mRNA_E_fasciculatus_S2_contig723.15414.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig723.15414.1
Unique NamemRNA_E_fasciculatus_S2_contig723.15414.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig723.15414.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig723contigE_fasciculatus_S2_contig723:3579..5492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size218
Hectar predicted targeting categoryother localisation
Exons3
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842386.4601326-CDS-E_fasciculatus_S2_contig723:3580..36101696842386.4601326-CDS-E_fasciculatus_S2_contig723:3580..3610Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig723 3581..3610 -
1696842386.4706123-CDS-E_fasciculatus_S2_contig723:4830..49001696842386.4706123-CDS-E_fasciculatus_S2_contig723:4830..4900Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig723 4831..4900 -
1696842386.4837816-CDS-E_fasciculatus_S2_contig723:5376..54921696842386.4837816-CDS-E_fasciculatus_S2_contig723:5376..5492Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig723 5377..5492 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig723.15414.1prot_E_fasciculatus_S2_contig723.15414.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig723 3581..5492 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig723.15414.1

>prot_E_fasciculatus_S2_contig723.15414.1 ID=prot_E_fasciculatus_S2_contig723.15414.1|Name=mRNA_E_fasciculatus_S2_contig723.15414.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=72bp
QVKQGEWSDVIVPASKIPRRETVVETSVLRMNDPSYEEWYEPAERLWHRI
VFPAKRPSNREQVLLLERWMTM
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mRNA from alignment at E_fasciculatus_S2_contig723:3579..5492-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig723.15414.1 ID=mRNA_E_fasciculatus_S2_contig723.15414.1|Name=mRNA_E_fasciculatus_S2_contig723.15414.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1914bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig723:3579..5492- (Ectocarpus fasciculatus EfasUO2)
CAGGTGAAGCAAGGGGAGTGGAGTGACGTCATCGTGCCTGCCTCCAAAAT
TCCCCGCAGGGAAACCGTGGTCGAGACCTCGGTGCTCAGGATGAACGACC
CTTCCTACGAAGAGTGGTGGGTGTTGCATCAGGGTGTAGGATCGGTTGGG
TTGGATTGGATTGGTAGGCGCGGGAGGGGATGCGTGAAGTCGGACGGGTT
TGCATTGTTGTTGTTGTTGTTGTTGTTGTTGTCACCCATTCGTGTGCCAT
CACAAGTAGACTAGTCTTCTTCTTACAAGAAAGTAGCACAGCCTGTACGA
ATCGAATGCCCGTGGCCACAGGCTTGCCAAACACACATGAGGAAACAATT
TCAGGGTGGACGCACAGAACGTCTTTCCTCACCGCAAAACGAAGTCAAGC
CCGAGTCAAGCCCGTAACAAGGCCTTGAAAGGTACCGAACCAAGAGGAAC
AAGGAGAGCACCACCACATGTACGAGCCTCTTAAATTGTGGTTTCGCAAG
CTCTTCGGACTTCGAAAGATTTGGGAATCTCGCGGTCATTTTCTGTTGCA
CTGTGCACGCGTGCAAAAACCGAAAACGCACCGACTACGTAGGTACGAGC
CTGCTGAGCGGCTGTGGCACCGAATCGTGTTCCCCGCAAAGCGTCCAAGT
AATCGCGAGCAGGTGCGAGCCCTTCCGTGTACCAGCTGCATGAAAGGGTG
GGGGTGGGGGTAATTTTCAAACGGGAACTAGCTTTCAACGGGTTATCCCC
TCGGGTCTTGCGGACTCTTGTTTCAGCCCTCGCTGCTCCCCCCCTTCTAT
TTGGTTTGATGAGAGCGTGGAAGGGGGAGGTCCTGGAAGGACAACATCAT
TGTCTTACATGCATAGACTACGACGATGACGACGACTACGGCAAAAACGA
CAACAACACCAACAACAACACTAACATAAGCCACAAGCAGGTGCTGAGAC
CCCACTGGTTTCAAGATCATTCTCGTTTCAGTTGAGTATGTGCACGAAGT
GTGGCCAGCTTCATCTTCTTTTCTTGCCTCCAAATTCACTCTAATGTTTC
TGAGACCTTGCATCCAATCCGAAATCGACTACGGAAGCGACTTCTCTTCC
CCCGTCCTACTTCAATCTCCCATTTGTAGACGACGATATCTCTTCCTTCC
GCTCTCTGTTGACTCAGCTTCATTCCCCATTCGAATACCAAGAACTTGTA
CCCCATTCCCTGTCCACGTTGGGGCATCCCTAATGAAGTACTGATACATC
CTCTGCTCCCAAGTACTTTAATCCCCTATCTAACTCTACTGTGTTCAGTA
GGTACTGTAGGATGTGTGGCTGTTCGATGCGTACAAAACTGGGGGTTGTG
CAGGACTGGCTCTCCCGTGCCATACCTGCACCCCGCCTGTGTAATATCTA
CCACTCGGACCTAACCCGCAACAGCGTCACCATTACCACCCCATTTTTCA
TCGTCATGCTTTCTGCCTTGAACCCACCCAGTAAATGGTTGCTATCAGGC
GTTTTCACGGACGTATCATACACGGGATATGGCTGTGTAGCAGCGGCTTT
CTACGATGATAATGGGGTGGTAATGGTGACGCTGTTGCGGGCTAGGTCCG
AGTGGTAGATATGACACAGGCGGAGTGCAGGTATGGCACGGGAGACCCAG
TCTTGCACAACCCCTAGTTTTGTACGCATCGAACAGCCACACAAACGGCG
GTCTGCAAATACCTACTGGTTACAGTAGAGCTAGATGCTATTTACTAGGG
ACAAGAGTAGAGAAGTATCCTCCCGGCACATGACTCCCTCGTCGAAGCAT
CGTTCCGAAAACGAGGCAAATTGTTGGCCTGTCACCACGCACCACACCTT
GATGATTACGCCCCCATCCCGCTGGCCCACAGGTGTTACTTTTGGAGCGC
TGGATGACAATGGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig723:3579..5492-

>mRNA_E_fasciculatus_S2_contig723.15414.1 ID=mRNA_E_fasciculatus_S2_contig723.15414.1|Name=mRNA_E_fasciculatus_S2_contig723.15414.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=216bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig723:3579..5492- (Ectocarpus fasciculatus EfasUO2)
CAGGTGAAGCAAGGGGAGTGGAGTGACGTCATCGTGCCTGCCTCCAAAAT
TCCCCGCAGGGAAACCGTGGTCGAGACCTCGGTGCTCAGGATGAACGACC
CTTCCTACGAAGAGTGGTACGAGCCTGCTGAGCGGCTGTGGCACCGAATC
GTGTTCCCCGCAAAGCGTCCAAGTAATCGCGAGCAGGTGTTACTTTTGGA
GCGCTGGATGACAATG
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