mRNA_E_fasciculatus_S2_contig722.15399.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig722.15399.1
Unique NamemRNA_E_fasciculatus_S2_contig722.15399.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig722.15399.1 vs.
Match: Ubiquinone (biosynthesis protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV38_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 4.650e-40
Identity = 88/128 (68.75%), Postives = 96/128 (75.00%), Query Frame = 1 
Query:    1 QRALSAIDTQSVMSRVQPTAPLRRYLCYRSSPHFGRENAAGAGRTSRVFGRGLADGGAMHTTAADSTAAAAWLPSSTHGRLQDGGSRWAGLLTVASSSRGRFSTSSRAAA-APDASSTGAPQGVIGEE 381
            Q AL AID QS MSRVQP + LRRYLC RSSPH  +ENAAG G+T+RVFGRGL  G           AAA WL SS+HGRLQDGGS WAGLLTVASS RGRFSTSS +AA APD SS GAPQG +GE+
Sbjct:   14 QTALPAIDAQSAMSRVQPISSLRRYLCSRSSPHLPKENAAGGGKTARVFGRGLRPG----------PAAAPWLHSSSHGRLQDGGSTWAGLLTVASS-RGRFSTSSTSAAEAPDGSSAGAPQGGVGED 130
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig722.15399.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Ubiquinone4.650e-4068.75biosynthesis protein n=1 Tax=Ectocarpus sp. CCAP 1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig722contigE_fasciculatus_S2_contig722:25481..27499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size383
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionCOQ9
Ec32 orthologEc-23_000910.1
Cds size381
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842385.397555-CDS-E_fasciculatus_S2_contig722:25480..257781696842385.397555-CDS-E_fasciculatus_S2_contig722:25480..25778Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig722 25481..25778 +
1696842385.414453-CDS-E_fasciculatus_S2_contig722:27416..274991696842385.414453-CDS-E_fasciculatus_S2_contig722:27416..27499Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig722 27417..27499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig722.15399.1prot_E_fasciculatus_S2_contig722.15399.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig722 25481..27499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig722.15399.1

>prot_E_fasciculatus_S2_contig722.15399.1 ID=prot_E_fasciculatus_S2_contig722.15399.1|Name=mRNA_E_fasciculatus_S2_contig722.15399.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=127bp
QRALSAIDTQSVMSRVQPTAPLRRYLCYRSSPHFGRENAAGAGRTSRVFG
RGLADGGAMHTTAADSTAAAAWLPSSTHGRLQDGGSRWAGLLTVASSSRG
RFSTSSRAAAAPDASSTGAPQGVIGEE
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mRNA from alignment at E_fasciculatus_S2_contig722:25481..27499+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig722.15399.1 ID=mRNA_E_fasciculatus_S2_contig722.15399.1|Name=mRNA_E_fasciculatus_S2_contig722.15399.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2019bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig722:25481..27499+ (Ectocarpus fasciculatus EfasUO2)
CAGAGGGCTTTGTCTGCAATAGACACACAGAGCGTGATGTCCCGTGTACA
GCCAACCGCGCCATTGCGTAGGTATCTATGCTACCGGTCCTCACCGCATT
TTGGAAGAGAGAACGCTGCTGGAGCAGGAAGAACGTCCAGAGTATTTGGT
CGTGGTCTTGCCGATGGCGGTGCTATGCATACCACTGCTGCTGACTCGAC
TGCGGCTGCTGCTTGGTTGCCATCGAGCACCCACGGCCGACTGCAAGATG
GTGGTTCAAGATGGGCGGGGCTACTAACGGTGGCGAGCAGTAGCAGAGGT
GAGTGTTTTGTGAATACGGTTGCAATGGCTCCCTATTTTCTGGTTCAACC
AGTAGGCACGGCGTTCAGAGTGGCGCGGCGTCCTCCTCCTCTCTTGGGGC
TTCGGGCACTTCGGCAAGAAGGGCGTCCTCTCGTGTTTCCTTGCATCCCA
TGCCAAAGAAGCCTACCCCCACGTGAAAAGGTCCCGCTGAAGCCGCAATA
CTGGACCGGCTCCTGGTTTTTCTTTGCGTTGCATTGCAAGAACAACAGCG
GCCGGGCGATGCGTAAGCTATGTAACCTTCCTTCCAACAGCAACAATCGG
CAAAGAACTGCTGCGGGGTGTTGCCTCCTTGACGTTGGGTGCAGACGGAC
GAGCCGGCAGGCCCCGTTCATTGCCGGGCTGTGTCTTGCCTTGCTTGTAC
ATTCTTTTGAACTTTTCTCTCATCGTCGTGCTTGGTCAAGAGCGGGCGTG
TGATCGCTCTGAAGCGCACATATGTAGGTCCAGAGCAGCGTTGGGAGGCA
TACCAAAATAGAGCCAGTGCGCTTTGCCCAAAGTCCACTGCGGTTGTGCA
TAGGCCTGTCTGGGGACAGAACCCGCGTGCTTCTTGCGGATGTGGGTAGT
AGCGGCAGAGACACACGTGGGAGATGGTCTTAACTGCAGATTGTTGTGCC
CCAATCGCAGTCATGCTGTATTACTCTGGTAGCCTCGGTCGAGCCCTGGA
TGAGGATGGACATCTACTGCTCCACTCGTAGTGCCGAACAAGATGACGGT
GTTTGAGCGCAGGTTACGACTCTCATAGAGAACTACCGTAGGTGACACAA
GATACCACACCCCCTGGACCAATTTTCAAAGCTCGATTACTCCACGACGA
AGAGGATGCATAAATGAAACGATACATTTTCGGACAGCTCTCAACTAGAC
GGTTTCAACGCCGCCGTTTTCGGCGTTGCCCGTCGTTCTGTTGTGGGACA
ATCGAGCTTTGAAAACAGCTCCAAGGGGTGTGGTATCTTGTGTCACCTAC
GGTACGTGCCGACGGACGAAGGAGACGACGACGAGAGGGTGACGGTGATG
ACTTCCGGCACTCTTCTCGCCTCAAGCAGTTAGTGCAGTAGAAGTTGATG
CCAAGTCGAAGAACTTGATGTGGTATGTATAATTGGTAAAAAGAGGCTAG
GGACGAGGCGGCCCTTGTCGCTGTACGCAGTACCAGTACCCAAACAGTCA
GTAGTAGCACAACGGACGGCGACACGCCTCAGAGAAGAGCATTTTTTGGC
GTTCCACGAGATCGGCCGCCCTCCCATATAGTACATGAAGCCCTTTCACC
AGCCTCTTGCCCTCTCAGGCCGCTTGAACTTTGAACGGAGTCAGAAAATT
ATGCTTCTGTTCGACACGCCTCAAGAGCACAAGGGGCGAGTGCTGCTGTG
CACAACTGCCACCAACCAGTGCACTGTCTACTATGCTTCTTTGCTTGCAT
CCAAAGCCTCCGGCCTTCGTTGGCGTCCGTGTGTGCTCAACCTGGGCTGG
TTTTATGCGACCTCCACATATCTCACACCAAAATAGACGTCAGTTGTCGC
AACTCTCCGACCTACGTTTGGCCCTCCGCTTTGTCTTGGCCTCCCTTTTT
TTTCGTCGACCTCCCTGTTCTTGGAACCCCGTGCAGGTCGTTTCTCCACG
TCCTCGAGGGCAGCCGCGGCACCTGACGCTAGCAGCACGGGGGCTCCGCA
GGGTGTTATTGGAGAGGAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig722:25481..27499+

>mRNA_E_fasciculatus_S2_contig722.15399.1 ID=mRNA_E_fasciculatus_S2_contig722.15399.1|Name=mRNA_E_fasciculatus_S2_contig722.15399.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=381bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig722:25481..27499+ (Ectocarpus fasciculatus EfasUO2)
CAGAGGGCTTTGTCTGCAATAGACACACAGAGCGTGATGTCCCGTGTACA
GCCAACCGCGCCATTGCGTAGGTATCTATGCTACCGGTCCTCACCGCATT
TTGGAAGAGAGAACGCTGCTGGAGCAGGAAGAACGTCCAGAGTATTTGGT
CGTGGTCTTGCCGATGGCGGTGCTATGCATACCACTGCTGCTGACTCGAC
TGCGGCTGCTGCTTGGTTGCCATCGAGCACCCACGGCCGACTGCAAGATG
GTGGTTCAAGATGGGCGGGGCTACTAACGGTGGCGAGCAGTAGCAGAGGT
CGTTTCTCCACGTCCTCGAGGGCAGCCGCGGCACCTGACGCTAGCAGCAC
GGGGGCTCCGCAGGGTGTTATTGGAGAGGAG
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