mRNA_E_fasciculatus_S2_contig72.15381.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig72.15381.1
Unique NamemRNA_E_fasciculatus_S2_contig72.15381.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig72.15381.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig72contigE_fasciculatus_S2_contig72:52406..52849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size406
Hectar predicted targeting categoryother localisation
Exons2
Cds size213
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842382.7498868-UTR-E_fasciculatus_S2_contig72:52405..525521696842382.7498868-UTR-E_fasciculatus_S2_contig72:52405..52552Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig72 52406..52552 +
1696842382.7860966-UTR-E_fasciculatus_S2_contig72:52803..528491696842382.7860966-UTR-E_fasciculatus_S2_contig72:52803..52849Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig72 52804..52849 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842382.7649033-CDS-E_fasciculatus_S2_contig72:52552..527201696842382.7649033-CDS-E_fasciculatus_S2_contig72:52552..52720Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig72 52553..52720 +
1696842382.7756927-CDS-E_fasciculatus_S2_contig72:52758..528031696842382.7756927-CDS-E_fasciculatus_S2_contig72:52758..52803Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig72 52759..52803 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig72.15381.1prot_E_fasciculatus_S2_contig72.15381.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig72 52553..52803 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig72.15381.1

>prot_E_fasciculatus_S2_contig72.15381.1 ID=prot_E_fasciculatus_S2_contig72.15381.1|Name=mRNA_E_fasciculatus_S2_contig72.15381.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=71bp
MGRGGEGGRGGGVDFQFSSEYFLALPTNEVIYLVKLEDVDWKSPPEIIIT
VSLRYYLVSGVRRGLFVCAK*
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mRNA from alignment at E_fasciculatus_S2_contig72:52406..52849+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig72.15381.1 ID=mRNA_E_fasciculatus_S2_contig72.15381.1|Name=mRNA_E_fasciculatus_S2_contig72.15381.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=444bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig72:52406..52849+ (Ectocarpus fasciculatus EfasUO2)
ATGCCCGATAAGGTTGCAAGAGCCGGAGGTCACCGGTCAGGTTCGCATTT
CGAGAGAGGTCCCAAAAAAGCAGCCAGAGGCGTACATCCCAGGTCCAAAT
TATTAATTTAATAACGTCCCGCAGGAACCCCTATTTTTTTTTCGGGTATG
GGGCGCGGTGGGGAAGGCGGGAGGGGGGGGGGGGTGGATTTCCAGTTCTC
TTCAGAATACTTTCTTGCGTTACCTACAAACGAAGTTATCTACCTGGTTA
AATTGGAAGACGTAGATTGGAAATCCCCACCGGAGATTATTATTACAGTG
TCGCTCAGGTATTATGTAGGCGTGTTGTCAGGCGGATACATACAAATGAA
TAGCTTGTTAGTGGGGTTCGAAGAGGTTTATTTGTTTGTGCAAAATAAGA
ATGAGAAGATTAACTCCGTCGTGCGGGACACGAAGAATTCGTAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig72:52406..52849+

>mRNA_E_fasciculatus_S2_contig72.15381.1 ID=mRNA_E_fasciculatus_S2_contig72.15381.1|Name=mRNA_E_fasciculatus_S2_contig72.15381.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=213bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig72:52406..52849+ (Ectocarpus fasciculatus EfasUO2)
ATGGGGCGCGGTGGGGAAGGCGGGAGGGGGGGGGGGGTGGATTTCCAGTT
CTCTTCAGAATACTTTCTTGCGTTACCTACAAACGAAGTTATCTACCTGG
TTAAATTGGAAGACGTAGATTGGAAATCCCCACCGGAGATTATTATTACA
GTGTCGCTCAGGTATTATCTTGTTAGTGGGGTTCGAAGAGGTTTATTTGT
TTGTGCAAAATAA
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