mRNA_E_fasciculatus_S2_contig720.15382.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig720.15382.1
Unique NamemRNA_E_fasciculatus_S2_contig720.15382.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig720.15382.1 vs.
Match: Endo-1,3(4)-beta-glucanase (n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFJ7_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 1.720e-47
Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 1
Query:    1 HFHYSYVINVAAVLAYLRPSWTDDTKVAWVNTLIRDVNSPDEARRADVSGRISLSDAYFPQFRSFDWFSGHSWARGLLFAYDGKDQ 258
            HFHYSYVINVAAVLAYLRPSW D+TKVAWVNTLIRDVNSPD+AR AD+S R SLSDAYFPQFRSFDWFSGHSWARGLLFAYDGKDQ
Sbjct:  300 HFHYSYVINVAAVLAYLRPSWIDNTKVAWVNTLIRDVNSPDQARSADMSRRFSLSDAYFPQFRSFDWFSGHSWARGLLFAYDGKDQ 385          
BLAST of mRNA_E_fasciculatus_S2_contig720.15382.1 vs.
Match: Endo-1,3(4)-beta-glucanase (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGU3_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 2.750e-39
Identity = 71/86 (82.56%), Postives = 73/86 (84.88%), Query Frame = 1
Query:    1 HFHYSYVINVAAVLAYLRPSWTDDTKVAWVNTLIRDVNSPDEARRADVSGRISLSDAYFPQFRSFDWFSGHSWARGLLFAYDGKDQ 258
            HFHYSYVINVAAVLAYLRPSW D+TKVAWVNTLIRDVNSPD+            SDAYFPQFRSFDWFSGHSWARGLLFAYDGKDQ
Sbjct:  492 HFHYSYVINVAAVLAYLRPSWIDNTKVAWVNTLIRDVNSPDQ------------SDAYFPQFRSFDWFSGHSWARGLLFAYDGKDQ 565          
BLAST of mRNA_E_fasciculatus_S2_contig720.15382.1 vs.
Match: Endo-1,3(4)-beta-glucanase (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL13_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 2.090e-32
Identity = 61/86 (70.93%), Postives = 66/86 (76.74%), Query Frame = 1
Query:    1 HFHYSYVINVAAVLAYLRPSWTDDTKVAWVNTLIRDVNSPDEARRADVSGRISLSDAYFPQFRSFDWFSGHSWARGLLFAYDGKDQ 258
            HFHYSYVIN AAVLA+LRPSW     VAWVNTLIRDVN P++             DA+FPQFRSFDWFSGHSWARGLLFA+DGKDQ
Sbjct:  493 HFHYSYVINAAAVLAHLRPSWATSDNVAWVNTLIRDVNDPNKY------------DAFFPQFRSFDWFSGHSWARGLLFAFDGKDQ 566          
BLAST of mRNA_E_fasciculatus_S2_contig720.15382.1 vs.
Match: Endo-1,3(4)-beta-glucanase (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA2_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 9.210e-29
Identity = 53/86 (61.63%), Postives = 63/86 (73.26%), Query Frame = 1
Query:    1 HFHYSYVINVAAVLAYLRPSWTDDTKVAWVNTLIRDVNSPDEARRADVSGRISLSDAYFPQFRSFDWFSGHSWARGLLFAYDGKDQ 258
            HFHYSY+++ AA LA+LRP W D     WV++L+RDVNSP++             D YFPQFRSFDWFSGHSWARGLLF+YDGKDQ
Sbjct:  491 HFHYSYLLHAAAALAHLRPEWADSDNKNWVDSLVRDVNSPNK------------EDEYFPQFRSFDWFSGHSWARGLLFSYDGKDQ 564          
BLAST of mRNA_E_fasciculatus_S2_contig720.15382.1 vs.
Match: Endo-1,3(4)-beta-glucanase (n=1 Tax=Heterodermia speciosa TaxID=116794 RepID=A0A8H3HZR9_9LECA)

HSP 1 Score: 100 bits (248), Expect = 1.480e-22
Identity = 43/86 (50.00%), Postives = 59/86 (68.60%), Query Frame = 1
Query:    1 HFHYSYVINVAAVLAYLRPSWTDDTKVAWVNTLIRDVNSPDEARRADVSGRISLSDAYFPQFRSFDWFSGHSWARGLLFAYDGKDQ 258
            HFHY+Y ++ A+++AYL P+W   T  AWVNTLIRD  +P            S++D YFPQ R+FDW+ GHSWA+GL  ++DGKD+
Sbjct:  566 HFHYAYFVHTASIIAYLDPTWLTATNKAWVNTLIRDAANP------------SVADPYFPQSRAFDWYHGHSWAKGLFDSFDGKDE 639          
BLAST of mRNA_E_fasciculatus_S2_contig720.15382.1 vs.
Match: Endo-1,3(4)-beta-glucanase (n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GE38_VITBC)

HSP 1 Score: 93.2 bits (230), Expect = 4.060e-20
Identity = 51/102 (50.00%), Postives = 64/102 (62.75%), Query Frame = 1
Query:    1 HFHYSYVINVAAVLAYLRPSWTDD-TKVAWVNTLIRDVNSPDEARRA----DV----SGRISLSDAYFPQFRSFDWFSGHSWARGLLFAYDGKDQVGMARGL 279
            H+H+ Y I  AAVLA+L PSW +      +V  LIRDV++P  A  A    DV    SG  S +D YFP FR FDWF GHSWA+G+L A DGKDQ  ++ G+
Sbjct:  801 HYHFGYHITAAAVLAHLNPSWVEKRANRDFVWALIRDVSNPSAAAGARATSDVADTKSGEGSGADVYFPPFRYFDWFDGHSWAKGILAAADGKDQESVSEGV 902          
BLAST of mRNA_E_fasciculatus_S2_contig720.15382.1 vs.
Match: Endo-1,3(4)-beta-glucanase (n=1 Tax=Massariosphaeria phaeospora TaxID=100035 RepID=A0A7C8MVA1_9PLEO)

HSP 1 Score: 92.8 bits (229), Expect = 5.470e-20
Identity = 46/87 (52.87%), Postives = 54/87 (62.07%), Query Frame = 1
Query:    1 HFHYSYVINVAAVLAYLRPSWTDD-TKVAWVNTLIRDVNSPDEARRADVSGRISLSDAYFPQFRSFDWFSGHSWARGLLFAYDGKDQ 258
            HFHY Y +  AAV+ YL P+W D  T  AW+NTL+RD  +P            S SD YFP  RSFDWF GHSWA+GL  + DGKDQ
Sbjct:  590 HFHYGYFLWTAAVIGYLDPAWMDQGTNRAWINTLVRDFANP------------STSDPYFPFQRSFDWFHGHSWAKGLFESGDGKDQ 664          
BLAST of mRNA_E_fasciculatus_S2_contig720.15382.1 vs.
Match: Endo-1,3(4)-beta-glucanase (n=1 Tax=Amniculicola lignicola CBS 123094 TaxID=1392246 RepID=A0A6A5WF92_9PLEO)

HSP 1 Score: 92.8 bits (229), Expect = 5.510e-20
Identity = 43/87 (49.43%), Postives = 55/87 (63.22%), Query Frame = 1
Query:    1 HFHYSYVINVAAVLAYLRPSWTD-DTKVAWVNTLIRDVNSPDEARRADVSGRISLSDAYFPQFRSFDWFSGHSWARGLLFAYDGKDQ 258
            HFHY Y +  AAV++YL P+W +     AWVN L+RD  +P            S +D YFPQ RSFDW+ GHSWA+GL  ++DGKDQ
Sbjct:  581 HFHYGYFVYTAAVISYLDPAWLEVGQNKAWVNMLVRDYANP------------SANDPYFPQLRSFDWYHGHSWAKGLFESFDGKDQ 655          
BLAST of mRNA_E_fasciculatus_S2_contig720.15382.1 vs.
Match: Endo-1,3(4)-beta-glucanase (n=3 Tax=Aspergillus TaxID=5052 RepID=A0A1L9UU14_ASPBC)

HSP 1 Score: 92.8 bits (229), Expect = 5.520e-20
Identity = 41/86 (47.67%), Postives = 54/86 (62.79%), Query Frame = 1
Query:    1 HFHYSYVINVAAVLAYLRPSWTDDTKVAWVNTLIRDVNSPDEARRADVSGRISLSDAYFPQFRSFDWFSGHSWARGLLFAYDGKDQ 258
            HFHY Y I+ AA++  L PSW  D+  AWVN L+RD            +G  + +D YFP  RSFDW+ GHSWA+GL  ++DGKD+
Sbjct:  735 HFHYGYFIHAAAIIGSLDPSWLSDSNKAWVNMLVRD------------AGNSAANDPYFPFSRSFDWYHGHSWAKGLFESFDGKDE 808          
BLAST of mRNA_E_fasciculatus_S2_contig720.15382.1 vs.
Match: Endo-1,3(4)-beta-glucanase (n=1 Tax=Peltaster fructicola TaxID=286661 RepID=A0A6H0XWW1_9PEZI)

HSP 1 Score: 92.4 bits (228), Expect = 7.550e-20
Identity = 43/86 (50.00%), Postives = 53/86 (61.63%), Query Frame = 1
Query:    1 HFHYSYVINVAAVLAYLRPSWTDDTKVAWVNTLIRDVNSPDEARRADVSGRISLSDAYFPQFRSFDWFSGHSWARGLLFAYDGKDQ 258
            HFHY Y +  AAV+ YL P+W  D+  AWVN L+RD  +P +            SD YFP  RSFDW+ GHSWA+GL  + DGKDQ
Sbjct:  801 HFHYGYFVYTAAVIGYLDPTWLTDSNKAWVNMLVRDYANPVD------------SDPYFPFSRSFDWYHGHSWAKGLFESADGKDQ 874          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig720.15382.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Endo-1,3(4)-beta-glucanase1.720e-4791.86n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 R... [more]
Endo-1,3(4)-beta-glucanase2.750e-3982.56n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Endo-1,3(4)-beta-glucanase2.090e-3270.93n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8... [more]
Endo-1,3(4)-beta-glucanase9.210e-2961.63n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Endo-1,3(4)-beta-glucanase1.480e-2250.00n=1 Tax=Heterodermia speciosa TaxID=116794 RepID=A... [more]
Endo-1,3(4)-beta-glucanase4.060e-2050.00n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepI... [more]
Endo-1,3(4)-beta-glucanase5.470e-2052.87n=1 Tax=Massariosphaeria phaeospora TaxID=100035 R... [more]
Endo-1,3(4)-beta-glucanase5.510e-2049.43n=1 Tax=Amniculicola lignicola CBS 123094 TaxID=13... [more]
Endo-1,3(4)-beta-glucanase5.520e-2047.67n=3 Tax=Aspergillus TaxID=5052 RepID=A0A1L9UU14_AS... [more]
Endo-1,3(4)-beta-glucanase7.550e-2050.00n=1 Tax=Peltaster fructicola TaxID=286661 RepID=A0... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig720contigE_fasciculatus_S2_contig720:27947..28520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score146.4
Seed ortholog evalue6.8e-33
Seed eggNOG ortholog2880.D7FGU3
Model size279
KEGG koko:K01180
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.chitin catabolic process
EggNOG OGsCOG5498@1,KOG2254@2759
EC3.2.1.6
Cds size279
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842383.4973223-CDS-E_fasciculatus_S2_contig720:27946..281081696842383.4973223-CDS-E_fasciculatus_S2_contig720:27946..28108Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig720 27947..28108 +
1696842383.5102077-CDS-E_fasciculatus_S2_contig720:28403..285201696842383.5102077-CDS-E_fasciculatus_S2_contig720:28403..28520Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig720 28404..28520 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig720.15382.1prot_E_fasciculatus_S2_contig720.15382.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig720 27947..28520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig720.15382.1

>prot_E_fasciculatus_S2_contig720.15382.1 ID=prot_E_fasciculatus_S2_contig720.15382.1|Name=mRNA_E_fasciculatus_S2_contig720.15382.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=93bp
HFHYSYVINVAAVLAYLRPSWTDDTKVAWVNTLIRDVNSPDEARRADVSG
RISLSDAYFPQFRSFDWFSGHSWARGLLFAYDGKDQVGMARGL
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mRNA from alignment at E_fasciculatus_S2_contig720:27947..28520+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig720.15382.1 ID=mRNA_E_fasciculatus_S2_contig720.15382.1|Name=mRNA_E_fasciculatus_S2_contig720.15382.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=574bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig720:27947..28520+ (Ectocarpus fasciculatus EfasUO2)
CACTTCCATTACTCGTACGTGATAAACGTCGCGGCTGTCTTGGCCTACCT TCGTCCGAGCTGGACCGACGACACGAAGGTCGCTTGGGTCAACACCTTGA TCCGTGACGTAAACAGTCCCGACGAGGCAAGAAGAGCGGATGTGTCGGGA CGAATTTCTCTCGTTTTCTTTGACATGAATGTGTTGGTGAATATCATAAA ATCGGTTATTGCCCCACATTTATCTGGCCGAGGATACGGGCAAGCAGGTT GCGTGGCGAACACCAAAACCTCGAGGGTCAGCAGGAGAACACACCGCATT CCTCACGATCCTGGTCAGACAACGGTTGCTCTGCCCCTTTGGCGCCGGTC CTGGTGCTTGTACTGGCTACCCATTGTCACTTTCCTGTCGCCTTGACAAA AAAATATTATCCGTGTCTTCCCGGTTTTCGTCCCGTGGATGCCGGTCGCT TCGGCAGTCCGACGCGTACTTCCCTCAGTTCCGTTCGTTCGACTGGTTCA GCGGGCACAGCTGGGCCAGAGGGCTCCTCTTCGCCTACGACGGGAAGGAT CAGGTTGGCATGGCTCGTGGGTTA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig720:27947..28520+

>mRNA_E_fasciculatus_S2_contig720.15382.1 ID=mRNA_E_fasciculatus_S2_contig720.15382.1|Name=mRNA_E_fasciculatus_S2_contig720.15382.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=279bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig720:27947..28520+ (Ectocarpus fasciculatus EfasUO2)
CACTTCCATTACTCGTACGTGATAAACGTCGCGGCTGTCTTGGCCTACCT
TCGTCCGAGCTGGACCGACGACACGAAGGTCGCTTGGGTCAACACCTTGA
TCCGTGACGTAAACAGTCCCGACGAGGCAAGAAGAGCGGATGTGTCGGGA
CGAATTTCTCTCTCCGACGCGTACTTCCCTCAGTTCCGTTCGTTCGACTG
GTTCAGCGGGCACAGCTGGGCCAGAGGGCTCCTCTTCGCCTACGACGGGA
AGGATCAGGTTGGCATGGCTCGTGGGTTA
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