mRNA_E_fasciculatus_S2_contig7243.15433.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7243.15433.1
Unique NamemRNA_E_fasciculatus_S2_contig7243.15433.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7243.15433.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7243contigE_fasciculatus_S2_contig7243:7105..7374 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size254
Hectar predicted targeting categoryother localisation
Exons2
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842388.3958757-CDS-E_fasciculatus_S2_contig7243:7104..71941696842388.3958757-CDS-E_fasciculatus_S2_contig7243:7104..7194Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7243 7105..7194 -
1696842388.4093494-CDS-E_fasciculatus_S2_contig7243:7211..73731696842388.4093494-CDS-E_fasciculatus_S2_contig7243:7211..7373Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7243 7212..7373 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842388.4199455-UTR-E_fasciculatus_S2_contig7243:7373..73741696842388.4199455-UTR-E_fasciculatus_S2_contig7243:7373..7374Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7243 7374..7374 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7243.15433.1prot_E_fasciculatus_S2_contig7243.15433.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7243 7105..7373 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7243.15433.1

>prot_E_fasciculatus_S2_contig7243.15433.1 ID=prot_E_fasciculatus_S2_contig7243.15433.1|Name=mRNA_E_fasciculatus_S2_contig7243.15433.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=84bp
MNGTCAALFLVFDSRAAWVREDNLATCAEPKRRSAPALLRATRPESQISP
PLRKRAINLNASVVRQHQLRSSSNQLAAGWAAGS
back to top

mRNA from alignment at E_fasciculatus_S2_contig7243:7105..7374-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7243.15433.1 ID=mRNA_E_fasciculatus_S2_contig7243.15433.1|Name=mRNA_E_fasciculatus_S2_contig7243.15433.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=270bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7243:7105..7374- (Ectocarpus fasciculatus EfasUO2)
CATGAATGGGACGTGCGCCGCCTTGTTCTTGGTATTCGACTCGCGAGCTG
CATGGGTACGGGAAGATAACCTTGCCACCTGCGCCGAGCCAAAAAGGCGC
AGCGCTCCTGCTCTCCTCCGTGCTACACGACCCGAATCACAGATATCTCC
TCCTTTGAGGAAGGCGGCACTCGCGCAGAGCGTGCAATCAACTTGAACGC
AAGCGTTGTACGACAACACCAGCTACGCAGCAGTAGCAACCAGCTGGCTG
CTGGCTGGGCAGCAGGCAGC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7243:7105..7374-

>mRNA_E_fasciculatus_S2_contig7243.15433.1 ID=mRNA_E_fasciculatus_S2_contig7243.15433.1|Name=mRNA_E_fasciculatus_S2_contig7243.15433.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=252bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7243:7105..7374- (Ectocarpus fasciculatus EfasUO2)
ATGAATGGGACGTGCGCCGCCTTGTTCTTGGTATTCGACTCGCGAGCTGC
ATGGGTACGGGAAGATAACCTTGCCACCTGCGCCGAGCCAAAAAGGCGCA
GCGCTCCTGCTCTCCTCCGTGCTACACGACCCGAATCACAGATATCTCCT
CCTTTGAGGAAGCGTGCAATCAACTTGAACGCAAGCGTTGTACGACAACA
CCAGCTACGCAGCAGTAGCAACCAGCTGGCTGCTGGCTGGGCAGCAGGCA
GC
back to top