mRNA_E_fasciculatus_S2_contig7228.15410.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7228.15410.1
Unique NamemRNA_E_fasciculatus_S2_contig7228.15410.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7228.15410.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHT9_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 9.540e-49
Identity = 86/109 (78.90%), Postives = 96/109 (88.07%), Query Frame = 1
Query:    1 LHDASGKGHDLIVSLLLKHGADPNIDAGGNRVTPLILAAKEGHAGVAVALLSDARVDIGQRCGVGGHSALDLAAIGGHTDIISAIVERQPDVLNSASNETGFSALHHAA 327
            LH ASG GHDL+VSLLL+HGADPNID  G+ +TPL+LAAKEGH  V VALLSDARVD+GQR G GG SALDLAAIGGH D+ISAIVERQPDVL+S S++TGFSALHHAA
Sbjct:   23 LHLASGLGHDLVVSLLLEHGADPNIDTDGDGMTPLLLAAKEGHVRVVVALLSDARVDVGQRHGAGGRSALDLAAIGGHADVISAIVERQPDVLDSTSDDTGFSALHHAA 131          
BLAST of mRNA_E_fasciculatus_S2_contig7228.15410.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0W1_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 1.080e-26
Identity = 57/71 (80.28%), Postives = 61/71 (85.92%), Query Frame = 1
Query:    1 LHDASGKGHDLIVSLLLKHGADPNIDAGGNRVTPLILAAKEGHAGVAVALLSDARVDIGQRCGVGGHSALD 213
            LH ASG GHDLIVSLLLKHGADPNID  G+ +TPL+LA+KEGH  V VALLSDARVDIGQR G GGHSALD
Sbjct:   21 LHRASGLGHDLIVSLLLKHGADPNIDTDGDGMTPLLLASKEGHVRVVVALLSDARVDIGQRHGEGGHSALD 91          
BLAST of mRNA_E_fasciculatus_S2_contig7228.15410.1 vs.
Match: Similar (to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0W3_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 1.190e-19
Identity = 46/61 (75.41%), Postives = 50/61 (81.97%), Query Frame = 1
Query:    1 LHDASGKGHDLIVSLLLKHGADPNIDAGGNRVTPLILAAKEGHAGVAVALLSDARVDIGQR 183
            LH  S  GHDLIVSLLLKHGADPNI    + +TPL+LAAKEGH  VAVALLSDARVD+GQR
Sbjct:   23 LHRTSRLGHDLIVSLLLKHGADPNIVTDFDGMTPLLLAAKEGHVRVAVALLSDARVDVGQR 83          
BLAST of mRNA_E_fasciculatus_S2_contig7228.15410.1 vs.
Match: ANK_REP_REGION (domain-containing protein n=1 Tax=Globodera pallida TaxID=36090 RepID=A0A183BNJ7_GLOPA)

HSP 1 Score: 57.0 bits (136), Expect = 3.880e-7
Identity = 44/122 (36.07%), Postives = 63/122 (51.64%), Query Frame = 1
Query:    1 LHDASGKGHDLIVSLLLKHGADPNIDAGGNRVTPLILAAKEGHAGVAVALLSDARVDIGQRCGVG-GHSALDLAAIGGHTDIISAIVERQPD------------VLNSASNETGFSALHHAA 327
            LH A+G GH  IV +LL++GA+P  D   N +TPL LAA  GH+G+    L        +RC    G +A  +AA  GH+D I+ +++  P             V+   + E GF+ LH AA
Sbjct: 1247 LHMAAGGGHAKIVKILLENGANPE-DENANGMTPLSLAAWNGHSGI----LPCFDRKYWRRCSKKTGLNAFHIAAYKGHSDFINEMIKCVPASVRSEPPMFNHLVMKEFATEYGFTPLHLAA 1363          
BLAST of mRNA_E_fasciculatus_S2_contig7228.15410.1 vs.
Match: Uncharacterized (protein n=1 Tax=Fusarium tricinctum TaxID=61284 RepID=A0A8K0SB35_9HYPO)

HSP 1 Score: 53.5 bits (127), Expect = 6.350e-6
Identity = 36/111 (32.43%), Postives = 59/111 (53.15%), Query Frame = 1
Query:   19 KGHDLIVSLLLKHGADPNIDAGGNRVTPLILAAKEGHAGVAVALLSDARVDIGQRCG------VGGHSALDLAAIGGHTDIISAIVERQPDV--LNSASNETGFSALHHAA 327
            +G   +  +L+  GAD ++ A  N ++P I+  KEG+  V  A++  A VD    C          ++AL LAA+GGH D+++ ++E  P +  +N+ S   G S  H AA
Sbjct: 1049 QGKHNVARMLIDRGADASL-APPNSMSPYIMTVKEGYVVVLEAIVERAPVDFDWLCSHDYQEDSDTYNALQLAAVGGHRDVLTTLLEATPLINKINTTSPRHGSSPAHLAA 1158          
BLAST of mRNA_E_fasciculatus_S2_contig7228.15410.1 vs.
Match: ANK_REP_REGION (domain-containing protein n=1 Tax=Meloidogyne hapla TaxID=6305 RepID=A0A1I8AYC2_MELHA)

HSP 1 Score: 52.0 bits (123), Expect = 2.040e-5
Identity = 37/96 (38.54%), Postives = 53/96 (55.21%), Query Frame = 1
Query:    1 LHDASGKGHDLIVSLLLKHGADPNIDAGGNRVTPLILAAKEGHAGVAVALLSDARVDIGQRCGVG-GHSALDLAAIGGHTDIISAIVERQPDVLNS 285
            LH AS  GH  IV +LL++GA P+ D   N +TPL LAA  GH    V +L+       +RC    G +A  +AA  GH+D I+ +++  P  + S
Sbjct:  413 LHMASSGGHSRIVKILLENGASPD-DENANGMTPLCLAAWNGH----VPILACFDKKYWRRCSKKTGLNAFHVAAYKGHSDFINEMIKHIPASVRS 503          
BLAST of mRNA_E_fasciculatus_S2_contig7228.15410.1 vs.
Match: Poly ([ADP-ribose] polymerase n=2 Tax=Bradysia TaxID=35571 RepID=A0A8J5E8J6_9DIPT)

HSP 1 Score: 52.0 bits (123), Expect = 2.210e-5
Identity = 38/111 (34.23%), Postives = 60/111 (54.05%), Query Frame = 1
Query:    1 LHDASGKGHDLIVSLLLKHGADPN--IDAGGNRVTPLILAAKEGHAGVAVALLSDARVDIGQRCGVGGHSALDLAAIGGHTDIISAIVERQPDVLNSASNETGFSALHHAA 327
            LH A+  GH  IVS+LL  GADP+    A  +++TP +LAA++GH  V    L+   + +       G SAL  A I G   ++S ++    + LN   + +G + +H+AA
Sbjct:  513 LHRAAEAGHSDIVSILLAAGADPDKFTPARYDKLTPFMLAARQGHVNVLKTFLTHGYMKV-NAVDHKGRSALAHAIINGQAHVVSYLLRIGANNLNK--DTSGNTLVHYAA 620          
BLAST of mRNA_E_fasciculatus_S2_contig7228.15410.1 vs.
Match: PGG (domain-containing protein (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7B0V0_DAVIN)

HSP 1 Score: 50.1 bits (118), Expect = 9.720e-5
Identity = 37/113 (32.74%), Postives = 61/113 (53.98%), Query Frame = 1
Query:    1 LHDASGKGHDLIVSLLLKHGADPNIDAGGNRV--TPLILAAKEGHAGVA--VALLSDARVDIGQRCGVGGHSALDLAAIGGHTDIISAIVERQPDVLNSASNETGFSALHHAA 327
            LH+A    H  +V LL+K   DP +    N    +PL LAA++G   +   + +L+ +    G      G +AL  A +GGH DI+ A++  +P ++ S S+  G++ LH+AA
Sbjct:  113 LHEAVRNHHVTVVELLIK--VDPELACFSNNAGESPLYLAARDGMLEIVNQILILAPSWAHGGSE----GQTALHAAILGGHNDIMEALLRVKPQLI-SESDGRGWTPLHYAA 218          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7228.15410.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
Uncharacterized9.540e-4978.90protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Ankyrin1.080e-2680.28repeat protein n=1 Tax=Ectocarpus siliculosus TaxI... [more]
Similar1.190e-1975.41to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosu... [more]
ANK_REP_REGION3.880e-736.07domain-containing protein n=1 Tax=Globodera pallid... [more]
Uncharacterized6.350e-632.43protein n=1 Tax=Fusarium tricinctum TaxID=61284 Re... [more]
ANK_REP_REGION2.040e-538.54domain-containing protein n=1 Tax=Meloidogyne hapl... [more]
Poly2.210e-534.23[ADP-ribose] polymerase n=2 Tax=Bradysia TaxID=355... [more]
PGG9.720e-532.74domain-containing protein (Fragment) n=1 Tax=David... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7228contigE_fasciculatus_S2_contig7228:7404..7730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score114.0
Seed ortholog evalue4.4e-23
Seed eggNOG ortholog2880.D7G0W1
Model size327
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-23_002070.1
Cds size327
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842386.247117-CDS-E_fasciculatus_S2_contig7228:7403..77301696842386.247117-CDS-E_fasciculatus_S2_contig7228:7403..7730Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7228 7404..7730 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7228.15410.1prot_E_fasciculatus_S2_contig7228.15410.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7228 7404..7730 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7228.15410.1

>prot_E_fasciculatus_S2_contig7228.15410.1 ID=prot_E_fasciculatus_S2_contig7228.15410.1|Name=mRNA_E_fasciculatus_S2_contig7228.15410.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=109bp
LHDASGKGHDLIVSLLLKHGADPNIDAGGNRVTPLILAAKEGHAGVAVAL
LSDARVDIGQRCGVGGHSALDLAAIGGHTDIISAIVERQPDVLNSASNET
GFSALHHAA
back to top

mRNA from alignment at E_fasciculatus_S2_contig7228:7404..7730+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7228.15410.1 ID=mRNA_E_fasciculatus_S2_contig7228.15410.1|Name=mRNA_E_fasciculatus_S2_contig7228.15410.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=327bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7228:7404..7730+ (Ectocarpus fasciculatus EfasUO2)
CTCCACGACGCCTCTGGAAAAGGGCACGACCTCATCGTGTCGCTCTTGCT CAAGCATGGCGCCGACCCCAACATCGATGCTGGCGGCAACCGTGTGACAC CCCTCATTTTGGCAGCTAAAGAAGGCCATGCTGGTGTGGCAGTAGCCTTG CTATCGGATGCTCGGGTCGATATTGGACAACGATGCGGCGTGGGCGGTCA CTCAGCCCTTGACCTCGCGGCGATTGGAGGGCATACCGATATCATTTCGG CGATTGTGGAGCGACAGCCGGACGTCCTTAACTCCGCGTCAAATGAGACT GGGTTTTCCGCCTTACACCACGCCGCC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7228:7404..7730+

>mRNA_E_fasciculatus_S2_contig7228.15410.1 ID=mRNA_E_fasciculatus_S2_contig7228.15410.1|Name=mRNA_E_fasciculatus_S2_contig7228.15410.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=327bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7228:7404..7730+ (Ectocarpus fasciculatus EfasUO2)
CTCCACGACGCCTCTGGAAAAGGGCACGACCTCATCGTGTCGCTCTTGCT
CAAGCATGGCGCCGACCCCAACATCGATGCTGGCGGCAACCGTGTGACAC
CCCTCATTTTGGCAGCTAAAGAAGGCCATGCTGGTGTGGCAGTAGCCTTG
CTATCGGATGCTCGGGTCGATATTGGACAACGATGCGGCGTGGGCGGTCA
CTCAGCCCTTGACCTCGCGGCGATTGGAGGGCATACCGATATCATTTCGG
CGATTGTGGAGCGACAGCCGGACGTCCTTAACTCCGCGTCAAATGAGACT
GGGTTTTCCGCCTTACACCACGCCGCC
back to top