mRNA_E_fasciculatus_S2_contig7201.15384.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7201.15384.1
Unique NamemRNA_E_fasciculatus_S2_contig7201.15384.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7201.15384.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7201contigE_fasciculatus_S2_contig7201:6327..7777 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1451
Hectar predicted targeting categoryother localisation
Exons1
Cds size936
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842383.6460242-UTR-E_fasciculatus_S2_contig7201:6326..68411696842383.6460242-UTR-E_fasciculatus_S2_contig7201:6326..6841Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7201 6327..6841 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842383.658799-CDS-E_fasciculatus_S2_contig7201:6841..77771696842383.658799-CDS-E_fasciculatus_S2_contig7201:6841..7777Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7201 6842..7777 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7201.15384.1prot_E_fasciculatus_S2_contig7201.15384.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7201 6842..7777 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7201.15384.1

>prot_E_fasciculatus_S2_contig7201.15384.1 ID=prot_E_fasciculatus_S2_contig7201.15384.1|Name=mRNA_E_fasciculatus_S2_contig7201.15384.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=312bp
MNPLHKTRDSGKNTHSLFHEIAKTRGSGTKTHCPSHEIAKTGGSGKKTHL
ILPLMKSLRQRALHTSRSFLSRETIKSDLQLDTHCTTKSVQNRQQTPTET
LDLLALQTVLSSRLTEGQATPKLHLQGVKKTSLPNGRASRRWGNVEWWTA
VLKPREQPRTQASARDGEMAPPLYRIPNLHRSTTKGVHGLPHRIPYRIPQ
ETERWHPLYTEFQSPIVPQTKGVHGLPHRIPYRIPQETERWHPLYTEFQS
SIVQQTNCASTKDVGWGNISSTYLSGLFRAHLVMEQSNCERLSRGGASLQ
LLRYTVRYTVR*
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mRNA from alignment at E_fasciculatus_S2_contig7201:6327..7777+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7201.15384.1 ID=mRNA_E_fasciculatus_S2_contig7201.15384.1|Name=mRNA_E_fasciculatus_S2_contig7201.15384.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1451bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7201:6327..7777+ (Ectocarpus fasciculatus EfasUO2)
CGGCCGTTGCACGCCGCAAGCCTTCATCGGATACTACTCCCCTCCGAAAA
ACACCGACCACATAAAAAAACTATTTATTGTTCGCTATGTTATGCACCGA
GACACGAGGAAACGGCGGATACCATTCTCCTGGTTTCTGTGCAGACGGTC
GCGGCGTGGGGCACCCGGCAGACATACCCGCCGTCGCGGCTCCCGCAAGA
GACCACCTGGCGGCTCCGGCCGCCATCTCCGCCCACCGGTCCGCCCGCGT
CCTGCCGCCCCCCCCCTTGGCGTGACCTCGATTCAATCGCCATCTGCGAG
TGGGGCGAGCGCTCCCTCCCACAACACGGAGCTCGTCATCTGTGCGACAT
GTTGGGGCGGACGGGCCAAGTCCTACACGCCTTTCGGGAAAAACACTCAA
GTCTTTTTTTCATTAAATCGCTGAGACTGGAGGCTCTGGGACAAAAACTT
GTTATCCCTTCCATGAAACCGGTACGACTACGCGCCTTCCGGGACAAAAA
AACAACCTCCCTTTAATGAACCCGCTACATAAGACCAGAGACTCTGGGAA
AAATACTCATTCTCTCTTTCATGAAATCGCTAAGACCAGAGGCTCTGGGA
CAAAAACCCATTGTCCCTCCCATGAAATCGCGAAGACTGGAGGCTCTGGG
AAAAAAACTCATCTCATTCTCCCTTTGATGAAATCGCTCAGACAACGGGC
ACTGCACACATCGAGGAGCTTCTTGAGCCGCGAAACCATAAAATCTGATC
TCCAACTCGACACACACTGCACCACAAAATCCGTACAAAACAGACAACAA
ACCCCGACAGAAACACTCGATTTGTTGGCGTTGCAAACTGTCCTCAGCAG
CAGGCTCACAGAGGGACAGGCCACTCCGAAATTGCACTTGCAGGGGGTCA
AGAAAACGTCACTTCCAAATGGGAGAGCGTCACGACGTTGGGGTAACGTG
GAGTGGTGGACCGCGGTCCTGAAACCTCGAGAACAACCACGGACACAGGC
TTCCGCAAGAGACGGAGAGATGGCACCCCCTCTATACCGAATTCCAAACC
TCCATCGTTCCACAACCAAGGGGGTACATGGCTTACCGCACCGTATACCG
TACCGTATACCGCAAGAGACGGAGAGATGGCACCCCCTCTATACCGAATT
TCAAAGCCCGATCGTTCCACAAACCAAGGGGGTACATGGCTTACCGCACC
GTATACCGTACCGTATACCGCAAGAGACGGAGAGATGGCACCCCCTCTAT
ACCGAATTTCAAAGTTCGATCGTTCAACAAACCAACTGTGCCAGCACCAA
AGATGTTGGTTGGGGAAACATCTCGTCGACGTATCTATCGGGTTTGTTCC
GCGCCCACTTGGTTATGGAGCAATCGAACTGTGAACGTCTGTCTAGGGGG
GGTGCATCTCTCCAGCTCTTGCGGTATACGGTACGGTATACGGTGCGGTA
A
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7201:6327..7777+

>mRNA_E_fasciculatus_S2_contig7201.15384.1 ID=mRNA_E_fasciculatus_S2_contig7201.15384.1|Name=mRNA_E_fasciculatus_S2_contig7201.15384.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=936bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7201:6327..7777+ (Ectocarpus fasciculatus EfasUO2)
ATGAACCCGCTACATAAGACCAGAGACTCTGGGAAAAATACTCATTCTCT
CTTTCATGAAATCGCTAAGACCAGAGGCTCTGGGACAAAAACCCATTGTC
CCTCCCATGAAATCGCGAAGACTGGAGGCTCTGGGAAAAAAACTCATCTC
ATTCTCCCTTTGATGAAATCGCTCAGACAACGGGCACTGCACACATCGAG
GAGCTTCTTGAGCCGCGAAACCATAAAATCTGATCTCCAACTCGACACAC
ACTGCACCACAAAATCCGTACAAAACAGACAACAAACCCCGACAGAAACA
CTCGATTTGTTGGCGTTGCAAACTGTCCTCAGCAGCAGGCTCACAGAGGG
ACAGGCCACTCCGAAATTGCACTTGCAGGGGGTCAAGAAAACGTCACTTC
CAAATGGGAGAGCGTCACGACGTTGGGGTAACGTGGAGTGGTGGACCGCG
GTCCTGAAACCTCGAGAACAACCACGGACACAGGCTTCCGCAAGAGACGG
AGAGATGGCACCCCCTCTATACCGAATTCCAAACCTCCATCGTTCCACAA
CCAAGGGGGTACATGGCTTACCGCACCGTATACCGTACCGTATACCGCAA
GAGACGGAGAGATGGCACCCCCTCTATACCGAATTTCAAAGCCCGATCGT
TCCACAAACCAAGGGGGTACATGGCTTACCGCACCGTATACCGTACCGTA
TACCGCAAGAGACGGAGAGATGGCACCCCCTCTATACCGAATTTCAAAGT
TCGATCGTTCAACAAACCAACTGTGCCAGCACCAAAGATGTTGGTTGGGG
AAACATCTCGTCGACGTATCTATCGGGTTTGTTCCGCGCCCACTTGGTTA
TGGAGCAATCGAACTGTGAACGTCTGTCTAGGGGGGGTGCATCTCTCCAG
CTCTTGCGGTATACGGTACGGTATACGGTGCGGTAA
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