mRNA_E_fasciculatus_S2_contig7228.15410.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7228.15410.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHT9_9PHAE) HSP 1 Score: 170 bits (431), Expect = 9.540e-49 Identity = 86/109 (78.90%), Postives = 96/109 (88.07%), Query Frame = 1
Query: 1 LHDASGKGHDLIVSLLLKHGADPNIDAGGNRVTPLILAAKEGHAGVAVALLSDARVDIGQRCGVGGHSALDLAAIGGHTDIISAIVERQPDVLNSASNETGFSALHHAA 327
LH ASG GHDL+VSLLL+HGADPNID G+ +TPL+LAAKEGH V VALLSDARVD+GQR G GG SALDLAAIGGH D+ISAIVERQPDVL+S S++TGFSALHHAA
Sbjct: 23 LHLASGLGHDLVVSLLLEHGADPNIDTDGDGMTPLLLAAKEGHVRVVVALLSDARVDVGQRHGAGGRSALDLAAIGGHADVISAIVERQPDVLDSTSDDTGFSALHHAA 131
BLAST of mRNA_E_fasciculatus_S2_contig7228.15410.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0W1_ECTSI) HSP 1 Score: 110 bits (276), Expect = 1.080e-26 Identity = 57/71 (80.28%), Postives = 61/71 (85.92%), Query Frame = 1
Query: 1 LHDASGKGHDLIVSLLLKHGADPNIDAGGNRVTPLILAAKEGHAGVAVALLSDARVDIGQRCGVGGHSALD 213
LH ASG GHDLIVSLLLKHGADPNID G+ +TPL+LA+KEGH V VALLSDARVDIGQR G GGHSALD
Sbjct: 21 LHRASGLGHDLIVSLLLKHGADPNIDTDGDGMTPLLLASKEGHVRVVVALLSDARVDIGQRHGEGGHSALD 91
BLAST of mRNA_E_fasciculatus_S2_contig7228.15410.1 vs.
Match: Similar (to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0W3_ECTSI) HSP 1 Score: 87.8 bits (216), Expect = 1.190e-19 Identity = 46/61 (75.41%), Postives = 50/61 (81.97%), Query Frame = 1
Query: 1 LHDASGKGHDLIVSLLLKHGADPNIDAGGNRVTPLILAAKEGHAGVAVALLSDARVDIGQR 183
LH S GHDLIVSLLLKHGADPNI + +TPL+LAAKEGH VAVALLSDARVD+GQR
Sbjct: 23 LHRTSRLGHDLIVSLLLKHGADPNIVTDFDGMTPLLLAAKEGHVRVAVALLSDARVDVGQR 83
BLAST of mRNA_E_fasciculatus_S2_contig7228.15410.1 vs.
Match: ANK_REP_REGION (domain-containing protein n=1 Tax=Globodera pallida TaxID=36090 RepID=A0A183BNJ7_GLOPA) HSP 1 Score: 57.0 bits (136), Expect = 3.880e-7 Identity = 44/122 (36.07%), Postives = 63/122 (51.64%), Query Frame = 1
Query: 1 LHDASGKGHDLIVSLLLKHGADPNIDAGGNRVTPLILAAKEGHAGVAVALLSDARVDIGQRCGVG-GHSALDLAAIGGHTDIISAIVERQPD------------VLNSASNETGFSALHHAA 327
LH A+G GH IV +LL++GA+P D N +TPL LAA GH+G+ L +RC G +A +AA GH+D I+ +++ P V+ + E GF+ LH AA
Sbjct: 1247 LHMAAGGGHAKIVKILLENGANPE-DENANGMTPLSLAAWNGHSGI----LPCFDRKYWRRCSKKTGLNAFHIAAYKGHSDFINEMIKCVPASVRSEPPMFNHLVMKEFATEYGFTPLHLAA 1363
BLAST of mRNA_E_fasciculatus_S2_contig7228.15410.1 vs.
Match: Uncharacterized (protein n=1 Tax=Fusarium tricinctum TaxID=61284 RepID=A0A8K0SB35_9HYPO) HSP 1 Score: 53.5 bits (127), Expect = 6.350e-6 Identity = 36/111 (32.43%), Postives = 59/111 (53.15%), Query Frame = 1
Query: 19 KGHDLIVSLLLKHGADPNIDAGGNRVTPLILAAKEGHAGVAVALLSDARVDIGQRCG------VGGHSALDLAAIGGHTDIISAIVERQPDV--LNSASNETGFSALHHAA 327
+G + +L+ GAD ++ A N ++P I+ KEG+ V A++ A VD C ++AL LAA+GGH D+++ ++E P + +N+ S G S H AA
Sbjct: 1049 QGKHNVARMLIDRGADASL-APPNSMSPYIMTVKEGYVVVLEAIVERAPVDFDWLCSHDYQEDSDTYNALQLAAVGGHRDVLTTLLEATPLINKINTTSPRHGSSPAHLAA 1158
BLAST of mRNA_E_fasciculatus_S2_contig7228.15410.1 vs.
Match: ANK_REP_REGION (domain-containing protein n=1 Tax=Meloidogyne hapla TaxID=6305 RepID=A0A1I8AYC2_MELHA) HSP 1 Score: 52.0 bits (123), Expect = 2.040e-5 Identity = 37/96 (38.54%), Postives = 53/96 (55.21%), Query Frame = 1
Query: 1 LHDASGKGHDLIVSLLLKHGADPNIDAGGNRVTPLILAAKEGHAGVAVALLSDARVDIGQRCGVG-GHSALDLAAIGGHTDIISAIVERQPDVLNS 285
LH AS GH IV +LL++GA P+ D N +TPL LAA GH V +L+ +RC G +A +AA GH+D I+ +++ P + S
Sbjct: 413 LHMASSGGHSRIVKILLENGASPD-DENANGMTPLCLAAWNGH----VPILACFDKKYWRRCSKKTGLNAFHVAAYKGHSDFINEMIKHIPASVRS 503
BLAST of mRNA_E_fasciculatus_S2_contig7228.15410.1 vs.
Match: Poly ([ADP-ribose] polymerase n=2 Tax=Bradysia TaxID=35571 RepID=A0A8J5E8J6_9DIPT) HSP 1 Score: 52.0 bits (123), Expect = 2.210e-5 Identity = 38/111 (34.23%), Postives = 60/111 (54.05%), Query Frame = 1
Query: 1 LHDASGKGHDLIVSLLLKHGADPN--IDAGGNRVTPLILAAKEGHAGVAVALLSDARVDIGQRCGVGGHSALDLAAIGGHTDIISAIVERQPDVLNSASNETGFSALHHAA 327
LH A+ GH IVS+LL GADP+ A +++TP +LAA++GH V L+ + + G SAL A I G ++S ++ + LN + +G + +H+AA
Sbjct: 513 LHRAAEAGHSDIVSILLAAGADPDKFTPARYDKLTPFMLAARQGHVNVLKTFLTHGYMKV-NAVDHKGRSALAHAIINGQAHVVSYLLRIGANNLNK--DTSGNTLVHYAA 620
BLAST of mRNA_E_fasciculatus_S2_contig7228.15410.1 vs.
Match: PGG (domain-containing protein (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7B0V0_DAVIN) HSP 1 Score: 50.1 bits (118), Expect = 9.720e-5 Identity = 37/113 (32.74%), Postives = 61/113 (53.98%), Query Frame = 1
Query: 1 LHDASGKGHDLIVSLLLKHGADPNIDAGGNRV--TPLILAAKEGHAGVA--VALLSDARVDIGQRCGVGGHSALDLAAIGGHTDIISAIVERQPDVLNSASNETGFSALHHAA 327
LH+A H +V LL+K DP + N +PL LAA++G + + +L+ + G G +AL A +GGH DI+ A++ +P ++ S S+ G++ LH+AA
Sbjct: 113 LHEAVRNHHVTVVELLIK--VDPELACFSNNAGESPLYLAARDGMLEIVNQILILAPSWAHGGSE----GQTALHAAILGGHNDIMEALLRVKPQLI-SESDGRGWTPLHYAA 218 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7228.15410.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7228.15410.1 >prot_E_fasciculatus_S2_contig7228.15410.1 ID=prot_E_fasciculatus_S2_contig7228.15410.1|Name=mRNA_E_fasciculatus_S2_contig7228.15410.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=109bp LHDASGKGHDLIVSLLLKHGADPNIDAGGNRVTPLILAAKEGHAGVAVALback to top mRNA from alignment at E_fasciculatus_S2_contig7228:7404..7730+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7228.15410.1 ID=mRNA_E_fasciculatus_S2_contig7228.15410.1|Name=mRNA_E_fasciculatus_S2_contig7228.15410.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=327bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7228:7404..7730+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7228:7404..7730+ >mRNA_E_fasciculatus_S2_contig7228.15410.1 ID=mRNA_E_fasciculatus_S2_contig7228.15410.1|Name=mRNA_E_fasciculatus_S2_contig7228.15410.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=327bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7228:7404..7730+ (Ectocarpus fasciculatus EfasUO2)back to top |