|
|
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7236.15424.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWW8_9PHAE) HSP 1 Score: 432 bits (1112), Expect = 1.910e-144 Identity = 268/363 (73.83%), Postives = 276/363 (76.03%), Query Frame = 2
Query: 32 MFVSARWQRNALRLVASVLFFESALSFAPPAVQRQPALFCSSSPLILPAATGALQRRSSSNGASFWPGRAAVAGYRHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDVADAAADGDAQSSKAQTPQVPPKTGAMQAXXXXXXXXXXXXXXDSDFLFEQKLESVRAAVLCGSVGAASRLLAVGAGALLPGALLREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSAAATATAEEEPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTLAAGEFVGVLGRGGGIVEALAAVLLPAAPFLPRAAADLFLYSATRAALDRALDEGVIKPFP 1120
MFVSARWQRNA+R VAS+LFFESALSFAPP VQ+QPAL SS PL+LPA T LQRRSSSNG+S WP RAAVAGYRHR V A GDAQSSKAQT QVPPKTGA Q XXXXXXX DSDFLFEQKLESVRAAVLCGSVGA SRLLAVGAG LLPG L REALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSA EPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTLAAGEFVGVLGRGGGI+EALAAVLLPAAPFLPRAAADLFLY+A R A+DRALDEGVIKPFP
Sbjct: 1 MFVSARWQRNAVRFVASILFFESALSFAPPPVQQQPALSWSS-PLLLPA-TATLQRRSSSNGSSLWPARAAVAGYRHRQRHRGAASQQTPRLAMSSSAGRNGAAPERGDGAAANIASAAGGAFGV----ADEPGDAQSSKAQT-QVPPKTGATQTGQASRRXXXXXXX-DSDFLFEQKLESVRAAVLCGSVGATSRLLAVGAGGLLPGGLFREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSATTG-----EPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTLAAGEFVGVLGRGGGILEALAAVLLPAAPFLPRAAADLFLYTAARLAIDRALDEGVIKPFP 350
BLAST of mRNA_E_fasciculatus_S2_contig7236.15424.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP08_ECTSI) HSP 1 Score: 309 bits (792), Expect = 9.010e-98 Identity = 181/211 (85.78%), Postives = 182/211 (86.26%), Query Frame = 2
Query: 431 GDAQSSKAQTPQVPPKTGAMQAXXXXXXXXXXXXXXDSDFLFEQKLESVRAAVLCGSVGAASRLLAVGAGALLPGALLREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSAAATATAEEEPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTLAAGEFVGVLGRGGGIVEALAAVLLPAAPFLPRAAADLFLYS 1063
GDAQSS AQT QVPPKTGA Q DSDFLFEQKLESVRAAVLCGSVGAASRLLAVGAGALLPG LLREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSA EPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTLAAGEFV VL RGGGI+EALAAVLLPAAPFLPRAAADLFLYS
Sbjct: 36 GDAQSSIAQT-QVPPKTGATQTGQASRCRRQQHHH-DSDFLFEQKLESVRAAVLCGSVGAASRLLAVGAGALLPGGLLREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSATTG-----EPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTLAAGEFVRVLWRGGGILEALAAVLLPAAPFLPRAAADLFLYS 239
BLAST of mRNA_E_fasciculatus_S2_contig7236.15424.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URH4_HETAK) HSP 1 Score: 54.7 bits (130), Expect = 5.130e-5 Identity = 63/178 (35.39%), Postives = 76/178 (42.70%), Query Frame = 2
Query: 635 AGALLPGALLREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSAAATATAEEEPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTLAAGEFV-----------------GVLGRGGGIVEALAAVLLPAAP---FLPRAAADLFLYSATRAALDRALDEGVI 1108
A AL P LL +A P A + L+ L G A+GALFGL YRYVVR D + P P + GF+V LGDG V++FALTS L ++ L A FV G L G + AL L AA + R ALDRAL G I
Sbjct: 7 AAALNPSLLL---VARPASAAADLV-ALGGGAAEGALFGLLYRYVVRGDLTR--------------PDPGL-GFSVKQLGDGVVSSFALTSVLAHNQENLVKVAEVFVLSLPTAISDLTSVPEGGGALAAAGDVARALXXXXXXXXXXXXLLRDAAVAWLSFGLCREALDRALLSGAI 165
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 1959 |
| Hectar predicted targeting category | signal peptide |
| Exons | 3 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-06_007040.1 |
| Cds size | 1092 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696842387.5025585-UTR-E_fasciculatus_S2_contig7236:3154..3185 | 1696842387.5025585-UTR-E_fasciculatus_S2_contig7236:3154..3185 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig7236 3155..3185 + |
| 1696842387.5448399-UTR-E_fasciculatus_S2_contig7236:6817..7653 | 1696842387.5448399-UTR-E_fasciculatus_S2_contig7236:6817..7653 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig7236 6818..7653 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696842387.5122254-CDS-E_fasciculatus_S2_contig7236:3185..3620 | 1696842387.5122254-CDS-E_fasciculatus_S2_contig7236:3185..3620 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig7236 3186..3620 + |
| 1696842387.5235522-CDS-E_fasciculatus_S2_contig7236:5014..5310 | 1696842387.5235522-CDS-E_fasciculatus_S2_contig7236:5014..5310 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig7236 5015..5310 + |
| 1696842387.5341046-CDS-E_fasciculatus_S2_contig7236:6456..6817 | 1696842387.5341046-CDS-E_fasciculatus_S2_contig7236:6456..6817 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig7236 6457..6817 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7236.15424.1 >prot_E_fasciculatus_S2_contig7236.15424.1 ID=prot_E_fasciculatus_S2_contig7236.15424.1|Name=mRNA_E_fasciculatus_S2_contig7236.15424.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=364bp
MFVSARWQRNALRLVASVLFFESALSFAPPAVQRQPALFCSSSPLILPAA TGALQRRSSSNGASFWPGRAAVAGYRHRQRRRGAASQQTPPSLAMSLAAG RDGAAPERGDGGAAAGASSAGGGAVDVADAAADGDAQSSKAQTPQVPPKT GAMQAAQASRRRRQQQHHHDSDFLFEQKLESVRAAVLCGSVGAASRLLAV GAGALLPGALLREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSD REQSPSAAATATAEEEPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAP LTLAAGEFVGVLGRGGGIVEALAAVLLPAAPFLPRAAADLFLYSATRAAL DRALDEGVIKPFP* back to topmRNA from alignment at E_fasciculatus_S2_contig7236:3155..7653+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig7236.15424.1 ID=mRNA_E_fasciculatus_S2_contig7236.15424.1|Name=mRNA_E_fasciculatus_S2_contig7236.15424.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4499bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7236:3155..7653+ (Ectocarpus fasciculatus EfasUO2) CTGGTAGTGAGTGTGAGGCAGGTGTGGCCGGATGTTCGTCTCAGCAAGAT
GGCAGCGTAATGCCTTACGACTCGTTGCCTCGGTTCTCTTCTTCGAATCG
GCTCTGTCGTTTGCACCGCCGGCGGTTCAACGACAACCTGCTCTATTTTG
CTCGTCATCGCCGTTGATTCTACCTGCTGCTACTGGTGCTCTCCAGCGGC
GTAGCAGCAGCAATGGTGCCTCGTTCTGGCCGGGCAGGGCAGCTGTAGCA
GGATACAGACACCGCCAACGACGACGAGGGGCAGCGTCACAGCAGACCCC
GCCGTCGTTGGCTATGTCATTAGCAGCCGGACGAGATGGAGCAGCGCCGG
AGAGAGGAGATGGAGGAGCAGCAGCAGGTGCTAGTAGTGCTGGAGGCGGC
GCTGTTGATGTCGCCGATGCAGCAGCTGATGGCGATGCGCAATCTTCCAA
AGCTCAGACACCACAGGTGAACGGTTGCAAGCAGACGTTGGGTATTGCCG
GGATGCGACGTGCTTTGCAATGCCTGGACTCGACTATCTTCAAAGCAAGG
TCCGTAGTCCGGTAGCAGACGTAGTGGGCACCGACGCGCCGACACTACAT
GTAGGTCTAGTGATGGTCGCACATGAAAATGAGGGGACCGCAGGAGGGAC
AAAGCGGTACAGCAATAGGGCAATCATGCCCGCGGGTTATCGGATGGGAT
CGGCATGATGACTGCCGCGACAGAGGTTGCCCTCTACCAAAGCCTGCAGC
TGTGTCGGCGGGGCAGCGCATACTGTACCCACAACGACGTGATCAGGTGC
ACTGCTGAAGTATACAATACACATGCGGTTCCGCCGCATCCACATTAACA
TGCCCAGCAGTGGCATCAGCACTGCTGTAGCTGTAGTCTACATACCGCTC
GACAGTCGGTGCATACGTGTTGTGTATAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGTCGTGCAAAAGCCCAACACAGCAGCCTATGGGGTACGAACC
ATCCAGGAAGAAAAACATCTCAGCGGGCACAATTATTCAATTTTGGCTTG
CTCAAAATTTGCTCGTGCTACGATTACACGCCACTTGTTGTGTCGGTCCA
ACTGACAGAAGGCACACACAGCCCGCATGGATGTGTTTCCCCACGTCTAG
ATATGCCTATGCATAGAGTCCTATAAGTATGAATCAGCCATCGGAAGAGC
ACATTTAGCCGTTCGATCTATGCCCATCCCCGGTACGAAGTATTTTGTGG
CGATGCGCGTTGTTTTATGTACGTACTGACGTACATGCGGTCTCTCTCTG
ACTGACCTCAAGAGACAAAGCCAACATCCCGAAGACGCGCGTGCCGATGT
TTTGCTAAAGGTAACGGACGAGAGGTGCTAGGATATCGTTCGTATATCGC
GCGAGCGATTGTGCGTTGGCACATCCGCCGATCTTTACCTACCGCACACC
ACACAACTATAGCACACCCAGAAACGATTCCACGCGCCTCACGGAATACC
GCATCCCGTGAAAATTGTTTCAGGCAGCTCGACATGACCTCACCAGGGAT
GAACGTACGATACCACACACTCAGCACAATTCCCCACCGGGTGACCATAT
CCTTAAACCCCCGACGAACGTTTATCACCGGGTGTGTTATCTTGTGTGGC
ACAATATACGATTACACTCGATAGGTTTTGCTCGCGACTTGGTTCTTTCA
TCAAGCACCGTTTTGCTCTTTTAGAATATCAACCCCCCCCACCACACACT
GTCTTCCGCAGGCTGCCAAAAAACACCGAGAGAGCCCGANNNNNNNNNNT
TTTTTTTTCTCAACCACCGTTTTTTTTCTTTCCCCCCCCCCCCCCCCCCC
CCCTACACAGGTACCCCCCAAAACCGGCGCGATGCAAGCCGCCCAGGCCT
CGCGCCGTCGCCGCCAGCAGCAGCACCACCACGACAGCGACTTCCTGTTC
GAGCAGAAGCTGGAGAGCGTCCGCGCCGCCGTCCTGTGCGGGAGCGTCGG
GGCGGCCTCGCGCCTGCTAGCGGTGGGAGCCGGGGCCTTGCTTCCCGGGG
CGCTCTTGCGAGAGGCGCTGGCGGCGCCAGAGCCGGCGGGTTCGTCCCTC
CTGTTCGGCCTGGCGGCGGGCTTCGCGCAGGGCGCGCTGTTTGGGCTGAC
GTACCGGTGAGAGGGAAAAGCAAAGGAGAAATTAGCAGCAGCAGCAGCAG
CGGCGGCGGCGGCGGCGGCGGCAGGAGCAGGAGCAGCTTATTTTTGATGG
AACAAGCACCCCGGGACCTGTTGCTATCTAGAGAAACACATGTATATATT
TCTCTTCCCCGTGCAATGAATTTTGCTCCATTTGGCTTGCACAGCACAGC
ATCGTCCTTCGTGAATCAGTTGTTTCACTCTTTTCTTTTCTTTTTTTTTT
CGCTTATATTGTTCCCATATTTTCCCATCTATCTCCCTCCTCATTGTCCC
TGCCCGAAAAGGACATTTTTTTTACAGGAGCAACAGGTATAGACATAATC
AAATGTCGTTTGTTGGAAAACATTCGGATTGCCATGTTAGGTTCGGAGTT
CAGCTCGCCTGAGAAATGTGATTCGTTTCAGCCTGGTTGGTAGTGAAAGC
CCTAGCCATTCAGCACAAAGAGAGTCTTCCCGTGCTGTATCGCCCCGGCA
CACCTTAACTACACGGCGTCGCGGCTGACCATTCTTCGGTTTGGGCGGCA
CCAGTCGACACCTAACCGTTGACCTTGTGGAGCTTGTGCTGCACTGCTCC
GAGGAAGGGTATAGCACGTTTTTTGTTGGGGTGCGGAACGCGTGAGTGGC
GAGAGGACGATGGAAGGGGGGCGGGGCGGAGGTATTTTTTGGTTGAACAA
GCTTTAATTTGGACAGATTCCCCGGAACATAGAATTCCAGCGTCTAATAA
TAGCAGGCAAACCGTACTCAGGGCCAAAACATCCCCCAAGCCTCACACAA
AGGGCATACAAATCTTGTATACCGCAGCCTTTTCGGATTCGTGCCTTTCG
TTGCAAGAAAAGAAAAACGTCCTACATACCAACACACAAGGTCGCTCACC
CGTCACTATAAATTAATCCCGTTGTTTTTCATGCGTTGATGGGTGCGTGT
GAACTCCGCCGAAAGCCTGGGCCGGCGAAAACCCGACATATCGCTCCGTC
CCGAGATTTGAGGGGATGCGAGGCCAACGACTACGACTACGGCATGTGTT
CACCATGAGTACCCCCCCCGCGCGCCCTTCGCCATCCGTCGGAACGAAAT
CTCTTTTTTCCCCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCC
AGATACGTCGTGCGCTCGGACCGCGAACAGTCCCCGTCGGCTGCTGCTAC
CGCGACGGCGGAGGAGGAGCCACCCGTCCCGCAGATGGACGGGTTTACCG
TGGGACACCTGGGAGACGGGTGCGTGGCCGCGTTCGCCCTCACCTCCGCC
CTGGGCCAGAGCGAGGCGCCCCTCACCCTGGCGGCGGGGGAGTTCGTAGG
CGTGTTGGGACGGGGCGGGGGGATAGTTGAAGCGTTAGCGGCGGTGCTGT
TGCCCGCGGCGCCGTTCCTGCCGAGGGCAGCGGCGGACCTGTTCCTGTAC
TCGGCGACCCGCGCGGCCCTCGACCGAGCTCTCGACGAGGGCGTGATTAA
GCCCTTTCCGTAAGCGGCGGCGGGCGGGTGGCAGCAGCGTTGTGAGCGCG
TGTTTGTCGTTGCCGATGAAACCCGTTCCGTAGCGGCAGCGGCAGCAGTG
GTGTGAGCGCGCGTTGTCGTTGCCACTACCCCCCTGCCCTGCTGGTACCC
TCCCCAACAAGGTGTACTATTACGACAGCAGCTGTAGAGGTCCCTGTTTT
AAGGCCGCTATTGTCCACCGGAAGACATCGGCCTTGCGTCGGGCACCCGG
CACAATTTTTCTGCATGAAGACAACTGGAATATTCAAATCTGTTGTGCCA
AGCGATTTCAACGACCTTAAACAGGGCGACCGGCCCCTACATATGCTGCC
GTAGACCTCTGCTGCTGCCGCATCTGATTGGTCGGGTTCGGTGTGTGGTT
TGTGTTCCCTTCACCGCCGTCCCTCCTTCCGGGTGGTCGATTTTGCTTCA
ATTTTGGAAGGGTGTTTCATCGCGAGCGCTTCAGCTAATACCTCGTGTGT
TGGTGACATAGGCTGCGAATTTCCCCCCTCGTGATGCCGTCGTTGTGCTG
CTCGTGTCACCTGTTGCTGGTACCGGAACATGTACTGTACGTTTGTACCG
GTATGTTTTTTTTCTGTTAAGCGTAAAGTGGAAGTGTGGAACATGACTTG
TATGCGGGTGTGTGCTGGTCCCCTTTCCTAGCCTTCCTTCCGAAGGGAGG
GAAGCGATGCAACCATTACCATTCGTCACGTCTGCGGATGACCTCACAAG
AAGGCTGAATGGGACACTCGATTTGTTTTTCTCACTTCTCACCATACTGC
TGCTGCCGCCGGGCAGTCAACTGCGCGTACTGACCTGCTTCCAGTTTCG back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig7236:3155..7653+ >mRNA_E_fasciculatus_S2_contig7236.15424.1 ID=mRNA_E_fasciculatus_S2_contig7236.15424.1|Name=mRNA_E_fasciculatus_S2_contig7236.15424.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1092bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7236:3155..7653+ (Ectocarpus fasciculatus EfasUO2) ATGTTCGTCTCAGCAAGATGGCAGCGTAATGCCTTACGACTCGTTGCCTC GGTTCTCTTCTTCGAATCGGCTCTGTCGTTTGCACCGCCGGCGGTTCAAC GACAACCTGCTCTATTTTGCTCGTCATCGCCGTTGATTCTACCTGCTGCT ACTGGTGCTCTCCAGCGGCGTAGCAGCAGCAATGGTGCCTCGTTCTGGCC GGGCAGGGCAGCTGTAGCAGGATACAGACACCGCCAACGACGACGAGGGG CAGCGTCACAGCAGACCCCGCCGTCGTTGGCTATGTCATTAGCAGCCGGA CGAGATGGAGCAGCGCCGGAGAGAGGAGATGGAGGAGCAGCAGCAGGTGC TAGTAGTGCTGGAGGCGGCGCTGTTGATGTCGCCGATGCAGCAGCTGATG GCGATGCGCAATCTTCCAAAGCTCAGACACCACAGGTACCCCCCAAAACC GGCGCGATGCAAGCCGCCCAGGCCTCGCGCCGTCGCCGCCAGCAGCAGCA CCACCACGACAGCGACTTCCTGTTCGAGCAGAAGCTGGAGAGCGTCCGCG CCGCCGTCCTGTGCGGGAGCGTCGGGGCGGCCTCGCGCCTGCTAGCGGTG GGAGCCGGGGCCTTGCTTCCCGGGGCGCTCTTGCGAGAGGCGCTGGCGGC GCCAGAGCCGGCGGGTTCGTCCCTCCTGTTCGGCCTGGCGGCGGGCTTCG CGCAGGGCGCGCTGTTTGGGCTGACGTACCGATACGTCGTGCGCTCGGAC CGCGAACAGTCCCCGTCGGCTGCTGCTACCGCGACGGCGGAGGAGGAGCC ACCCGTCCCGCAGATGGACGGGTTTACCGTGGGACACCTGGGAGACGGGT GCGTGGCCGCGTTCGCCCTCACCTCCGCCCTGGGCCAGAGCGAGGCGCCC CTCACCCTGGCGGCGGGGGAGTTCGTAGGCGTGTTGGGACGGGGCGGGGG GATAGTTGAAGCGTTAGCGGCGGTGCTGTTGCCCGCGGCGCCGTTCCTGC CGAGGGCAGCGGCGGACCTGTTCCTGTACTCGGCGACCCGCGCGGCCCTC GACCGAGCTCTCGACGAGGGCGTGATTAAGCCCTTTCCGTAA back to top
|