mRNA_E_fasciculatus_S2_contig7206.15387.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7206.15387.1
Unique NamemRNA_E_fasciculatus_S2_contig7206.15387.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7206.15387.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P0_ECTSI)

HSP 1 Score: 296 bits (759), Expect = 6.080e-99
Identity = 149/166 (89.76%), Postives = 154/166 (92.77%), Query Frame = 1 
Query:  238 LVDVQENGYGDGFGWKFLLDATLTATRIRDNPQEEIVVLTTDLMLAGEDSANEARFFSQTSEALGTQQAPPVPRISLVFVEVVGSSSCGVGGGGVSGSLTGWNELQRLREGAKDRGRAFALDLIDNTPAMFDSQLRCWLRDSSPRQACSLRLPATETFSGVVIEVQ 735
            +VDV ENGYGDGFGWKFL+DATLTATRIR+   EEIVVLTTDLMLAGEDSANEARFFSQT+EALGTQQAPPVPRISLVFVEVVGSSSC VGG G S  LTGWN LQRLREGAKDRGRAFALDLIDNT AMFDSQLRCWLRDSSPRQACSLRLPATETFSGV IEV+
Sbjct:    1 MVDVPENGYGDGFGWKFLIDATLTATRIRERALEEIVVLTTDLMLAGEDSANEARFFSQTAEALGTQQAPPVPRISLVFVEVVGSSSCSVGGAGASDPLTGWNGLQRLREGAKDRGRAFALDLIDNTAAMFDSQLRCWLRDSSPRQACSLRLPATETFSGVTIEVE 166
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BLAST of mRNA_E_fasciculatus_S2_contig7206.15387.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUM8_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 5.470e-47
Identity = 92/120 (76.67%), Postives = 93/120 (77.50%), Query Frame = 1 
Query:  241 VDVQENGYGDGFGWKFLLDATLTATRIRDNPQEEIVVLTTDLMLAGEDSANEARFFSQTSEALGTQQAPPVPRISLVFVEVVGSSSCGVGGGGVSGSLTGWNELQRLREGAKDRGRAFAL 600
            VDVQENGYGDGFGWKFL+DATLTATRIR NP EE                  ARFFSQTSEALGTQQ PPV RISLVFVEVVGSSSC VGG G S SLTGWN LQRLREGAKDRGRAFAL
Sbjct:    7 VDVQENGYGDGFGWKFLIDATLTATRIRGNPLEE------------------ARFFSQTSEALGTQQGPPVRRISLVFVEVVGSSSCSVGGAGASDSLTGWNGLQRLREGAKDRGRAFAL 108
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7206.15387.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGY8_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.110e-11
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:  241 VDVQENGYGDGFGWKFLLDATLTATRIRDNPQEE 342
            VDVQENGYGDGFGWKFL+DATLTATRIR NP +E
Sbjct:    7 VDVQENGYGDGFGWKFLIDATLTATRIRGNPLKE 40
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7206.15387.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized6.080e-9989.76protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.470e-4776.67protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
Uncharacterized1.110e-1188.24protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7206contigE_fasciculatus_S2_contig7206:181..3002 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size759
Hectar predicted targeting categoryother localisation
Exons5
Cds size759
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842383.9476092-CDS-E_fasciculatus_S2_contig7206:180..3391696842383.9476092-CDS-E_fasciculatus_S2_contig7206:180..339Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7206 181..339 -
1696842383.9583712-CDS-E_fasciculatus_S2_contig7206:889..11471696842383.9583712-CDS-E_fasciculatus_S2_contig7206:889..1147Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7206 890..1147 -
1696842383.9684365-CDS-E_fasciculatus_S2_contig7206:1648..17501696842383.9684365-CDS-E_fasciculatus_S2_contig7206:1648..1750Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7206 1649..1750 -
1696842383.9786642-CDS-E_fasciculatus_S2_contig7206:2346..25101696842383.9786642-CDS-E_fasciculatus_S2_contig7206:2346..2510Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7206 2347..2510 -
1696842383.9930174-CDS-E_fasciculatus_S2_contig7206:2926..30021696842383.9930174-CDS-E_fasciculatus_S2_contig7206:2926..3002Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7206 2927..3002 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7206.15387.1prot_E_fasciculatus_S2_contig7206.15387.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7206 181..3002 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7206.15387.1

>prot_E_fasciculatus_S2_contig7206.15387.1 ID=prot_E_fasciculatus_S2_contig7206.15387.1|Name=mRNA_E_fasciculatus_S2_contig7206.15387.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=253bp
MIVVLDSRRPSSLAVDVNLRLEVFLENSKQLLSRCCALGRVQLVDAPSGF
IVPTSSQGKMVQVVCRGRPVTATDVSCARLVDVQENGYGDGFGWKFLLDA
TLTATRIRDNPQEEIVVLTTDLMLAGEDSANEARFFSQTSEALGTQQAPP
VPRISLVFVEVVGSSSCGVGGGGVSGSLTGWNELQRLREGAKDRGRAFAL
DLIDNTPAMFDSQLRCWLRDSSPRQACSLRLPATETFSGVVIEVQYIGQD
RA*
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mRNA from alignment at E_fasciculatus_S2_contig7206:181..3002-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7206.15387.1 ID=mRNA_E_fasciculatus_S2_contig7206.15387.1|Name=mRNA_E_fasciculatus_S2_contig7206.15387.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2822bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7206:181..3002- (Ectocarpus fasciculatus EfasUO2)
ATGATCGTCGTGCTGGATTCCCGGCGGCCATCGTCTCTGGCCGTCGATGT
CAACCTGCGGTTGGAGGTGTTTCTAGGTATGGCTTTGGTTCCCGTGCAGG
AAGAAGAGCAATATCTATCTGCAGCGCGTTCTGATGCGGCTTTGCCTGCC
AGGCTCTGCTACACGGCAGACAAACAGCAAGACGACAAAGTCTGGGGCGT
TTAGCTGGGTTGGGTGGATGGGGAAGGCCGTGTTCGTAATGCTACCTGAT
TGACCCTGCCGAACCTATTTCCTCGAGAAAGGTTGCCCATTCTTTATTTA
GCAATCTTGGACATGACGACATCACATGTTCCCCGTTTGAATTTCAAACT
TCGCAGCACGTCAGCTTGCGTGAGAGCTCGCCTTTCAACACACCAACACG
CGCCAGTTGTAGTCACTGCTTGGTAAACGTACACCCAAGGGTGGCCTGTG
CCTAGGCTCACCGCTGTTTTCAATCCACTTGCGCTGCTGCAGAGAACTCG
AAGCAGCTCCTGTCGCGTTGCTGCGCTCTGGGCAGAGTGCAGCTCGTGGA
TGCCCCCTCCGGCTTCATCGTCCCCACCAGCAGCCAGGGCAAGATGGTGC
AGGTTGTCTGCCGAGGAAGGCCCGTCACCGCCACAGACGTGTCGTGCGCG
CGATTGGTACGTTCCCACCTCGGGGCCCCTCGTGTCATCCTCCACACTCT
GTATACCTCACGCCGTACCCGGTGTGTGTGCTACAGTATGTAGACTAGAT
AGAATCGGTTTGTGTGGGAGGGGTGAAATCTCCCGACGAAAATGTGAAAA
TGTGCGGATGGTGTGTACCAAAGCCTTTGTGTGCCGTGTCCGACAGAGGT
GTACACTAGGCACACGTGCAGACGTACCGCTGTAGGTGACCCAGTACGGC
ATCCCCCACACGGTGAGGGACTGCATCCTTGTAGCCAACGGTATTGCGGC
ATGCCAGCTGAACTCAAACGGACGTCGGTGCGGGGCGCTTCCCTCCTCCT
GTGTGTGTTTGCACGAGGGTGGCCGCCACAACCTCCACCCCGTCGCGCAA
GTGCAGCAAACAGGAGAGCCTTCGGCAAGGAAGCGTTCATCGTCAAAAAG
GACAGGGCACTCCTGGCTGGCCAGCTCATTGCAGCTCCCGCGCTCCGCTC
TCCCCCTTCTCCCCTGTAAATGGAGGCCGCGCCAAAGTTCCCCTGGAAAT
CAAAACCACCTCGCGCCTCTGGTCGTGTTGATGCCTACCTCCCAACCCAC
AGGTAGACGTGCAGGAGAACGGCTACGGCGACGGGTTCGGGTGGAAGTTT
CTGCTGGACGCCACTCTCACCGCGACCAGGATCCGAGATAACCCTCAGGA
AGAGGTGACTCCCACGCCTGCCCCCCCATACGATTGAGCATGGCCCCAAA
GAAGGAAAACGTGGTGATGGCAGCGTGCGGGGGACCTACAGCAATCGGGT
TTCGTGCGTGTGTAGAACATGTCTATCCCGCATTCTCCAAGTTCTATGTC
TCCCCACCAAGCGAATGTTGTGCGCGCCGAGAGAGGGTAGCACGAGAATC
ATCGCGCCAAGAGCTTTTTTCCGAAGTTGGTGTTGGCGAAGGGTCGGCGG
CTTGTAGTTGCTTGCCAAGGTTGTCCATGGTTGTATCGAGGTTCGGAAAC
CGAACCTCGTCGGAAGGGATAATGCTGCACCTACCCTTTCTGTTTGCCCT
GTTTGACACATGCTCCCGACTGGTGCAATGAAAATCATATGCAACAGAGA
GGCACCCAACCCAAGCTCTGCACACCGCTAACGCGCGCTACTTCCCCCCC
TGGAACGTTCGGTAACCACGCGTGCGTACAATCGAAAACATACAACACAC
ACCAGATAGTCGTCCTCACGACTGATCTCATGCTCGCGGGCGAAGACTCT
GCGAACGAGGCTCGCTTCTTCTCCCAGACCTCCGAGGCCCTGGGGACGCA
GCAGGCCCCGCCCGTGCCTCGCATCTCGCTGGTGTTCGTGGAGGTGGTGG
GCTCTTCTTCTTGCGGCGTTGGCGGTGGGGGGGTGTCGGGCTCGCTGACC
GGGTGGAACGAACTGCAACGGCTTCGGGAGGGGGCCAAGGATCGGGGCAG
GGCGTTCGCGCTCGTAAGTTTTTTAGTTTGTTTGTCACAACGGGACCCAC
GTGCGTGAGTGAGACATTGACTGGGTTCTGGTCTCTCGTTCTGCTTCCCC
CTCCTCCCCCCTCATTCTCTCTTTCTCTCTTTCTGTCGTTCTAAACTTCC
ACCGAGTTGCCTGCTGCAAATCAGTAACATTGTTTGCGCACAAGCAAGCT
TCGTGCCTAATGAACGAGCTTCAGCGTCTTTGAACTGGAATAGACGATAT
AGGGGGCAGGAGGCGCTACATAGACATGATACAATGGTTGCTCGGCCATC
TCGTGGGGGGCACCGTCACATTATTACATACTAAGGGTACCCGTGATACC
CTCCGCGCGTGTTGCTCCGACCGCCGAAAACATGCATGTTTCAGACACCG
TAACCATCGGGAGGAAAAAACAAGAGCGGTGATTGTCATGTGAATATACA
ATTCACACAACGCTTCACAGACGTCAGATGTCAGATACCCTTCTGCTTCC
ACTCAGTTGCTGCTGTGCCGTGCCTGGCCGTCCGTCTGTCTGTACCCCGA
TGGCCTGCGACAGGACCTCATCGACAACACGCCGGCCATGTTCGACTCCC
AGCTTCGGTGCTGGCTGAGAGACTCTTCCCCGCGGCAGGCCTGCTCTCTC
CGCTTGCCGGCGACGGAAACCTTCAGCGGCGTCGTCATCGAGGTACAGTA
CATCGGTCAAGATAGGGCCTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7206:181..3002-

>mRNA_E_fasciculatus_S2_contig7206.15387.1 ID=mRNA_E_fasciculatus_S2_contig7206.15387.1|Name=mRNA_E_fasciculatus_S2_contig7206.15387.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=759bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7206:181..3002- (Ectocarpus fasciculatus EfasUO2)
ATGATCGTCGTGCTGGATTCCCGGCGGCCATCGTCTCTGGCCGTCGATGT
CAACCTGCGGTTGGAGGTGTTTCTAGAGAACTCGAAGCAGCTCCTGTCGC
GTTGCTGCGCTCTGGGCAGAGTGCAGCTCGTGGATGCCCCCTCCGGCTTC
ATCGTCCCCACCAGCAGCCAGGGCAAGATGGTGCAGGTTGTCTGCCGAGG
AAGGCCCGTCACCGCCACAGACGTGTCGTGCGCGCGATTGGTAGACGTGC
AGGAGAACGGCTACGGCGACGGGTTCGGGTGGAAGTTTCTGCTGGACGCC
ACTCTCACCGCGACCAGGATCCGAGATAACCCTCAGGAAGAGATAGTCGT
CCTCACGACTGATCTCATGCTCGCGGGCGAAGACTCTGCGAACGAGGCTC
GCTTCTTCTCCCAGACCTCCGAGGCCCTGGGGACGCAGCAGGCCCCGCCC
GTGCCTCGCATCTCGCTGGTGTTCGTGGAGGTGGTGGGCTCTTCTTCTTG
CGGCGTTGGCGGTGGGGGGGTGTCGGGCTCGCTGACCGGGTGGAACGAAC
TGCAACGGCTTCGGGAGGGGGCCAAGGATCGGGGCAGGGCGTTCGCGCTC
GACCTCATCGACAACACGCCGGCCATGTTCGACTCCCAGCTTCGGTGCTG
GCTGAGAGACTCTTCCCCGCGGCAGGCCTGCTCTCTCCGCTTGCCGGCGA
CGGAAACCTTCAGCGGCGTCGTCATCGAGGTACAGTACATCGGTCAAGAT
AGGGCCTGA
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