mRNA_E_fasciculatus_S2_contig7243.15432.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7243.15432.1
Unique NamemRNA_E_fasciculatus_S2_contig7243.15432.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7243.15432.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIZ1_ECTSI)

HSP 1 Score: 434 bits (1115), Expect = 2.090e-143
Identity = 311/406 (76.60%), Postives = 314/406 (77.34%), Query Frame = 1
Query:   10 TQDFSGRNVGDSEDSVVVSRDSSAEEITAGAAQSISAAPAPSLPWGTVAPSPDSSQPLPGPWGRLQEVMDEIKVMSPASPTSRVPHPFLSGARPSSTPAAEERKGFARTSSPPSFSTGGHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHQVTSPPTPAASAANTPREAPTPAVQQPVAPASSLPSSGHLAAVEEQSQQSXXXPRASAAAADGNEPGVDTKQEREEETPPVPVPGWALGYSTSASFSSAATGTRGVGGEVAATAAXXXXXXXXXXXXXXXXXXXXHGCSDEAGEVLEGLRGDDAAEDLANVRAVLPVEDAAATSGPGYVGQRFIQAAEALSESPQLRRAAGAAATAVSAAAGTARVQFTYTSRTIGK 1227
            TQDF+ RNVGDSEDSV VSRDSSAEE+TA AA SISAAPAPSLPWG VAPSPDSSQPLPGPWGRLQEVMDEIKVMSPASPTSRVPHPFLSGARPSST AAEERKGFARTSSP    T G                XXXXXXX       XXXXXXXXXXXXXXXXXXX           QVTSPPTPAA AANTP E P  AVQQPVAPASSLPSS HLAAVE      XXX       AD NEPGV TKQEREEETPPVPVPG ALGYSTS  FSSAATGTRG GGEVAATAA XXXXXXX            HG SD+AGE  E LRGDD AEDL NVRAVLPVED AAT G GYVGQRFIQAAEALSESPQLRRAAGAAATAVSAAAGTARVQFTYTSRTIGK
Sbjct:    3 TQDFARRNVGDSEDSVAVSRDSSAEEVTAEAAHSISAAPAPSLPWGRVAPSPDSSQPLPGPWGRLQEVMDEIKVMSPASPTSRVPHPFLSGARPSSTAAAEERKGFARTSSPLPMPTRGR---------IAGSSSXXXXXXXRIADSRQXXXXXXXXXXXXXXXXXXXPRSLSPSSSPRQVTSPPTPAALAANTPCETPPTAVQQPVAPASSLPSSQHLAAVEXXXXXXXXXXXXXXXXADANEPGVHTKQEREEETPPVPVPGLALGYSTSPPFSSAATGTRGAGGEVAATAAPXXXXXXXSDSGAAPVGTASHGFSDQAGEEPEDLRGDDTAEDLVNVRAVLPVEDDAATGGRGYVGQRFIQAAEALSESPQLRRAAGAAATAVSAAAGTARVQFTYTSRTIGK 399          
BLAST of mRNA_E_fasciculatus_S2_contig7243.15432.1 vs.
Match: GOLD (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIZ0_ECTSI)

HSP 1 Score: 371 bits (952), Expect = 3.360e-120
Identity = 242/307 (78.83%), Postives = 250/307 (81.43%), Query Frame = 1
Query: 1207 TSRTIGKILVASAKSFEEFVDEQLQEDGSGQVLRREGATGLLVPRGKQLSQAFIVAPGCCLCWEFRVKDHDLGFALRRRFQGMGGSTEEDIFELKRQACSLDTFQGRWTADSDRNAPAVVIMVWDNSYSCLRPKTLAYKAQVNRPGIDPAAPXXXXXXXXXXXXXXXXXXAFGGGVGSVGGGEDTEAFAIDESEGEETSAYSAGVSTDRARVAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVPKTINIEEFLAMPETGRGDEVGGDRDDGA--DDGASK 2121
            TS    +ILVASAKSFEEFVDEQLQEDGSGQVLRREG TGLLVPRGKQLSQAFIVAPGCCLCWEFRVKD+DLGFALRRRFQGMGGSTEEDIFELKR + S +TFQGRWTA+SD +APAVVIMVWDNSYSCLRPKTLAYKAQVNRPGIDPAAPXXXXXXXXXXXXXX    AFGG VGSVGG EDTEAFAIDESEGEETSAYSAGV TDRARVAV   XXXXXXXXXXXXXXX                       XXXXXX       GVPKT+NIE+FLAMPETG GD  GGDRD  A  DD ASK
Sbjct:   10 TSHDAVQILVASAKSFEEFVDEQLQEDGSGQVLRREGGTGLLVPRGKQLSQAFIVAPGCCLCWEFRVKDYDLGFALRRRFQGMGGSTEEDIFELKRYS-SAETFQGRWTANSDSDAPAVVIMVWDNSYSCLRPKTLAYKAQVNRPGIDPAAPXXXXXXXXXXXXXXQPPVAFGGSVGSVGGAEDTEAFAIDESEGEETSAYSAGVGTDRARVAVGSGXXXXXXXXXXXXXXXGVDASATTTSRRQGADPTIRGKGXXXXXXWREMEGEGVPKTVNIEDFLAMPETGSGDGGGGDRDGAAADDDSASK 315          
BLAST of mRNA_E_fasciculatus_S2_contig7243.15432.1 vs.
Match: GOLD (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBJ5_9STRA)

HSP 1 Score: 128 bits (321), Expect = 4.990e-27
Identity = 66/156 (42.31%), Postives = 99/156 (63.46%), Query Frame = 1
Query: 1186 ARVQFTYTSRTIGKILVASAKSFEEFVDEQLQEDGSGQVLRREGATGLLVPRGKQLSQAFIVAPGCCLCWEFRVKDHDLGFALRRRFQGMGGSTEEDIFELKRQACSLDTFQGRWTADSDRNAPAVVIMVWDNSYSCLRPKTLAYKAQVNRPGIDP 1653
            A+  +  TS+T+ + +       ++ V E  +E+   +V+R +    L VPRG + S  ++V  GC +CWE+RVKD+D+GFA+R R Q MGG+ EEDI  + R   S +  +G+WTAD DR+    V+++WDN +S LR KTLAYK +V+RPG  P
Sbjct:  333 AKDTYATTSQTVAEAIALGHIKLDQIVAEADREEFY-EVIRTDALMDLTVPRGGRYSLPYLVQQGCSICWEYRVKDYDIGFAVRLRLQAMGGAIEEDICSMARFG-SGEAHRGKWTADEDRS----VVLIWDNKFSMLRSKTLAYKVEVHRPGRPP 482          
BLAST of mRNA_E_fasciculatus_S2_contig7243.15432.1 vs.
Match: Hypothetical (protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HLX1_POLGL)

HSP 1 Score: 94.4 bits (233), Expect = 6.490e-17
Identity = 56/145 (38.62%), Postives = 82/145 (56.55%), Query Frame = 1
Query: 1213 RTIGKILVASAKSFEEFVDEQLQEDGSGQVLRREGATGLLVPRGKQLSQAFIVAPGCCLCWEFRVKDHDLGFALRRRFQGMGGSTEEDIFELKRQACSLDTFQGRWTADSDRNAPAVVIMVWDNSYSCLRPKTLAYKAQVNRPGI 1647
            RT G   VA   S  + ++   +E+   + ++ +GA  L VP   + + A+ V+ G  L W FRVKDHD+GFA+R R Q  GGS EE++  ++R   + DT  G W AD DR     +I+ +DN YS LR KT+AY     +P +
Sbjct:  238 RTEGVSAVAWKGSARDTLENAAREE-QWKGIKIQGAEELAVPARTEHTCAYHVSKGSTLRWTFRVKDHDIGFAVRMRIQVWGGSQEEEVLSIERYD-NADTISGSWVADEDRT----MILAFDNRYSKLRSKTVAYLVGTEKPPV 376          
BLAST of mRNA_E_fasciculatus_S2_contig7243.15432.1 vs.
Match: Hypothetical (protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A813AZC1_9DINO)

HSP 1 Score: 89.7 bits (221), Expect = 3.020e-16
Identity = 55/145 (37.93%), Postives = 81/145 (55.86%), Query Frame = 1
Query: 1213 RTIGKILVASAKSFEEFVDEQLQEDGSGQVLRREGATGLLVPRGKQLSQAFIVAPGCCLCWEFRVKDHDLGFALRRRFQGMGGSTEEDIFELKRQACSLDTFQGRWTADSDRNAPAVVIMVWDNSYSCLRPKTLAYKAQVNRPGI 1647
            RT G   VA   S  + +D   +E+   + ++ +GA  L VP   + + A+ V  G  L W FRVK+HD+GFA+R R Q  GG+ EE++  ++R   + DT  G W AD DR     +I+ +DN YS LR KT+AY     +P +
Sbjct:   99 RTEGVSAVAWRGSARDTLDIAAREE-QWKDIKVQGAEELSVPARTEHTCAYHVTKGSTLRWTFRVKEHDVGFAVRMRVQVWGGAQEEEVLAMERYD-NKDTISGSWVADEDRT----MILAFDNKYSKLRAKTVAYIVGTEKPPV 237          
BLAST of mRNA_E_fasciculatus_S2_contig7243.15432.1 vs.
Match: Hypothetical (protein n=2 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1MKL5_ALECA)

HSP 1 Score: 90.5 bits (223), Expect = 4.160e-16
Identity = 48/113 (42.48%), Postives = 67/113 (59.29%), Query Frame = 1
Query: 1303 LRREGATGLLVPRGKQLSQAFIVAPGCCLCWEFRVKDHDLGFALRRRFQGMGGSTEEDIFELKRQACSLDTFQGRWTADSDRNAPAVVIMVWDNSYSCLRPKTLAYKAQVNRP 1641
            ++ +GA  L VP   + + A+ VA G  L W FRVKDHD+GFA+R R Q  GGS EE++  ++R   S DT  G W AD  +     +++ +DN YS LR KT+AY     +P
Sbjct:  173 IKVQGAEELSVPARTEHTSAYHVAKGSTLRWTFRVKDHDIGFAVRMRVQEWGGSREEEVLGVERYD-STDTISGSWVADEAQT----IVLAFDNRYSRLRAKTVAYLVGTEKP 280          
BLAST of mRNA_E_fasciculatus_S2_contig7243.15432.1 vs.
Match: Hypothetical (protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812PXX9_9DINO)

HSP 1 Score: 89.7 bits (221), Expect = 1.210e-15
Identity = 55/145 (37.93%), Postives = 81/145 (55.86%), Query Frame = 1
Query: 1213 RTIGKILVASAKSFEEFVDEQLQEDGSGQVLRREGATGLLVPRGKQLSQAFIVAPGCCLCWEFRVKDHDLGFALRRRFQGMGGSTEEDIFELKRQACSLDTFQGRWTADSDRNAPAVVIMVWDNSYSCLRPKTLAYKAQVNRPGI 1647
            RT G   VA   S  + +D   +E+   + ++ +GA  L VP   + + A+ V  G  L W FRVK+HD+GFA+R R Q  GG+ EE++  ++R   + DT  G W AD DR     +I+ +DN YS LR KT+AY     +P +
Sbjct:  187 RTEGVSAVAWRGSARDTLDIAAREE-QWKDIKVQGAEELSVPARTEHTCAYHVTKGSTLRWTFRVKEHDVGFAVRMRVQVWGGAQEEEVLAMERYD-NKDTISGSWVADEDRT----MILAFDNKYSKLRAKTVAYIVGTEKPPV 325          
BLAST of mRNA_E_fasciculatus_S2_contig7243.15432.1 vs.
Match: Hypothetical (protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812ZCU9_9DINO)

HSP 1 Score: 90.5 bits (223), Expect = 6.960e-15
Identity = 55/145 (37.93%), Postives = 81/145 (55.86%), Query Frame = 1
Query: 1213 RTIGKILVASAKSFEEFVDEQLQEDGSGQVLRREGATGLLVPRGKQLSQAFIVAPGCCLCWEFRVKDHDLGFALRRRFQGMGGSTEEDIFELKRQACSLDTFQGRWTADSDRNAPAVVIMVWDNSYSCLRPKTLAYKAQVNRPGI 1647
            RT G   VA   S  + +D   +E+   + ++ +GA  L VP   + + A+ V  G  L W FRVK+HD+GFA+R R Q  GG+ EE++  ++R   + DT  G W AD DR     +I+ +DN YS LR KT+AY     +P +
Sbjct:  188 RTEGVSAVAWRGSARDTLDIAAREE-QWKDIKVQGAEELSVPARTEHTCAYHVTKGSTLRWTFRVKEHDIGFAVRMRIQVWGGAQEEEVLAMERYD-NKDTISGSWVADEDRT----MILAFDNKYSKLRAKTVAYIVGTEKPPV 326          
BLAST of mRNA_E_fasciculatus_S2_contig7243.15432.1 vs.
Match: GOLD (domain-containing protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9DTX3_SYMMI)

HSP 1 Score: 89.7 bits (221), Expect = 9.000e-15
Identity = 55/145 (37.93%), Postives = 81/145 (55.86%), Query Frame = 1
Query: 1213 RTIGKILVASAKSFEEFVDEQLQEDGSGQVLRREGATGLLVPRGKQLSQAFIVAPGCCLCWEFRVKDHDLGFALRRRFQGMGGSTEEDIFELKRQACSLDTFQGRWTADSDRNAPAVVIMVWDNSYSCLRPKTLAYKAQVNRPGI 1647
            RT G   VA   S  + +D   +E+   + ++ +GA  L VP   + + A+ V  G  L W FRVK+HD+GFA+R R Q  GG+ EE++  ++R   + DT  G W AD DR     +I+ +DN YS LR KT+AY     +P +
Sbjct:  188 RTEGVSAVAWRGSARDTLDIAAREE-QWKDIKVQGAEELSVPARTEHTCAYHVTKGSTLRWTFRVKEHDVGFAVRMRVQVWGGAQEEEVLAMERYD-NKDTISGSWVADEDRT----MILAFDNKYSKLRAKTVAYIVGTEKPPV 326          
BLAST of mRNA_E_fasciculatus_S2_contig7243.15432.1 vs.
Match: Hypothetical (protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AHQ6_NOCSC)

HSP 1 Score: 83.6 bits (205), Expect = 2.010e-13
Identity = 43/106 (40.57%), Postives = 64/106 (60.38%), Query Frame = 1
Query: 1303 LRREGATGLLVPRGKQLSQAFIVAPGCCLCWEFRVKDHDLGFALRRRFQGMGGSTEEDIFELKRQACSLDTFQGRWTADSDRNAPAVVIMVWDNSYSCLRPKTLAY 1620
            ++  GA  ++VP   + +  + V  G  L W FRVKD+D+GF  R R Q  GGS EE++  ++R   S DT  G W AD +R     +++V+DN+YS LR KT+A+
Sbjct:  224 IKIRGAEEIVVPARTEHTSVYHVHKGTTLRWTFRVKDNDIGFGTRIRVQAWGGSKEEEVLAVERYD-SADTISGSWVADEERT----MVLVFDNTYSRLRSKTIAF 324          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7243.15432.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
Uncharacterized2.090e-14376.60protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
GOLD3.360e-12078.83domain-containing protein n=1 Tax=Ectocarpus silic... [more]
GOLD4.990e-2742.31domain-containing protein n=1 Tax=Tribonema minus ... [more]
Hypothetical6.490e-1738.62protein n=1 Tax=Polarella glacialis TaxID=89957 Re... [more]
Hypothetical3.020e-1637.93protein n=1 Tax=Symbiodinium necroappetens TaxID=1... [more]
Hypothetical4.160e-1642.48protein n=2 Tax=Alexandrium catenella TaxID=2925 R... [more]
Hypothetical1.210e-1537.93protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A8... [more]
Hypothetical6.960e-1537.93protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=63... [more]
GOLD9.000e-1537.93domain-containing protein n=1 Tax=Symbiodinium mic... [more]
Hypothetical2.010e-1340.57protein n=1 Tax=Noctiluca scintillans TaxID=2966 R... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7243contigE_fasciculatus_S2_contig7243:504..6064 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score374.0
Seed ortholog evalue1.5e-100
Seed eggNOG ortholog2880.D7FIZ0
Model size2124
Hectar predicted targeting categoryother localisation
Exons7
EggNOG OGs2F1MD@1,2T2M0@2759
Ec32 ortholog descriptionGOLD
Ec32 orthologEc-07_005060.1
Cds size2124
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7243.15432.1prot_E_fasciculatus_S2_contig7243.15432.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7243 504..6064 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842388.4569392-CDS-E_fasciculatus_S2_contig7243:503..10041696842388.4569392-CDS-E_fasciculatus_S2_contig7243:503..1004Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7243 504..1004 -
1696842388.4692335-CDS-E_fasciculatus_S2_contig7243:1768..18791696842388.4692335-CDS-E_fasciculatus_S2_contig7243:1768..1879Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7243 1769..1879 -
1696842388.4871304-CDS-E_fasciculatus_S2_contig7243:2358..24601696842388.4871304-CDS-E_fasciculatus_S2_contig7243:2358..2460Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7243 2359..2460 -
1696842388.4975607-CDS-E_fasciculatus_S2_contig7243:2621..28041696842388.4975607-CDS-E_fasciculatus_S2_contig7243:2621..2804Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7243 2622..2804 -
1696842388.514395-CDS-E_fasciculatus_S2_contig7243:3781..38981696842388.514395-CDS-E_fasciculatus_S2_contig7243:3781..3898Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7243 3782..3898 -
1696842388.5279746-CDS-E_fasciculatus_S2_contig7243:4283..51831696842388.5279746-CDS-E_fasciculatus_S2_contig7243:4283..5183Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7243 4284..5183 -
1696842388.5387664-CDS-E_fasciculatus_S2_contig7243:5854..60641696842388.5387664-CDS-E_fasciculatus_S2_contig7243:5854..6064Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7243 5855..6064 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7243.15432.1

>prot_E_fasciculatus_S2_contig7243.15432.1 ID=prot_E_fasciculatus_S2_contig7243.15432.1|Name=mRNA_E_fasciculatus_S2_contig7243.15432.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=708bp
MEQTQDFSGRNVGDSEDSVVVSRDSSAEEITAGAAQSISAAPAPSLPWGT
VAPSPDSSQPLPGPWGRLQEVMDEIKVMSPASPTSRVPHPFLSGARPSST
PAAEERKGFARTSSPPSFSTGGHPAGSSSASASTSSRIADSGQQPRQQEE
KQQQRPPPPPQQQQQQQQQQARRSLSPSSSPHQVTSPPTPAASAANTPRE
APTPAVQQPVAPASSLPSSGHLAAVEEQSQQSASSPRASAAAADGNEPGV
DTKQEREEETPPVPVPGWALGYSTSASFSSAATGTRGVGGEVAATAAPTA
TAAAGSDSGAAPIGTASHGCSDEAGEVLEGLRGDDAAEDLANVRAVLPVE
DAAATSGPGYVGQRFIQAAEALSESPQLRRAAGAAATAVSAAAGTARVQF
TYTSRTIGKILVASAKSFEEFVDEQLQEDGSGQVLRREGATGLLVPRGKQ
LSQAFIVAPGCCLCWEFRVKDHDLGFALRRRFQGMGGSTEEDIFELKRQA
CSLDTFQGRWTADSDRNAPAVVIMVWDNSYSCLRPKTLAYKAQVNRPGID
PAAPPPPPPTTPAAMSAAQPPVAFGGGVGSVGGGEDTEAFAIDESEGEET
SAYSAGVSTDRARVAVSSGGGGGGGGEEAGVGVGDKGGYDASATATSRRQ
RSNPTKGEGEGEGGREREGEGVPKTINIEEFLAMPETGRGDEVGGDRDDG
ADDGASK*
back to top

mRNA from alignment at E_fasciculatus_S2_contig7243:504..6064-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7243.15432.1 ID=mRNA_E_fasciculatus_S2_contig7243.15432.1|Name=mRNA_E_fasciculatus_S2_contig7243.15432.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5561bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7243:504..6064- (Ectocarpus fasciculatus EfasUO2)
ATGGAGCAGACGCAAGATTTTTCCGGGAGGAACGTCGGAGATTCGGAGGA CTCAGTGGTGGTCTCGAGAGACTCATCGGCGGAAGAAATAACAGCCGGGG CTGCCCAAAGTATCAGTGCTGCGCCTGCCCCTTCTCTACCATGGGGGACG GTCGCACCCTCACCCGACAGCTCTCAGCCGCTGCCTGGTCCCTGGGGACG GCTGCAAGAGGTGAGTGTAGTTTTTTCTTGTTCAACTTGGTTCAAACGTA CTGCTTGTAGCATGGTTGCGAAAAAAATAATCTCGCGTCTCGTGACGTGT ACCGTGTACCACCTTTTTTTCCTGTGGCTCTTTTACCGTTCAGGGAATTT GGGTCTGCTTTTTCAGCGATGTTGCATTCGGTTGCCAGGGTGTACCTTCT GAGCATGGCTGAGCTCTAGGCACTCGCCTCCGCGCTTGTTGGAGAGTCAG AAGGAAGAGTCAAATTCATAGGAGAAAAAATGCCGCGTGCAAAAAAAATA AAGCTTGGGCAACGTGGGTTCCCTTGGACACTTCTGTGTTACCGTGCCAA CTTGTGTATCAAAGATCTCAGACTCATTTATTTTGCTCTGCAATAGGAAA TGGTGCTTAGAATGATCTCGTGCAGTATTAATATTACTTTGAATCATCTC GCGCAATATTAGTAGTCTAGTGCTTAGAGCCATTGCGCCCAATATCGTTT TTCTCGGTTCTACGCATGGCATAGAATCTACTCTGAATCGTCACATTGGC GAGCTTATAAGGGCTTTAAGGGCATACCACATTTTTCAGTGTTTGCTGTC CCTGAATTACCATTCCGAGCCGAGCCGAGCCGAACGTTATGCCTCTTCCC CTCAACGTTTTTTCTCCACCCGCGCGAGCAGGTCATGGACGAGATCAAGG TGATGAGCCCTGCCTCCCCAACTTCCCGGGTGCCGCACCCCTTCCTTTCC GGGGCCCGCCCATCCTCTACTCCGGCTGCCGAAGAACGCAAAGGCTTCGC TCGCACTTCCTCACCCCCGTCTTTTTCCACCGGAGGCCATCCCGCGGGCT CTTCTTCCGCATCTGCATCCACATCCTCCCGCATCGCCGATAGCGGCCAA CAGCCACGGCAACAGGAAGAGAAGCAGCAGCAGCGGCCGCCGCCGCCGCC GCAGCAGCAGCAGCAACAACAACAGCAACAGGCTCGAAGATCTCTGTCTC CGTCGTCATCGCCTCACCAAGTCACGTCGCCCCCGACACCGGCTGCTTCG GCCGCAAACACGCCGCGTGAGGCGCCGACGCCCGCCGTTCAGCAGCCGGT AGCACCGGCGTCAAGCTTGCCCTCATCTGGGCACCTCGCAGCCGTAGAGG AGCAATCGCAGCAGTCAGCGTCATCCCCAAGAGCGAGCGCGGCCGCGGCG GATGGCAATGAACCCGGCGTCGATACGAAGCAGGAGCGAGAAGAGGAAAC GCCGCCTGTACCTGTACCAGGGTGGGCACTGGGCTACTCTACTTCAGCAT CGTTTTCGTCTGCGGCGACGGGCACGAGAGGTGTGGGGGGCGAGGTGGCG GCGACGGCAGCGCCTACAGCGACGGCGGCGGCAGGCAGCGATTCGGGGGC AGCGCCCATTGGAACGGCTAGCCATGGTTGTAGCGACGAAGCTGGGGAAG TACTCGAAGGGCTAAGGGGTGATGATGCGGCCGAGGACCTCGCGAACGTT CGTGCTGTGCTACCAGTGGAGGATGCTGCTGCCACGAGTGGGCCCGGCTA CGTGGGACAGAGATTCATTCAGGCTGCAGAGGTGAGGACTCTAAGTGTTG CGGTATTGCGTACGTAGACGGAGTTGGTTCTTGCCTTGACGAGGGGAGGC ATCCGTCGACCATGACACCTTTTAGCACCTCGCCCGTGTAGGAGGTGTGC GCATCCAAGCCGGAGCGTTCTAACACCAGGTGCAAATCAGAACCGAACTG TGGTGGCCGCCAAACCGTACACTCGAGGAAGAACCGGGCACTACAAGTGT GGCCGCTGCGAATGCTGCTGCCAACGGCGACAGTCGTGTTGTACTATTTC GGCAAACTGGCCACCCGCGTGTGAGACACGCCGCAACATTCTCTGACGGC GCCTGCTGTTTATGCCCTGCTTTTCGACGTTCTGAACACTCTTTCACCAT TCCCAACATGAAACAGGCCCTCAGCGAGTCCCCGCAACTACGGCGTGCGG CAGGAGCGGCGGCGACGGCCGTGTCGGCCGCTGCCGGTACGGCCAGGGTT CAGTTCACGTACACGTCCAGAACCATCGGCAAGGTACGTTCGTTCAGATC TATATATGTGTTCCACGACACAAGAATGGCGCGAAAGAAAACGAGGATAC GGTATCTAGGGTGGATGGCTTGCGCGATGTTCACGAATTTGCTGGCTTTT AGTGAAGGACTATTGTCTTGTAGATATGCGAACCTCTACAGTCACTGTAG TTCGAGTACGATCGTTGCGGTGAAGCACGATTATTGGGGGAGAGTACATG TTGCATCTACAAGTCGTTCTTGGGATGGTAAGTAGTGGAGGAGACGGAGG AAAACATTTCGGAAGGCTGGCTTGTTGTCTCGGTGACGTCGTTATTTGTT TTATGTCGTAACAGAACAGCTAACGTTGACCCCCGGTACAGCAGTATTGA AGAGTGTTTTTATGTGAGAAGCATAACGTATTCTGCTTAAGGATGGACCC TTCCGATTGAGTTGCCCCCAACCACCCCAATTTTGATGGCCTAGAATACG GTAGCACGCGACATAGAATTGGCGGCGGGGAACATGTTCTGTTTTTCGCG TGCATGTGTGGTGCCATCAAGACTCACACGACACCTTGAAACACACCCAA GTCTTCGAGGCGCGGAAGACGTCTTCCATGATGCTATTGATATTTGTAGC GTCTTGAACTTCAATCTCTGGCTAAGTACCAGGTGGTTTTCGCCCCCACC CCTCGGGGATTTTTCTCCTGGTGTCTCTCTCCTTGTTACCGGGCAGCTCA CCCCTGTAAGAATTGGCACTGGGACGCGTCTTCATCACGTTTTGACGCTA AACAGAAAAATTGCACAGAAAGAATATGACGGTTGTGTACTGCTGTTCAG CATCGTTCTGGAGAGCAGTCATGACGCACGACATAGACTAGCGCTGATAG TTGGTCGTACCCTATCCCTATCGTTCCCTGCCGTCCCTTGTGCCCCCGGT GGTCTGATACCTTATGATCTCCCTTGCCGTGCGGCATAAATTCACGTGAT GCCGTGTAAGATCCTTGTGGCGAGCGCGAAGTCGTTCGAGGAGTTCGTGG ACGAACAGCTGCAGGAGGACGGGTCGGGGCAAGTCCTGAGGAGGGAGGGC GCCACGGGGCTCCTCGTTCCGCGCGGCAAGCAGCTGTCTCAGGCATTCAT CGTCGCGCCAGGCTGCTGCCTGTGCTGGGAGTTCAGGGTAAAGGTGAGAC GCAAGTAGCTGATGCTTCGCCACGTTTCTGAAACCTATGTACGTTCTCCA GCAGCTTCAAGGTACTGTTTCTCTCATGTTGTGTGTTCTTCTGTTGAGAC TGATGCTCGTTGCCTCCCTTTCTCGCAATACTTGTTCTGGAAATGGCACA CCAGGACCACGACCTCGGCTTCGCGCTACGGCGCCGCTTTCAAGGCATGG GTGGGTCGACAGAGGAAGACATTTTCGAGCTCAAAAGGCAAGCCTGCAGT CTCGATGTAGTCCACAACGTTTTTGGCCGTGAAGGAATATGAGCGCTTCG AAAATGGCCCTAGAACGTCCTTGCCGCACCAGGTTTGCTACGAAAGCGTT CAACGTTCGAATGGAGAGTGAGGAAAATGATGGAGTATATTTTCATTCGG TGCGGGCCAGGCAGGCTTTCATGCCCGGCTGAGGTAGGTGCCCGAAATAC AGAGCTTCGAACTCAGATCATTTCCGTGTCCGACCTAAAACGAAAAATAG CTCGAGCCTTTACAATCGGATTTGATCGCACTCCTGGCTCCTTCTCCATA CGGGAAAGAGAAACTCCATGTTTCCAATCCACCCACTATCTCAATCAGTT TAGCGAGGGCCGGGCAAAACGCGTCTTTTATGGAGGAGGAAACCTTGCGA TGCTTGCTAGCACCCCCCGCAGATGATCAGATGCTGATTTGTTTATTATT CGAACTGTTTGCTCTGCAGGTACTCGTCCGGAGAGACTTTCCAAGGACGG TGGACCGCCGACAGCGACCGTAACGCTCCTGCCGTGGTAATCATGGTGTG GGACAACTCCTACAGCTGCCTCAGACCGAAGACTCTCGCCTACAAGGTTC GCCGTGTTGTAGCCCTCCCCACCCTCTCACCAAACTTTTAGTGTACATTG TACAACGACTAGCTAAATGGGCTAACTGCTTTCAATCTCGACACACTCCC TGTCACAGGGAACCCCCCCCCAAAGCATACCGTAGTAAAACGGAGCGCAA GAATTCCAGATGAACGAAGTATGGCTTCAGTGCCGTATTTGGAGTAGCAC TCTCAATCAAGTGTCAAGTCGCTTTCCTCCAAACACAAGCGGTGCTGAGG TACAAGGATTGTTGCGTCAAGATTTGGAAATTTTGCAAGCGAATGGCGGC GAGGCATTGAAGTGGGTGCGACAGAAGTACACCCGTTGCCGAACGAATGG AAAGAATTAAAGTTGAACCGTGTACCAACTTCCGAGGGGATAGGGTTCGC TTTACGACCAGAGGAGCCGGGGCTGTACGAAGATTTCGAGAGCATCGGCT CCTTCCCGCTAGCAGCGTACAATTGCGTGGGAGCGTTGACGAGCCAGATG GCAGAAAATGCAGTGCACTCGATTGTTGTCCTGATTTTCGGCAGATTCTT CGGGCTCTCAATGTCATCCTCCGCCGTGTGTCCCCCCTGGTGTCGGAAAC CGGACCTTTGCTTCACGAGCGGTGGTGCAAAGGCGTCTAACCGCACGAAA GAGGAAGTGAGTAAAGTAACCCCCCCTCCCCCCTCGGTAGCGTAACAACA ATCAACCCTTCTTGAATCCCCCCTCTTCTCCCCTCTCCATCAAACCACTT TGTCAACCAGGCTCAGGTAAATCGACCAGGGATTGACCCGGCGGCGCCCC CCCCGCCGCCGCCCACGACCCCGGCCGCCATGTCTGCCGCGCAACCTCCC GTGGCATTCGGCGGCGGCGTCGGCAGCGTGGGGGGAGGGGAAGACACAGA AGCCTTCGCAATCGACGAGTCTGAGGGCGAGGAGACTTCCGCCTACTCCG CGGGCGTTAGCACCGACCGTGCTCGTGTTGCTGTTAGCAGTGGTGGTGGT GGTGGTGGTGGTGGCGAGGAAGCGGGCGTGGGAGTAGGAGACAAGGGCGG ATATGACGCGTCGGCAACGGCAACTTCTAGGCGGCAGCGTTCCAACCCGA CGAAAGGAGAGGGGGAGGGAGAGGGAGGGAGAGAGAGAGAGGGAGAGGGG GTCCCGAAAACGATCAATATCGAAGAGTTCTTGGCGATGCCCGAGACTGG AAGAGGCGATGAAGTGGGTGGCGATCGTGATGATGGTGCCGATGATGGTG CGTCAAAGTGA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7243:504..6064-

>mRNA_E_fasciculatus_S2_contig7243.15432.1 ID=mRNA_E_fasciculatus_S2_contig7243.15432.1|Name=mRNA_E_fasciculatus_S2_contig7243.15432.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=2124bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7243:504..6064- (Ectocarpus fasciculatus EfasUO2)
ATGGAGCAGACGCAAGATTTTTCCGGGAGGAACGTCGGAGATTCGGAGGA
CTCAGTGGTGGTCTCGAGAGACTCATCGGCGGAAGAAATAACAGCCGGGG
CTGCCCAAAGTATCAGTGCTGCGCCTGCCCCTTCTCTACCATGGGGGACG
GTCGCACCCTCACCCGACAGCTCTCAGCCGCTGCCTGGTCCCTGGGGACG
GCTGCAAGAGGTCATGGACGAGATCAAGGTGATGAGCCCTGCCTCCCCAA
CTTCCCGGGTGCCGCACCCCTTCCTTTCCGGGGCCCGCCCATCCTCTACT
CCGGCTGCCGAAGAACGCAAAGGCTTCGCTCGCACTTCCTCACCCCCGTC
TTTTTCCACCGGAGGCCATCCCGCGGGCTCTTCTTCCGCATCTGCATCCA
CATCCTCCCGCATCGCCGATAGCGGCCAACAGCCACGGCAACAGGAAGAG
AAGCAGCAGCAGCGGCCGCCGCCGCCGCCGCAGCAGCAGCAGCAACAACA
ACAGCAACAGGCTCGAAGATCTCTGTCTCCGTCGTCATCGCCTCACCAAG
TCACGTCGCCCCCGACACCGGCTGCTTCGGCCGCAAACACGCCGCGTGAG
GCGCCGACGCCCGCCGTTCAGCAGCCGGTAGCACCGGCGTCAAGCTTGCC
CTCATCTGGGCACCTCGCAGCCGTAGAGGAGCAATCGCAGCAGTCAGCGT
CATCCCCAAGAGCGAGCGCGGCCGCGGCGGATGGCAATGAACCCGGCGTC
GATACGAAGCAGGAGCGAGAAGAGGAAACGCCGCCTGTACCTGTACCAGG
GTGGGCACTGGGCTACTCTACTTCAGCATCGTTTTCGTCTGCGGCGACGG
GCACGAGAGGTGTGGGGGGCGAGGTGGCGGCGACGGCAGCGCCTACAGCG
ACGGCGGCGGCAGGCAGCGATTCGGGGGCAGCGCCCATTGGAACGGCTAG
CCATGGTTGTAGCGACGAAGCTGGGGAAGTACTCGAAGGGCTAAGGGGTG
ATGATGCGGCCGAGGACCTCGCGAACGTTCGTGCTGTGCTACCAGTGGAG
GATGCTGCTGCCACGAGTGGGCCCGGCTACGTGGGACAGAGATTCATTCA
GGCTGCAGAGGCCCTCAGCGAGTCCCCGCAACTACGGCGTGCGGCAGGAG
CGGCGGCGACGGCCGTGTCGGCCGCTGCCGGTACGGCCAGGGTTCAGTTC
ACGTACACGTCCAGAACCATCGGCAAGATCCTTGTGGCGAGCGCGAAGTC
GTTCGAGGAGTTCGTGGACGAACAGCTGCAGGAGGACGGGTCGGGGCAAG
TCCTGAGGAGGGAGGGCGCCACGGGGCTCCTCGTTCCGCGCGGCAAGCAG
CTGTCTCAGGCATTCATCGTCGCGCCAGGCTGCTGCCTGTGCTGGGAGTT
CAGGGTAAAGGACCACGACCTCGGCTTCGCGCTACGGCGCCGCTTTCAAG
GCATGGGTGGGTCGACAGAGGAAGACATTTTCGAGCTCAAAAGGCAAGCC
TGCAGTCTCGATACTTTCCAAGGACGGTGGACCGCCGACAGCGACCGTAA
CGCTCCTGCCGTGGTAATCATGGTGTGGGACAACTCCTACAGCTGCCTCA
GACCGAAGACTCTCGCCTACAAGGCTCAGGTAAATCGACCAGGGATTGAC
CCGGCGGCGCCCCCCCCGCCGCCGCCCACGACCCCGGCCGCCATGTCTGC
CGCGCAACCTCCCGTGGCATTCGGCGGCGGCGTCGGCAGCGTGGGGGGAG
GGGAAGACACAGAAGCCTTCGCAATCGACGAGTCTGAGGGCGAGGAGACT
TCCGCCTACTCCGCGGGCGTTAGCACCGACCGTGCTCGTGTTGCTGTTAG
CAGTGGTGGTGGTGGTGGTGGTGGTGGCGAGGAAGCGGGCGTGGGAGTAG
GAGACAAGGGCGGATATGACGCGTCGGCAACGGCAACTTCTAGGCGGCAG
CGTTCCAACCCGACGAAAGGAGAGGGGGAGGGAGAGGGAGGGAGAGAGAG
AGAGGGAGAGGGGGTCCCGAAAACGATCAATATCGAAGAGTTCTTGGCGA
TGCCCGAGACTGGAAGAGGCGATGAAGTGGGTGGCGATCGTGATGATGGT
GCCGATGATGGTGCGTCAAAGTGA
back to top