC
GGACACTTTGGAAGCGTACCTCCGGTGCATGGGGGCACCAGGCGGGGTCA
TTGAGGCGCAGCTGGCCGGAGAGCAAGCCTGCCAGTCGCGCAACGTTCTC
GTTCTCGAAGGCTCCAGCCTCGTGGTGCACAAGCACACTTCGGTCAACAA
CTTCACCGAATCCTACGAGCTGGACCAAGAAAGAGTGACTCCAACCACAT
ACGGCGAGAAGCGAGCCATCGCATCCCTACTCCAACCTGGCCGGCACGAC
GCCCTCGTGATCAAGACCGCTCTACCGACAGACTCCTGCAACTTCGGCCT
GGTCGAAACGAGGCGGCTTGTGGGCGATGGATCTACCCACATACAGGAGC
TTCTCCTTCGAAACCTCGACACCGGCGCACAGTCCATCACGAGGCGCACC
TGGGTGCGGGAACCTTGA
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