mRNA_E_fasciculatus_S2_contig7236.15424.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7236.15424.1
Unique NamemRNA_E_fasciculatus_S2_contig7236.15424.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7236.15424.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWW8_9PHAE)

HSP 1 Score: 432 bits (1112), Expect = 1.910e-144
Identity = 268/363 (73.83%), Postives = 276/363 (76.03%), Query Frame = 2
Query:   32 MFVSARWQRNALRLVASVLFFESALSFAPPAVQRQPALFCSSSPLILPAATGALQRRSSSNGASFWPGRAAVAGYRHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDVADAAADGDAQSSKAQTPQVPPKTGAMQAXXXXXXXXXXXXXXDSDFLFEQKLESVRAAVLCGSVGAASRLLAVGAGALLPGALLREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSAAATATAEEEPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTLAAGEFVGVLGRGGGIVEALAAVLLPAAPFLPRAAADLFLYSATRAALDRALDEGVIKPFP 1120
            MFVSARWQRNA+R VAS+LFFESALSFAPP VQ+QPAL  SS PL+LPA T  LQRRSSSNG+S WP RAAVAGYRHR                                              V    A   GDAQSSKAQT QVPPKTGA Q       XXXXXXX DSDFLFEQKLESVRAAVLCGSVGA SRLLAVGAG LLPG L REALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSA        EPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTLAAGEFVGVLGRGGGI+EALAAVLLPAAPFLPRAAADLFLY+A R A+DRALDEGVIKPFP
Sbjct:    1 MFVSARWQRNAVRFVASILFFESALSFAPPPVQQQPALSWSS-PLLLPA-TATLQRRSSSNGSSLWPARAAVAGYRHRQRHRGAASQQTPRLAMSSSAGRNGAAPERGDGAAANIASAAGGAFGV----ADEPGDAQSSKAQT-QVPPKTGATQTGQASRRXXXXXXX-DSDFLFEQKLESVRAAVLCGSVGATSRLLAVGAGGLLPGGLFREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSATTG-----EPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTLAAGEFVGVLGRGGGILEALAAVLLPAAPFLPRAAADLFLYTAARLAIDRALDEGVIKPFP 350          
BLAST of mRNA_E_fasciculatus_S2_contig7236.15424.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP08_ECTSI)

HSP 1 Score: 309 bits (792), Expect = 9.010e-98
Identity = 181/211 (85.78%), Postives = 182/211 (86.26%), Query Frame = 2
Query:  431 GDAQSSKAQTPQVPPKTGAMQAXXXXXXXXXXXXXXDSDFLFEQKLESVRAAVLCGSVGAASRLLAVGAGALLPGALLREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSAAATATAEEEPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTLAAGEFVGVLGRGGGIVEALAAVLLPAAPFLPRAAADLFLYS 1063
            GDAQSS AQT QVPPKTGA Q               DSDFLFEQKLESVRAAVLCGSVGAASRLLAVGAGALLPG LLREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSA        EPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTLAAGEFV VL RGGGI+EALAAVLLPAAPFLPRAAADLFLYS
Sbjct:   36 GDAQSSIAQT-QVPPKTGATQTGQASRCRRQQHHH-DSDFLFEQKLESVRAAVLCGSVGAASRLLAVGAGALLPGGLLREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSATTG-----EPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTLAAGEFVRVLWRGGGILEALAAVLLPAAPFLPRAAADLFLYS 239          
BLAST of mRNA_E_fasciculatus_S2_contig7236.15424.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URH4_HETAK)

HSP 1 Score: 54.7 bits (130), Expect = 5.130e-5
Identity = 63/178 (35.39%), Postives = 76/178 (42.70%), Query Frame = 2
Query:  635 AGALLPGALLREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSDREQSPSAAATATAEEEPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTLAAGEFV-----------------GVLGRGGGIVEALAAVLLPAAP---FLPRAAADLFLYSATRAALDRALDEGVI 1108
            A AL P  LL   +A P  A + L+  L  G A+GALFGL YRYVVR D  +              P P + GF+V  LGDG V++FALTS L  ++  L   A  FV                 G L   G +  AL             L  AA     +   R ALDRAL  G I
Sbjct:    7 AAALNPSLLL---VARPASAAADLV-ALGGGAAEGALFGLLYRYVVRGDLTR--------------PDPGL-GFSVKQLGDGVVSSFALTSVLAHNQENLVKVAEVFVLSLPTAISDLTSVPEGGGALAAAGDVARALXXXXXXXXXXXXLLRDAAVAWLSFGLCREALDRALLSGAI 165          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7236.15424.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized1.910e-14473.83protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized9.010e-9885.78protein (Fragment) n=1 Tax=Ectocarpus siliculosus ... [more]
Hypothetical5.130e-535.39protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7236contigE_fasciculatus_S2_contig7236:3155..7653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1959
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_007040.1
Cds size1092
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842387.5025585-UTR-E_fasciculatus_S2_contig7236:3154..31851696842387.5025585-UTR-E_fasciculatus_S2_contig7236:3154..3185Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7236 3155..3185 +
1696842387.5448399-UTR-E_fasciculatus_S2_contig7236:6817..76531696842387.5448399-UTR-E_fasciculatus_S2_contig7236:6817..7653Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7236 6818..7653 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842387.5122254-CDS-E_fasciculatus_S2_contig7236:3185..36201696842387.5122254-CDS-E_fasciculatus_S2_contig7236:3185..3620Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7236 3186..3620 +
1696842387.5235522-CDS-E_fasciculatus_S2_contig7236:5014..53101696842387.5235522-CDS-E_fasciculatus_S2_contig7236:5014..5310Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7236 5015..5310 +
1696842387.5341046-CDS-E_fasciculatus_S2_contig7236:6456..68171696842387.5341046-CDS-E_fasciculatus_S2_contig7236:6456..6817Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7236 6457..6817 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7236.15424.1prot_E_fasciculatus_S2_contig7236.15424.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7236 3186..6817 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7236.15424.1

>prot_E_fasciculatus_S2_contig7236.15424.1 ID=prot_E_fasciculatus_S2_contig7236.15424.1|Name=mRNA_E_fasciculatus_S2_contig7236.15424.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=364bp
MFVSARWQRNALRLVASVLFFESALSFAPPAVQRQPALFCSSSPLILPAA
TGALQRRSSSNGASFWPGRAAVAGYRHRQRRRGAASQQTPPSLAMSLAAG
RDGAAPERGDGGAAAGASSAGGGAVDVADAAADGDAQSSKAQTPQVPPKT
GAMQAAQASRRRRQQQHHHDSDFLFEQKLESVRAAVLCGSVGAASRLLAV
GAGALLPGALLREALAAPEPAGSSLLFGLAAGFAQGALFGLTYRYVVRSD
REQSPSAAATATAEEEPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAP
LTLAAGEFVGVLGRGGGIVEALAAVLLPAAPFLPRAAADLFLYSATRAAL
DRALDEGVIKPFP*
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mRNA from alignment at E_fasciculatus_S2_contig7236:3155..7653+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7236.15424.1 ID=mRNA_E_fasciculatus_S2_contig7236.15424.1|Name=mRNA_E_fasciculatus_S2_contig7236.15424.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4499bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7236:3155..7653+ (Ectocarpus fasciculatus EfasUO2)
CTGGTAGTGAGTGTGAGGCAGGTGTGGCCGGATGTTCGTCTCAGCAAGAT GGCAGCGTAATGCCTTACGACTCGTTGCCTCGGTTCTCTTCTTCGAATCG GCTCTGTCGTTTGCACCGCCGGCGGTTCAACGACAACCTGCTCTATTTTG CTCGTCATCGCCGTTGATTCTACCTGCTGCTACTGGTGCTCTCCAGCGGC GTAGCAGCAGCAATGGTGCCTCGTTCTGGCCGGGCAGGGCAGCTGTAGCA GGATACAGACACCGCCAACGACGACGAGGGGCAGCGTCACAGCAGACCCC GCCGTCGTTGGCTATGTCATTAGCAGCCGGACGAGATGGAGCAGCGCCGG AGAGAGGAGATGGAGGAGCAGCAGCAGGTGCTAGTAGTGCTGGAGGCGGC GCTGTTGATGTCGCCGATGCAGCAGCTGATGGCGATGCGCAATCTTCCAA AGCTCAGACACCACAGGTGAACGGTTGCAAGCAGACGTTGGGTATTGCCG GGATGCGACGTGCTTTGCAATGCCTGGACTCGACTATCTTCAAAGCAAGG TCCGTAGTCCGGTAGCAGACGTAGTGGGCACCGACGCGCCGACACTACAT GTAGGTCTAGTGATGGTCGCACATGAAAATGAGGGGACCGCAGGAGGGAC AAAGCGGTACAGCAATAGGGCAATCATGCCCGCGGGTTATCGGATGGGAT CGGCATGATGACTGCCGCGACAGAGGTTGCCCTCTACCAAAGCCTGCAGC TGTGTCGGCGGGGCAGCGCATACTGTACCCACAACGACGTGATCAGGTGC ACTGCTGAAGTATACAATACACATGCGGTTCCGCCGCATCCACATTAACA TGCCCAGCAGTGGCATCAGCACTGCTGTAGCTGTAGTCTACATACCGCTC GACAGTCGGTGCATACGTGTTGTGTATAGCAGCAGCAGCAGCAGCAGCAG CAGCAGCAGTCGTGCAAAAGCCCAACACAGCAGCCTATGGGGTACGAACC ATCCAGGAAGAAAAACATCTCAGCGGGCACAATTATTCAATTTTGGCTTG CTCAAAATTTGCTCGTGCTACGATTACACGCCACTTGTTGTGTCGGTCCA ACTGACAGAAGGCACACACAGCCCGCATGGATGTGTTTCCCCACGTCTAG ATATGCCTATGCATAGAGTCCTATAAGTATGAATCAGCCATCGGAAGAGC ACATTTAGCCGTTCGATCTATGCCCATCCCCGGTACGAAGTATTTTGTGG CGATGCGCGTTGTTTTATGTACGTACTGACGTACATGCGGTCTCTCTCTG ACTGACCTCAAGAGACAAAGCCAACATCCCGAAGACGCGCGTGCCGATGT TTTGCTAAAGGTAACGGACGAGAGGTGCTAGGATATCGTTCGTATATCGC GCGAGCGATTGTGCGTTGGCACATCCGCCGATCTTTACCTACCGCACACC ACACAACTATAGCACACCCAGAAACGATTCCACGCGCCTCACGGAATACC GCATCCCGTGAAAATTGTTTCAGGCAGCTCGACATGACCTCACCAGGGAT GAACGTACGATACCACACACTCAGCACAATTCCCCACCGGGTGACCATAT CCTTAAACCCCCGACGAACGTTTATCACCGGGTGTGTTATCTTGTGTGGC ACAATATACGATTACACTCGATAGGTTTTGCTCGCGACTTGGTTCTTTCA TCAAGCACCGTTTTGCTCTTTTAGAATATCAACCCCCCCCACCACACACT GTCTTCCGCAGGCTGCCAAAAAACACCGAGAGAGCCCGANNNNNNNNNNT TTTTTTTTCTCAACCACCGTTTTTTTTCTTTCCCCCCCCCCCCCCCCCCC CCCTACACAGGTACCCCCCAAAACCGGCGCGATGCAAGCCGCCCAGGCCT CGCGCCGTCGCCGCCAGCAGCAGCACCACCACGACAGCGACTTCCTGTTC GAGCAGAAGCTGGAGAGCGTCCGCGCCGCCGTCCTGTGCGGGAGCGTCGG GGCGGCCTCGCGCCTGCTAGCGGTGGGAGCCGGGGCCTTGCTTCCCGGGG CGCTCTTGCGAGAGGCGCTGGCGGCGCCAGAGCCGGCGGGTTCGTCCCTC CTGTTCGGCCTGGCGGCGGGCTTCGCGCAGGGCGCGCTGTTTGGGCTGAC GTACCGGTGAGAGGGAAAAGCAAAGGAGAAATTAGCAGCAGCAGCAGCAG CGGCGGCGGCGGCGGCGGCGGCAGGAGCAGGAGCAGCTTATTTTTGATGG AACAAGCACCCCGGGACCTGTTGCTATCTAGAGAAACACATGTATATATT TCTCTTCCCCGTGCAATGAATTTTGCTCCATTTGGCTTGCACAGCACAGC ATCGTCCTTCGTGAATCAGTTGTTTCACTCTTTTCTTTTCTTTTTTTTTT CGCTTATATTGTTCCCATATTTTCCCATCTATCTCCCTCCTCATTGTCCC TGCCCGAAAAGGACATTTTTTTTACAGGAGCAACAGGTATAGACATAATC AAATGTCGTTTGTTGGAAAACATTCGGATTGCCATGTTAGGTTCGGAGTT CAGCTCGCCTGAGAAATGTGATTCGTTTCAGCCTGGTTGGTAGTGAAAGC CCTAGCCATTCAGCACAAAGAGAGTCTTCCCGTGCTGTATCGCCCCGGCA CACCTTAACTACACGGCGTCGCGGCTGACCATTCTTCGGTTTGGGCGGCA CCAGTCGACACCTAACCGTTGACCTTGTGGAGCTTGTGCTGCACTGCTCC GAGGAAGGGTATAGCACGTTTTTTGTTGGGGTGCGGAACGCGTGAGTGGC GAGAGGACGATGGAAGGGGGGCGGGGCGGAGGTATTTTTTGGTTGAACAA GCTTTAATTTGGACAGATTCCCCGGAACATAGAATTCCAGCGTCTAATAA TAGCAGGCAAACCGTACTCAGGGCCAAAACATCCCCCAAGCCTCACACAA AGGGCATACAAATCTTGTATACCGCAGCCTTTTCGGATTCGTGCCTTTCG TTGCAAGAAAAGAAAAACGTCCTACATACCAACACACAAGGTCGCTCACC CGTCACTATAAATTAATCCCGTTGTTTTTCATGCGTTGATGGGTGCGTGT GAACTCCGCCGAAAGCCTGGGCCGGCGAAAACCCGACATATCGCTCCGTC CCGAGATTTGAGGGGATGCGAGGCCAACGACTACGACTACGGCATGTGTT CACCATGAGTACCCCCCCCGCGCGCCCTTCGCCATCCGTCGGAACGAAAT CTCTTTTTTCCCCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCC AGATACGTCGTGCGCTCGGACCGCGAACAGTCCCCGTCGGCTGCTGCTAC CGCGACGGCGGAGGAGGAGCCACCCGTCCCGCAGATGGACGGGTTTACCG TGGGACACCTGGGAGACGGGTGCGTGGCCGCGTTCGCCCTCACCTCCGCC CTGGGCCAGAGCGAGGCGCCCCTCACCCTGGCGGCGGGGGAGTTCGTAGG CGTGTTGGGACGGGGCGGGGGGATAGTTGAAGCGTTAGCGGCGGTGCTGT TGCCCGCGGCGCCGTTCCTGCCGAGGGCAGCGGCGGACCTGTTCCTGTAC TCGGCGACCCGCGCGGCCCTCGACCGAGCTCTCGACGAGGGCGTGATTAA GCCCTTTCCGTAAGCGGCGGCGGGCGGGTGGCAGCAGCGTTGTGAGCGCG TGTTTGTCGTTGCCGATGAAACCCGTTCCGTAGCGGCAGCGGCAGCAGTG GTGTGAGCGCGCGTTGTCGTTGCCACTACCCCCCTGCCCTGCTGGTACCC TCCCCAACAAGGTGTACTATTACGACAGCAGCTGTAGAGGTCCCTGTTTT AAGGCCGCTATTGTCCACCGGAAGACATCGGCCTTGCGTCGGGCACCCGG CACAATTTTTCTGCATGAAGACAACTGGAATATTCAAATCTGTTGTGCCA AGCGATTTCAACGACCTTAAACAGGGCGACCGGCCCCTACATATGCTGCC GTAGACCTCTGCTGCTGCCGCATCTGATTGGTCGGGTTCGGTGTGTGGTT TGTGTTCCCTTCACCGCCGTCCCTCCTTCCGGGTGGTCGATTTTGCTTCA ATTTTGGAAGGGTGTTTCATCGCGAGCGCTTCAGCTAATACCTCGTGTGT TGGTGACATAGGCTGCGAATTTCCCCCCTCGTGATGCCGTCGTTGTGCTG CTCGTGTCACCTGTTGCTGGTACCGGAACATGTACTGTACGTTTGTACCG GTATGTTTTTTTTCTGTTAAGCGTAAAGTGGAAGTGTGGAACATGACTTG TATGCGGGTGTGTGCTGGTCCCCTTTCCTAGCCTTCCTTCCGAAGGGAGG GAAGCGATGCAACCATTACCATTCGTCACGTCTGCGGATGACCTCACAAG AAGGCTGAATGGGACACTCGATTTGTTTTTCTCACTTCTCACCATACTGC TGCTGCCGCCGGGCAGTCAACTGCGCGTACTGACCTGCTTCCAGTTTCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7236:3155..7653+

>mRNA_E_fasciculatus_S2_contig7236.15424.1 ID=mRNA_E_fasciculatus_S2_contig7236.15424.1|Name=mRNA_E_fasciculatus_S2_contig7236.15424.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1092bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7236:3155..7653+ (Ectocarpus fasciculatus EfasUO2)
ATGTTCGTCTCAGCAAGATGGCAGCGTAATGCCTTACGACTCGTTGCCTC
GGTTCTCTTCTTCGAATCGGCTCTGTCGTTTGCACCGCCGGCGGTTCAAC
GACAACCTGCTCTATTTTGCTCGTCATCGCCGTTGATTCTACCTGCTGCT
ACTGGTGCTCTCCAGCGGCGTAGCAGCAGCAATGGTGCCTCGTTCTGGCC
GGGCAGGGCAGCTGTAGCAGGATACAGACACCGCCAACGACGACGAGGGG
CAGCGTCACAGCAGACCCCGCCGTCGTTGGCTATGTCATTAGCAGCCGGA
CGAGATGGAGCAGCGCCGGAGAGAGGAGATGGAGGAGCAGCAGCAGGTGC
TAGTAGTGCTGGAGGCGGCGCTGTTGATGTCGCCGATGCAGCAGCTGATG
GCGATGCGCAATCTTCCAAAGCTCAGACACCACAGGTACCCCCCAAAACC
GGCGCGATGCAAGCCGCCCAGGCCTCGCGCCGTCGCCGCCAGCAGCAGCA
CCACCACGACAGCGACTTCCTGTTCGAGCAGAAGCTGGAGAGCGTCCGCG
CCGCCGTCCTGTGCGGGAGCGTCGGGGCGGCCTCGCGCCTGCTAGCGGTG
GGAGCCGGGGCCTTGCTTCCCGGGGCGCTCTTGCGAGAGGCGCTGGCGGC
GCCAGAGCCGGCGGGTTCGTCCCTCCTGTTCGGCCTGGCGGCGGGCTTCG
CGCAGGGCGCGCTGTTTGGGCTGACGTACCGATACGTCGTGCGCTCGGAC
CGCGAACAGTCCCCGTCGGCTGCTGCTACCGCGACGGCGGAGGAGGAGCC
ACCCGTCCCGCAGATGGACGGGTTTACCGTGGGACACCTGGGAGACGGGT
GCGTGGCCGCGTTCGCCCTCACCTCCGCCCTGGGCCAGAGCGAGGCGCCC
CTCACCCTGGCGGCGGGGGAGTTCGTAGGCGTGTTGGGACGGGGCGGGGG
GATAGTTGAAGCGTTAGCGGCGGTGCTGTTGCCCGCGGCGCCGTTCCTGC
CGAGGGCAGCGGCGGACCTGTTCCTGTACTCGGCGACCCGCGCGGCCCTC
GACCGAGCTCTCGACGAGGGCGTGATTAAGCCCTTTCCGTAA
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