mRNA_E_fasciculatus_S2_contig723.15413.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig723.15413.1
Unique NamemRNA_E_fasciculatus_S2_contig723.15413.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig723.15413.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR4_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 1.770e-54
Identity = 97/100 (97.00%), Postives = 99/100 (99.00%), Query Frame = 1 
Query:    1 QHCAERGRLLDRIWRSLNELFEFVLWEMSRTVARCEERLEVMNAVVEQERADRESRETMHKNELQLVEELVNGRWSKKVRQLKDQEVRYGSIVAENERTV 300
            QHCAERGRLLDRIWRSLNELFEFVLWEMSRTVARCEERLEVMNAVVEQERADRESRET+HKNELQL EEL+NGRWSKKVRQLKDQEVRYGSIVAENERTV
Sbjct:  165 QHCAERGRLLDRIWRSLNELFEFVLWEMSRTVARCEERLEVMNAVVEQERADRESRETIHKNELQLTEELINGRWSKKVRQLKDQEVRYGSIVAENERTV 264
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig723.15413.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z723_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.980e-17
Identity = 44/96 (45.83%), Postives = 66/96 (68.75%), Query Frame = 1 
Query:    4 HCAERGRLLDRIWRSLNELFEFVLWEMSRTVARCEERLEVMNAVVEQERADRESRETMHKNELQLVEELVNGRWSKKVRQLKDQEVRYGSIVAENE 291
            HCAERGRLLD+IWRSLN+LFE+VL EMS  +A  + RL  ++  +E ERA+R +R+  H ++L+  +E ++ +WS+ VR LK     + +   +NE
Sbjct:  296 HCAERGRLLDKIWRSLNDLFEYVLREMSTALADSDGRLTDLSEALEAERAERRARDAQHAHDLRTTKEELSHKWSRVVRDLKGAAAGHAARAKQNE 391
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig723.15413.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.770e-5497.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.980e-1745.83protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig723contigE_fasciculatus_S2_contig723:695..2205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size300
Hectar predicted targeting categoryother localisation
Exons3
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842386.5111117-CDS-E_fasciculatus_S2_contig723:694..7731696842386.5111117-CDS-E_fasciculatus_S2_contig723:694..773Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig723 695..773 -
1696842386.5211017-CDS-E_fasciculatus_S2_contig723:1460..15801696842386.5211017-CDS-E_fasciculatus_S2_contig723:1460..1580Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig723 1461..1580 -
1696842386.5307631-CDS-E_fasciculatus_S2_contig723:2104..22051696842386.5307631-CDS-E_fasciculatus_S2_contig723:2104..2205Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig723 2105..2205 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig723.15413.1prot_E_fasciculatus_S2_contig723.15413.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig723 695..2205 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig723.15413.1

>prot_E_fasciculatus_S2_contig723.15413.1 ID=prot_E_fasciculatus_S2_contig723.15413.1|Name=mRNA_E_fasciculatus_S2_contig723.15413.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=100bp
QHCAERGRLLDRIWRSLNELFEFVLWEMSRTVARCEERLEVMNAVVEQER
ADRESRETMHKNELQLVEELVNGRWSKKVRQLKDQEVRYGSIVAENERTV
back to top

mRNA from alignment at E_fasciculatus_S2_contig723:695..2205-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig723.15413.1 ID=mRNA_E_fasciculatus_S2_contig723.15413.1|Name=mRNA_E_fasciculatus_S2_contig723.15413.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1511bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig723:695..2205- (Ectocarpus fasciculatus EfasUO2)
CAGCACTGTGCGGAGAGAGGGCGGCTGCTCGATCGAATCTGGCGGTCTCT
CAACGAGCTCTTTGAGTTCGTGCTGTGGGAGATGTCGCGCACCGTCGCCA
GGTATCCAAAAGTAGATGTTATTTTGGCAGTGTTACGTGGTTCTCCGTGT
TTGCTGCCACAGCTGCTGGAATGGGACTGACTTTTAGTCATGGTGGCGTT
AGTGTTGGAATTGTGTATTGCCGTTGTGGCATTGTTATTGTTGTTGTTGT
TGTCGGTGGTGTTTTTGTCTATTGTCGAGGCGCCCCAGCGCTCCGTTCTG
GGCATACCATGTGAGCGCGATAGAGATCCCTATGGCATGAAGCACGGTGG
ATGGCGAAAGAGAGTGTTTCTTAGCTCGAGGACGACTACGCAGCGCTGTG
GTTCGACGGTTGACCGTAAGGACAACATGTGGACCGGGCGATCGTCAATT
GACAAATAGGCATGACGAGATGGACAAAAACATATTCCGAGTGTGTTCCC
AGAGAAAGAGGAGCGGAAGAATATATTGCTTGTGTCGGTCGACCCACGGG
TGCGTGTTTGGTATCGTTGGCCTGGCCGCTTGAACGTTGGGTCTTATTCA
CCGGCGCCGAACAACAATATCGCAGGTGCGAGGAACGGCTAGAGGTCATG
AACGCGGTCGTCGAGCAAGAGCGAGCCGACAGAGAGAGCCGAGAAACGAT
GCACAAGAACGAGCTCCAGCTAGTGGAGGAGCTAGTCAACGGCAGGCAAG
ACATCATGCGTGGTTAATGGTTCGTGAGCGCCTGTTATTTTTAGTGCACG
GCTTGCACCTGGTCAACGAAGACAAATCTATCACAGCCTAATAAGTTCGA
CATTATAATTCAGGCCCGTGCCAAGCTAATGGTGAAGGGGCGAGGGTCGC
TTACAACGGCTCTGGAGTCTTCGATCACACATCATGATTGAAGCAGGGAT
GAGGTTTTCCCCCAAATATTTAAGCCCGGAATAAACTCAAAGGTTTACCA
TATTCCGACCAATTTTGGCTCTTGGAGGCTGGGGAGATTCTGACAAGAAC
TGCATACAATTACCTGCATATCGGTTCTGTAACTGGTACCTAAACGGTTT
TGAGAGGGCGAGAGACAGAAAGAGAGACAAACAGACAGAGAGAGAGAGAG
TAGGTTAGGTGTCGGGTCGTTGTTGGTAGCCGGAGTTTTATCGTACCACA
CGCGTATGTCTCGGTGTGCGGGAGAGCGCACGCAATGGGTTTGTTACCGT
TGTTGTTGCCGTCGATGTTGTCGGTGATACTACGCGTCCGTGTCAAAGGC
TTCCCAGTGGATCGCACAGCACCAAGGCTTCAGGAAGGTCCGAAACAAAC
ACCAAAATGAATAGAACACGGGTGCGTTCGCGTCGCTCTTGGTCTGCGTG
TGTGAATACACCACATTCTCTCCCTGCACCAGATGGTCTAAGAAGGTTCG
GCAGCTCAAGGACCAAGAGGTTCGCTACGGCAGCATCGTCGCCGAAAATG
AACGCACGGTG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig723:695..2205-

>mRNA_E_fasciculatus_S2_contig723.15413.1 ID=mRNA_E_fasciculatus_S2_contig723.15413.1|Name=mRNA_E_fasciculatus_S2_contig723.15413.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=300bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig723:695..2205- (Ectocarpus fasciculatus EfasUO2)
CAGCACTGTGCGGAGAGAGGGCGGCTGCTCGATCGAATCTGGCGGTCTCT
CAACGAGCTCTTTGAGTTCGTGCTGTGGGAGATGTCGCGCACCGTCGCCA
GGTGCGAGGAACGGCTAGAGGTCATGAACGCGGTCGTCGAGCAAGAGCGA
GCCGACAGAGAGAGCCGAGAAACGATGCACAAGAACGAGCTCCAGCTAGT
GGAGGAGCTAGTCAACGGCAGATGGTCTAAGAAGGTTCGGCAGCTCAAGG
ACCAAGAGGTTCGCTACGGCAGCATCGTCGCCGAAAATGAACGCACGGTG
back to top