mRNA_E_fasciculatus_S2_contig7229.15412.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7229.15412.1
Unique NamemRNA_E_fasciculatus_S2_contig7229.15412.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7229.15412.1 vs.
Match: uncharacterized (protein LOC110990892 n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B8A2S2_ACAPL)

HSP 1 Score: 134 bits (338), Expect = 2.400e-32
Identity = 101/327 (30.89%), Postives = 149/327 (45.57%), Query Frame = 3
Query:  183 SSQGAKSLCGLPGFVCLQKLYAAINTEGEADNMVFYDSP--------------QPGPYSAPRKSTFRGINGLFFCLVVMRTGMTLVVASMLFGVSPQTGGRAFTTWVKYLRGKLRPWLRLPEVDEVAAKAPANFKRKQMEKVVVVLDATEIETVRVWHTNLAFYLYSTYKHKPTGKVLIGVTPSGVICYISSMYGGRMSDTELVARSGVISELVEKGFGSRTAAENSGGGMGGYMVMADRGFNGIAMQLYEAGLGYVAPP--ATREHELQFKEVDAEHTRDVANLRIHVERAIGALKQWKMCENKFDSSQMDVMPLVFEVCGALVNM 1115
            S +  K   GLP +   Q L+  +  +  A NM +Y                 +PGP     K +    N     L+ +R  +     +  FGVS  T  +  +TWV +L  +L+P +  P  +E+    P  F  K    V  ++D TEI+  R         +YS YK +PT K L+G+TP+G I +IS   GG  SD +LV  + +I +L                     ++MADRGFN I   L    +  + PP   T     QF E +   T+ VAN RIHVERAIG LK++ + +     + +D+M  V  VC A+VN+
Sbjct:    7 SDELVKVYTGLPNYALFQWLFEEV--KHHASNMQYYKGKVSQTDKKYQKNNLEKPGP-----KRSLALENEFLMTLMKLRLNLREEDLAFRFGVSQSTVSQVISTWVPFLDKELQPLIYWPSEEEILKYYPQCF-HKYKGTVRCIIDCTEIQIDRPSLAASNAQVYSQYKSRPTLKCLVGITPAGTISFISKPTGGNTSDKKLVKMTNIIEKLEPND-----------------ILMADRGFN-IQELLLHKSVKLIIPPFMRTTSSSSQFTESEDTRTKTVANARIHVERAIGRLKEFAILKGPIPLTMVDLMESVLVVCSAIVNL 307          
BLAST of mRNA_E_fasciculatus_S2_contig7229.15412.1 vs.
Match: uncharacterized (protein LOC117315841 n=2 Tax=Pecten maximus TaxID=6579 RepID=UPI0014587C5D)

HSP 1 Score: 134 bits (338), Expect = 9.810e-31
Identity = 83/263 (31.56%), Postives = 127/263 (48.29%), Query Frame = 3
Query:  348 NGLFFCLVVMRTGMTLVVASMLFGVSPQTGGRAFTTWVKYLRGKLRPWLRLPEVDEVAAKAPANFKRKQMEKVVVVLDATEIETVRVWHTNLAFYLYSTYKHKPTGKVLIGVTPSGVICYISSMYGGRMSDTELVARSGVISELVEKGFGSRTAAENSGGGMGGYMVMADRGFNGIAMQLYEAGLGYVAPPATREHELQFKEVDAEHTRDVANLRIHVERAIGALKQWKMCENKFDSSQMDVMPLVFEVCGALVNMLNEPFVS 1136
            N  F  LV +R  + L   S   G+S     + F+TWV++LR +L   +R P + E+    P  F R    +V++  D TEI   +          +S YKH  T K L+G+TP G +C++S++YGG  SD ++    G++ ELV                  G  VMADRGF+ IA  L   G+    PP     + Q      E TR +A +RIHVERAI  +K +++ +     S  D++  +F  C A++ +   P + 
Sbjct:  316 NEFFAVLVRLRVKLLLTDISQRLGISEAHFSKIFSTWVRFLRLELSELMRFPSLREIQKNLPPQFSRYPNTRVII--DCTEIHVEKPSSLKAQRQTWSNYKHNNTYKALVGITPDGTVCFLSNLYGGCASDKKITRECGIVGELVS-----------------GDCVMADRGFD-IADLLNPKGVQLNIPPFLHAKDGQLTPEQVEETRRIAEVRIHVERAIQRIKSFQILQGTIPLSLHDLVEDIFLTC-AILTIFQTPIIK 557          
BLAST of mRNA_E_fasciculatus_S2_contig7229.15412.1 vs.
Match: uncharacterized (protein LOC114970732 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF11E27)

HSP 1 Score: 132 bits (332), Expect = 3.110e-30
Identity = 95/307 (30.94%), Postives = 144/307 (46.91%), Query Frame = 3
Query:  210 GLPGF----VCLQKLYAAINTEGEADNMVFYDSPQPGPYSAPRKSTFRGINGLFFCLVVMRTGMTLVVASMLFGVSPQTGGRAFTTWVKYLRGKLRPWLRLPEVDEVAAKAPANFKRKQMEKVVVVLDATEIETVRVWHTNLAFYLYSTYKHKPTGKVLIGVTPSGVICYISSMYGGRMSDTELVARSGVISELVEKGFGSRTAAENSGGGMGGYMVMADRGFNGIAMQLYEAGLGYVAPPATREHELQFKEVDAEHTRDVANLRIHVERAIGALKQWKMCENKFDSSQMDVMPLVFEVCGALVNML 1118
            GLP +     C   +  A N  GE +  +   +P+ G    PR  T          L+ +R G+     +  FG++  T       W K LR +L P +R+PE D +   +P  FK+    KVV+V+D TEIE  R    N     YS+YK +PT KVL+G+TPSGV+ Y+S ++ G  SD E++ +S  +  L                   G  VMAD+GFN I  +L   G   +  P+  +   QF E +    + +A+LRIHVER +  +K W + + +   +       +  +  AL N L
Sbjct:  204 GLPNYKMLMFCFDLVQEASNEFGETEGEMNQKTPKIG---RPRAQT--PFQEYIMVLMRLRLGLFEKDLAHRFGIAIGTVSNITRKWYKLLRAQLGPLIRMPESDIIRYYSPPAFKQL-FPKVVIVIDCTEIEMERPSALNTQSACYSSYKSRPTMKVLVGITPSGVLSYVSELFPGSTSDQEIIVKSNFLDILAP-----------------GDSVMADKGFN-IKDELASVG-AVLEIPSFLKKGTQFTEEEINKNKAIASLRIHVERQMERIKNWHILDRRMPITMAPYASDIVVIISALANFL 485          
BLAST of mRNA_E_fasciculatus_S2_contig7229.15412.1 vs.
Match: uncharacterized (protein LOC119437367 n=2 Tax=Dermacentor silvarum TaxID=543639 RepID=UPI0018999409)

HSP 1 Score: 129 bits (324), Expect = 3.630e-30
Identity = 79/252 (31.35%), Postives = 120/252 (47.62%), Query Frame = 3
Query:  366 LVVMRTGMTLVVASMLFGVSPQTGGRAFTTWVKYLRGKLRPWLRLPEVDEVAAKAPANFKRKQMEKVVVVLDATEIETVRVWHTNLAFYLYSTYKHKPTGKVLIGVTPSGVICYISSMYGGRMSDTELVARSGVISELVEKGFGSRTAAENSGGGMGGYMVMADRGFNGIAMQLYEAGLGYVAPPATREHELQFKEVDAEHTRDVANLRIHVERAIGALKQWKMCENKFDSSQMDVMPLVFEVCGALVNMLN 1121
            LV +RTGM     +  F +S     R FTTW+ +L  +LR    +P  +++    P +F+    E   ++LDATE+   R    +     +S+YKH  T KVLIG TP G I ++S ++GG +SD  ++  SG++ +L                   G  +M D+GF           L    PP    HE+Q    D   TR +A+ R+HVER I  +K + + +  F    MD+   +F+VC  L N  N
Sbjct:  102 LVRLRTGMRGKELARNFSISESQVSRIFTTWINFLERELRHLNHIPSQEQILPHLPKSFRH--FENTRLILDATEVRIQRPSSQSAQRQTFSSYKHYNTYKVLIGCTPDGYIAFVSRLWGGSVSDKNILQCSGLLDDLEP-----------------GDAIMVDKGFT---FPYLPPELTVYRPPFRERHEMQMNAQDVLETRRIASARVHVERVIARVKSFHILDRPFPICMMDIAEHIFKVCCFLSNYRN 331          
BLAST of mRNA_E_fasciculatus_S2_contig7229.15412.1 vs.
Match: uncharacterized (protein LOC124458378 n=2 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04FFC4)

HSP 1 Score: 131 bits (330), Expect = 6.100e-30
Identity = 89/255 (34.90%), Postives = 128/255 (50.20%), Query Frame = 3
Query:  360 FCLVVMRTGMTLVVASML--FGVSPQTGGRAFTTWVKYLRGKLRPWLRLPEVDEVAAKAPANFKRKQMEKVVVVLDATEIETVRVWHTNLAFYLYSTYKHKPTGKVLIGVTPSGVICYISSMYGGRMSDTELVARSGVISELVEKGFGSRTAAENSGGGMGGYMVMADRGFNGIAMQLYEAGLGYVAPPATREHELQFKEVDAEHTRDVANLRIHVERAIGALKQWKMCENKFDSSQMDVMPLVFEVCGALVNML 1118
            + LV+MR  + L    +   FGV+  T       W+K LR KL   +R+PE D +   +P  FK+    +VV+V+D TEIE  R    N     YS+YK +PT KVLIG+TPSGV+ YIS ++ G  SD E+V +S  +  L                   G  VMADRGFN I  +L   G  ++  P+  + + QF + +    + + +LRIHVER +  LK W + + K   +   +      V  AL N L
Sbjct:  255 YILVLMRLRLGLFEKDLAHRFGVAVGTVSNIIRKWIKLLRAKLGSLIRMPERDTIKYYSPPAFKQL-FPQVVIVIDCTEIEMERPSALNNQSACYSSYKSRPTMKVLIGITPSGVLSYISELFPGSTSDLEIVKKSNFLDILSP-----------------GDSVMADRGFN-IKDELASVG-AFLEAPSFLQKKTQFTQEEINKNKAIPSLRIHVERQMERLKNWHILDRKIPITMAPLASDALVVIAALANFL 489          
BLAST of mRNA_E_fasciculatus_S2_contig7229.15412.1 vs.
Match: uncharacterized (protein LOC109481748 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4ZST3_BRABE)

HSP 1 Score: 132 bits (331), Expect = 6.210e-30
Identity = 84/253 (33.20%), Postives = 132/253 (52.17%), Query Frame = 3
Query:  366 LVVMRTGMTLVVASMLFGVSPQTGGRAFTTWVKYLRGKLRPWLRLPEVDEVAAKAPANFKRKQMEKVVVVLDATEIETVRVWHTNLAFYLYSTYKHKPTGKVLIGVTPSGVICYISSMYGGRMSDTELVARSGVISELVEKGFGSRTAAENSGGGMGGYMVMADRGFNGIAMQLYEAGLGYVAPPATREHELQFKEVDAEHTRDVANLRIHVERAIGALKQWKMCENKFDSSQMDVMPLVFEVCGALVNMLNE 1124
            L+ +R G+T+   ++LFG+ P +  +  +TWV++L G L+P +  P    ++   P  FK K   ++  ++D TEI   R  +  +    +S YK   T KVL+G+TP+G I ++S  YGGR SD  +  +SG + +LVE                   ++MADRGF  I   L         PPA  + + Q      + T+ VANLRIHVERAI  LK +++ +  F  S +     + +VC ALVN+ ++
Sbjct:  290 LMRLRLGLTINFLAILFGLVPSSCSQIVSTWVRFLSGTLQPLIVWPSRHAISTTLPTQFKNK-CSRIRCIMDCTEIFIERPRNLEMQAATWSDYKKHNTMKVLVGITPNGHISFLSKAYGGRASDVSITRKSGFL-DLVEPND----------------VIMADRGFP-IQEDLLLRHATLQIPPAA-QGKRQMARNKVKKTKTVANLRIHVERAINRLKDFRILDGTFPISLLPAADDIIKVCAALVNLQSD 522          
BLAST of mRNA_E_fasciculatus_S2_contig7229.15412.1 vs.
Match: uncharacterized (protein LOC111324035 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C043661)

HSP 1 Score: 130 bits (326), Expect = 7.360e-30
Identity = 90/282 (31.91%), Postives = 131/282 (46.45%), Query Frame = 3
Query:  309 PYSAPRKSTFRGINGLFFCLVVMRTGMTLVVASMLFGVSPQTGGRAFTTWVKYLRGKLRPWLRLPEVDEVAAKAPANFKRKQMEKVVVVLDATEIETVRVWHTNLAFYLYSTYKHKPTGKVLIGVTPSGVICYISSMYGGRMSDTELVARSGVISELVEKGFGSRTAAENSGGGMGGYMVMADRGFN-GIAMQLYEAGLGYVAPPATREHELQFKEVDAEHTRDVANLRIHVERAIGALKQ------------WKMCENKFDSSQMDVMPLVFEVCGALVNM 1115
            P  + +  T          L+ +R  + L   +  FGVS  T  R FTTW+  L  +L P +R PE DE+    P  F+    +K  +++D  EI   R  +       +S YKH+ T KVLIG+TP G +C+ S  +GGR SD  L  R G +  L                   G +V+ADRGF    ++  Y+A  G    PA  + + Q    D E TR +AN+RIHVER IG L+Q            +  C N  +++   ++  +  VC AL N+
Sbjct:  127 PLVSRKSKTLTLFQEFVMVLIKLRLNVPLQDLAFRFGVSLSTISRKFTTWMTVLDVRLSPLIRWPERDELWRTMPMCFQFSFGKKTTIIIDCFEISIERPSNLLARAQTFSNYKHRNTVKVLIGITPQGSVCFTSKAWGGRTSDKYLTERCGFLDNLKP-----------------GDVVLADRGFTISESVAFYQAQSG---TPAFTKGKNQLDPFDVERTRGIANMRIHVERVIGLLRQKYTILQSTLPLDYLTCSN--NAANCPLIDRMIRVCSALTNL 386          
BLAST of mRNA_E_fasciculatus_S2_contig7229.15412.1 vs.
Match: uncharacterized (protein LOC111107245 n=5 Tax=Eukaryota TaxID=2759 RepID=A0A8B8B4M8_CRAVI)

HSP 1 Score: 131 bits (329), Expect = 8.160e-30
Identity = 106/319 (33.23%), Postives = 161/319 (50.47%), Query Frame = 3
Query:  198 KSLCGLPGFVCLQKLYAAINTEGEADNMVFYD--SPQPGPYSAPRK-STFRGINGLFFCLVVMRTGMTLVVASMLFGVSPQTGGRAFTTWVKYLRGKLRPWLRLPEVDEVAAKAPANFKRKQMEKVVVVLDATEI---ETVRVWHTNLAFYLYSTYKHKPTGKVLIGVTPSGVICYISSMYGGRMSDTELVARSGVISELVEKGFGSRTAAENSGGGMGGYMVMADRGFNGIAMQLYEAGLGYVAPPATREHELQFKEVDAEHTRDVANLRIHVERAIGALKQWKMCENKFDSSQMDVMPLVFEVCGALVNMLNEPFVS 1136
            K   GLP F     L+  +  + E   MV++   S  PG  + PR+  + + I+     L+ ++ G+ +   +  FGVS  T  + FTTWV  L  +LRP    P  D +    P+ F       + V+LD TEI   ++  + + NL+F   S YKH  T K LIG+TPSGVI  +S  +GGR+SD +++ +S ++ +++E+G G                VMAD+GF  IA  L + G     PP  R    QF   D   T+++A LRIHVERAIG +K + + +     S   ++  +F VC  + N L+ P V 
Sbjct:  200 KFYTGLPSFAVFMWLFNYLVPKCE--KMVYWRGASATPGERARPRRLMSLQLIDQFLATLMRLKVGLYVEDIAERFGVSVGTYSQYFTTWVCLLYQELRPLNPFPSRDIIQRNMPSCFHT--FPNLRVILDCTEIFVQKSSSLVNQNLSF---SHYKHHTTVKFLIGITPSGVISLVSEGFGGRVSDRQMIEKS-LLLDMLEEGDG----------------VMADKGFT-IADMLEKKGCTLNIPPF-RSSSTQFSSQDVLKTQEIAKLRIHVERAIGRVKNFHIFDGVLSLSLAPLVSQMFSVCCWITN-LDVPLVD 491          
BLAST of mRNA_E_fasciculatus_S2_contig7229.15412.1 vs.
Match: uncharacterized (protein LOC119441499 n=1 Tax=Dermacentor silvarum TaxID=543639 RepID=UPI00189963FF)

HSP 1 Score: 131 bits (329), Expect = 1.620e-29
Identity = 80/255 (31.37%), Postives = 121/255 (47.45%), Query Frame = 3
Query:  357 FFCLVVMRTGMTLVVASMLFGVSPQTGGRAFTTWVKYLRGKLRPWLRLPEVDEVAAKAPANFKRKQMEKVVVVLDATEIETVRVWHTNLAFYLYSTYKHKPTGKVLIGVTPSGVICYISSMYGGRMSDTELVARSGVISELVEKGFGSRTAAENSGGGMGGYMVMADRGFNGIAMQLYEAGLGYVAPPATREHELQFKEVDAEHTRDVANLRIHVERAIGALKQWKMCENKFDSSQMDVMPLVFEVCGALVNMLN 1121
            F  LV +RTGM     +  F +S     R FTTW+ +L  +LR    +P  +++    P +F+    E   ++LDATE+   R    +     +S+YKH  T KVLIG TP G I ++S ++GG +SD  ++  SG++ +L                   G  +M D+GF           L    PP    HE+Q    D   TR +A+ R+HVER I  +K + + +  F    MD+   +F+VC  L N  N
Sbjct:  324 FMVLVRLRTGMRGKELARNFSISESQVSRIFTTWINFLERELRHLNHIPSREQILPHLPKSFRH--FENTRLILDATEVRIQRPSSQSAQRQTFSSYKHYNTYKVLIGCTPDGYIAFVSRLWGGSVSDKNILQCSGLLDDLEP-----------------GDAIMVDKGFT---FPYLPPDLTVYRPPFRERHEMQMNAQDVLETRRIASARVHVERVIARVKSFHILDRPFPICMMDIAEHIFKVCCFLSNYRN 556          
BLAST of mRNA_E_fasciculatus_S2_contig7229.15412.1 vs.
Match: SAP (domain-containing protein n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SNI8_STYPI)

HSP 1 Score: 130 bits (326), Expect = 3.120e-29
Identity = 90/282 (31.91%), Postives = 131/282 (46.45%), Query Frame = 3
Query:  309 PYSAPRKSTFRGINGLFFCLVVMRTGMTLVVASMLFGVSPQTGGRAFTTWVKYLRGKLRPWLRLPEVDEVAAKAPANFKRKQMEKVVVVLDATEIETVRVWHTNLAFYLYSTYKHKPTGKVLIGVTPSGVICYISSMYGGRMSDTELVARSGVISELVEKGFGSRTAAENSGGGMGGYMVMADRGFN-GIAMQLYEAGLGYVAPPATREHELQFKEVDAEHTRDVANLRIHVERAIGALKQ------------WKMCENKFDSSQMDVMPLVFEVCGALVNM 1115
            P  + +  T          L+ +R  + L   +  FGVS  T  R FTTW+  L  +L P +R PE DE+    P  F+    +K  +++D  EI   R  +       +S YKH+ T KVLIG+TP G +C+ S  +GGR SD  L  R G +  L                   G +V+ADRGF    ++  Y+A  G    PA  + + Q    D E TR +AN+RIHVER IG L+Q            +  C N  +++   ++  +  VC AL N+
Sbjct:  264 PLVSRKSKTLTLFQEFVMVLIKLRLNVPLQDLAFRFGVSLSTISRKFTTWMTVLDVRLSPLIRWPERDELWRTMPMCFQFSFGKKTTIIIDCFEISIERPSNLLARAQTFSNYKHRNTVKVLIGITPQGSVCFTSKAWGGRTSDKYLTERCGFLDNLKP-----------------GDVVLADRGFTISESVAFYQAQSG---TPAFTKGKNQLDPFDVERTRGIANMRIHVERVIGLLRQKYTILQSTLPLDYLTCSN--NAANCPLIDRMIRVCSALTNL 523          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7229.15412.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
uncharacterized2.400e-3230.89protein LOC110990892 n=1 Tax=Acanthaster planci Ta... [more]
uncharacterized9.810e-3131.56protein LOC117315841 n=2 Tax=Pecten maximus TaxID=... [more]
uncharacterized3.110e-3030.94protein LOC114970732 n=1 Tax=Acropora millepora Ta... [more]
uncharacterized3.630e-3031.35protein LOC119437367 n=2 Tax=Dermacentor silvarum ... [more]
uncharacterized6.100e-3034.90protein LOC124458378 n=2 Tax=Xenia sp. Carnegie-20... [more]
uncharacterized6.210e-3033.20protein LOC109481748 n=1 Tax=Branchiostoma belcher... [more]
uncharacterized7.360e-3031.91protein LOC111324035 n=1 Tax=Stylophora pistillata... [more]
uncharacterized8.160e-3033.23protein LOC111107245 n=5 Tax=Eukaryota TaxID=2759 ... [more]
uncharacterized1.620e-2931.37protein LOC119441499 n=1 Tax=Dermacentor silvarum ... [more]
SAP3.120e-2931.91domain-containing protein n=1 Tax=Stylophora pisti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7229contigE_fasciculatus_S2_contig7229:4789..7280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeMetazoa
Stop1
Start1
Seed ortholog score129.8
Seed ortholog evalue2.3e-27
Seed eggNOG ortholog7668.SPU_012890-tr
Model size1341
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Helix-turn-helix of DDE superfamily endonuclease
EggNOG OGs28TD2@1,2R03G@2759,39UG8@33154,3BMFJ@33208,3D3U0@33213
Cds size966
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842386.3793378-UTR-E_fasciculatus_S2_contig7229:4788..49841696842386.3793378-UTR-E_fasciculatus_S2_contig7229:4788..4984Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7229 4789..4984 -
1696842386.4076483-UTR-E_fasciculatus_S2_contig7229:7022..70421696842386.4076483-UTR-E_fasciculatus_S2_contig7229:7022..7042Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7229 7023..7042 -
1696842386.417341-UTR-E_fasciculatus_S2_contig7229:7121..72801696842386.417341-UTR-E_fasciculatus_S2_contig7229:7121..7280Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7229 7122..7280 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842386.3903286-CDS-E_fasciculatus_S2_contig7229:4984..58931696842386.3903286-CDS-E_fasciculatus_S2_contig7229:4984..5893Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7229 4985..5893 -
1696842386.399173-CDS-E_fasciculatus_S2_contig7229:6965..70221696842386.399173-CDS-E_fasciculatus_S2_contig7229:6965..7022Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7229 6966..7022 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7229.15412.1prot_E_fasciculatus_S2_contig7229.15412.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7229 4985..7022 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7229.15412.1

>prot_E_fasciculatus_S2_contig7229.15412.1 ID=prot_E_fasciculatus_S2_contig7229.15412.1|Name=mRNA_E_fasciculatus_S2_contig7229.15412.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=322bp
MSSQGAKSLCGLPGFVCLQKLYAAINTEGEADNMVFYDSPQPGPYSAPRK
STFRGINGLFFCLVVMRTGMTLVVASMLFGVSPQTGGRAFTTWVKYLRGK
LRPWLRLPEVDEVAAKAPANFKRKQMEKVVVVLDATEIETVRVWHTNLAF
YLYSTYKHKPTGKVLIGVTPSGVICYISSMYGGRMSDTELVARSGVISEL
VEKGFGSRTAAENSGGGMGGYMVMADRGFNGIAMQLYEAGLGYVAPPATR
EHELQFKEVDAEHTRDVANLRIHVERAIGALKQWKMCENKFDSSQMDVMP
LVFEVCGALVNMLNEPFVSYE*
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mRNA from alignment at E_fasciculatus_S2_contig7229:4789..7280-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7229.15412.1 ID=mRNA_E_fasciculatus_S2_contig7229.15412.1|Name=mRNA_E_fasciculatus_S2_contig7229.15412.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2492bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7229:4789..7280- (Ectocarpus fasciculatus EfasUO2)
CATCAGGGGGGTGCTCTGGGTAGGGCGTTGAAGAGCGAGGCGAGGCTTCG TTCCTACATGCAGAAAGCGGCGGAGGAGGCGGCGGAAGCTCAGAGATTAA AAGCTCTGCTGAGGCACGCCACAACGGAAAATAGTTCTCTGAGAGAGAGC CTGCGTTGTGCACGGGCCAAGACCACAGCATCAGGAAAAGGGGTTGGTGG AGGGACTGCGATAGCGGGCGGGGGAGGGAGTACGATAGACTACACCATCA CAGTGGGCATGTCGTCCCAAGGAGCAAAGAGCCTCTGCGGTCTTCCGGGT TTCGTTTGTCTCCAGGTAAGCAGGTGTGGGATGCAGGTGTTGGATGATCC CTCTACTGCTGTTGTTGTAGTCTAGATGGCAACAGGCTTTGGGGCTGCTG GCTTCTGAGCGAGAACACATGCGTCCCACGAGATGAGCTTGACGGGAAAT CCTCTGCTGCCCATCGGCGAATATACAGCCTTCTCTTTTTCCCGATACGA GTTGTGCCCGCTGCTCAGACCGTTTGATCCGCCGTCGATGAACTGTTTCC AAGCGCCTCTTCTTTGCGTGCCAAGCTGTGGCCTGCTGCTGTAAACAAGT CATGTGTGCACACACCAGACTGCTGAACTTCGCTTCGATGTGCAGTGCGT TGCGTTGGGGAGTGCCCCATGGGTAATCGCGCCACACGGTGGGATGGAGA GGACATCTTCTTGGGAACAGCGCACAGACTTGTGCCACGCATAACCTCAG CTTTTGTTGCGGGTTCGAGCCTCAAAAGTATGCTTTGAAAGTATCGGCAG TAGTATGCATATTGACAAACACATGCTGCTGTAGGGGACTGCCCCTACAG AGGTTAAACCTACTGCTGCATACGAAGGAAATGTGTTTAGCAGTCAGTCT TCACAGCAGTGTGGCATCTGCTACCTCAACAGAAGCTCCGATTCTTTACA ATGAGCGTATTGCCTTGGGTAAGTTCCCGATTCGTTGCGATGTACGCAAG AGGTATAAAATGAAATGCACTTTCGCTTTGCATAGTTCGTTCCGGAGAAT CGCACCGCCTCTATTATTAGAGGAGTAAATGCTTGCCGTCTGGCCGGGAG CAACAGTACTTAACCAAGCTTTGCGAAGCGTCTGTCTGGCCGAGAGCAAC AGTATTTTAAACCGAGTTCGAAGCGGCTGGGTGTTACATAGTCCTCTCTC TCTCCCTCCCTTCTTTGTCTCTCCCTCTCTCTCTCTCTAGATAGATGTAT CTCTCTCTCTCTCTCTCTCTCTCTTGTTCTCTCCCTCTCTCTCTCTCATT CTCTCTCAATCACACACACACCCACGCCCTCTTCCCGTATCCCCCTCTGT CTTTCACCGTCACTGCTGTCGTTGACATCTGTGACAGAAACTGTACGCCG CTATTAATACGGAAGGGGAAGCGGACAACATGGTGTTCTACGATTCCCCG CAGCCTGGTCCGTACTCGGCACCCAGGAAAAGCACGTTCCGCGGTATCAA TGGACTCTTCTTCTGTCTTGTGGTGATGAGGACTGGCATGACGCTTGTTG TTGCCTCCATGCTTTTCGGAGTTAGCCCGCAGACTGGTGGTAGGGCGTTT ACCACGTGGGTTAAATATCTTCGTGGGAAGCTGCGCCCTTGGTTACGATT GCCAGAGGTAGACGAGGTGGCAGCAAAGGCTCCAGCCAACTTCAAGAGGA AGCAGATGGAAAAGGTTGTTGTGGTCCTAGATGCGACAGAAATTGAGACG GTACGAGTATGGCATACCAACCTCGCGTTTTACCTGTATTCAACCTACAA GCACAAACCTACTGGCAAAGTCCTCATCGGCGTGACGCCTAGTGGTGTAA TCTGCTATATCTCGAGCATGTACGGTGGCAGAATGTCTGACACAGAATTG GTTGCCCGGAGTGGGGTGATATCCGAACTTGTGGAGAAGGGTTTCGGCAG TAGAACCGCGGCAGAAAATTCGGGGGGGGGGATGGGCGGCTATATGGTCA TGGCTGACAGGGGCTTCAACGGAATAGCCATGCAGCTGTATGAGGCTGGG TTGGGGTATGTCGCTCCGCCAGCGACGCGTGAGCACGAACTCCAGTTTAA GGAGGTAGACGCCGAGCATACGCGCGACGTTGCTAACCTGAGGATTCATG TAGAGCGTGCCATAGGGGCTCTAAAGCAGTGGAAGATGTGCGAAAACAAA TTCGATTCATCCCAGATGGATGTAATGCCTCTGGTTTTCGAAGTATGCGG AGCGCTTGTTAACATGCTAAATGAACCCTTCGTGAGTTACGAATAATTCT GTTCGTGAGATCCGTACTTCCGAATATTTTAGAAAGTGCCAAGCTCTGTT CATTGGTTGCGATACGGAGACGTCACTGGCATGCCACGCCACGTTCGACT ACGGCTTCCTGATCAGGTTACTTGTTCCTTTTTCGGCTATTTTTTTTTCC TTTTTTGTATTTTGTTGTGCATGGGCGAGGAGTAGGTGACCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7229:4789..7280-

>mRNA_E_fasciculatus_S2_contig7229.15412.1 ID=mRNA_E_fasciculatus_S2_contig7229.15412.1|Name=mRNA_E_fasciculatus_S2_contig7229.15412.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=966bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7229:4789..7280- (Ectocarpus fasciculatus EfasUO2)
ATGTCGTCCCAAGGAGCAAAGAGCCTCTGCGGTCTTCCGGGTTTCGTTTG
TCTCCAGAAACTGTACGCCGCTATTAATACGGAAGGGGAAGCGGACAACA
TGGTGTTCTACGATTCCCCGCAGCCTGGTCCGTACTCGGCACCCAGGAAA
AGCACGTTCCGCGGTATCAATGGACTCTTCTTCTGTCTTGTGGTGATGAG
GACTGGCATGACGCTTGTTGTTGCCTCCATGCTTTTCGGAGTTAGCCCGC
AGACTGGTGGTAGGGCGTTTACCACGTGGGTTAAATATCTTCGTGGGAAG
CTGCGCCCTTGGTTACGATTGCCAGAGGTAGACGAGGTGGCAGCAAAGGC
TCCAGCCAACTTCAAGAGGAAGCAGATGGAAAAGGTTGTTGTGGTCCTAG
ATGCGACAGAAATTGAGACGGTACGAGTATGGCATACCAACCTCGCGTTT
TACCTGTATTCAACCTACAAGCACAAACCTACTGGCAAAGTCCTCATCGG
CGTGACGCCTAGTGGTGTAATCTGCTATATCTCGAGCATGTACGGTGGCA
GAATGTCTGACACAGAATTGGTTGCCCGGAGTGGGGTGATATCCGAACTT
GTGGAGAAGGGTTTCGGCAGTAGAACCGCGGCAGAAAATTCGGGGGGGGG
GATGGGCGGCTATATGGTCATGGCTGACAGGGGCTTCAACGGAATAGCCA
TGCAGCTGTATGAGGCTGGGTTGGGGTATGTCGCTCCGCCAGCGACGCGT
GAGCACGAACTCCAGTTTAAGGAGGTAGACGCCGAGCATACGCGCGACGT
TGCTAACCTGAGGATTCATGTAGAGCGTGCCATAGGGGCTCTAAAGCAGT
GGAAGATGTGCGAAAACAAATTCGATTCATCCCAGATGGATGTAATGCCT
CTGGTTTTCGAAGTATGCGGAGCGCTTGTTAACATGCTAAATGAACCCTT
CGTGAGTTACGAATAA
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