mRNA_E_fasciculatus_S2_contig72.15377.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig72.15377.1
Unique NamemRNA_E_fasciculatus_S2_contig72.15377.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig72.15377.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKS6_ECTSI)

HSP 1 Score: 813 bits (2100), Expect = 4.780e-293
Identity = 477/545 (87.52%), Postives = 494/545 (90.64%), Query Frame = 1
Query:    1 MLRLSLPATPGCRLLAPLPMVSVWRAMFFSLFVVKALAFVPSSTSRIAYSTPPAAARTSGQ-PAHEGYSSRGVVAPSRLPASRSMWGACMSAAGRSTDVPGDGSACVVERDVCTTVDSCNTGTGIAGTTGLASGGETGGDGRNGRRLLSIPPLLVAVATGRGLAATAAVTGGRIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--YQQPRAGRDIYGSEGSRFHIRFDGGGGGRRSTRARFNPYDGDAPSTSITPGDVAMVGGVSAAVAAVQRYNRRRFLDEEGYRQRPSAPLPPRSSRGGSSQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWLGGTGSVKTYTSEGRSNSRGKKTSPTSRAKRDFNRAAMRERSKWERETVSNTPDRGFSSSTAPSWGGFSAQKSGTYAVATLIVAWSGLNSTPPRAEPRRGGWFTRDSRDRDEDRGVEFSVVNSRQSALTLLEWLGDEAAEGRGENVLDVEVLWTPADPADSLDREDLDTKWPELRAL 1626
            MLRLSLPATPGC  L+PLPMVSVWR MFFSLFVV+ALAFVP    RIA+S PPA+ RTSGQ P HE YSSRG+VA S+LPASRS+WG  MSAAG S DVPGD +ACVV RDVCT VD+ N GTG AGTTGL  G E GGDGR+GRRLL+IPPLLVAVATGR LA           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   YQ+PRAGRDIYGSEGSRFHIRFDGG GGRRSTRARFNPYDGDAPSTSITPGDVAM+GGVSAAVAAVQRYNR+RF+DEEG  QRPSAPLPPRS RGGSSQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWLGGTGSVK Y SEGRSNSRGKK+SP SRAKRDFNRAAMRERSKWERETVSNTPDRGFSSSTAPSWGGFSAQKSGTYAVATLIVAWSGLNSTPPRAEPRRGGWFTRDSRDRD+DRGVEFSVVN RQSALTLLEWLGDEAAEGRGENVLDVEVLWTPADP DSLDREDLDTKWPELRAL
Sbjct:    1 MLRLSLPATPGCWYLSPLPMVSVWRTMFFSLFVVEALAFVP----RIAFSAPPAS-RTSGQQPTHERYSSRGIVARSQLPASRSVWGERMSAAGCSKDVPGDATACVVGRDVCTAVDNRNAGTGTAGTTGLTIGDEIGGDGRSGRRLLAIPPLLVAVATGRSLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGRYQRPRAGRDIYGSEGSRFHIRFDGGRGGRRSTRARFNPYDGDAPSTSITPGDVAMIGGVSAAVAAVQRYNRKRFVDEEGSGQRPSAPLPPRSGRGGSSQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWLGGTGSVKMYASEGRSNSRGKKSSPVSRAKRDFNRAAMRERSKWERETVSNTPDRGFSSSTAPSWGGFSAQKSGTYAVATLIVAWSGLNSTPPRAEPRRGGWFTRDSRDRDDDRGVEFSVVN-RQSALTLLEWLGDEAAEGRGENVLDVEVLWTPADPDDSLDREDLDTKWPELRAL 539          
BLAST of mRNA_E_fasciculatus_S2_contig72.15377.1 vs.
Match: Hypothetical (protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QBA5_9EUKA)

HSP 1 Score: 80.1 bits (196), Expect = 2.510e-13
Identity = 74/249 (29.72%), Postives = 107/249 (42.97%), Query Frame = 1
Query:  892 RSSRG---GSSQTAVVTTLQLGLYC-DRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWLGGTGSVKTYTSEGRSNSRGKKTSPTSRAKRDFNRAAMRERSKWERETVSNTPDRGFSSSTAPSWGGFSAQKSGTYAVATLIVAWSGLNSTPPRAEPRRGGWFTRDSRDRDEDRGVEFSVVNSRQSALTLLEWLGDEAAEGRGENVLDVEVLWTPADPADSLDREDLDTKWPELRAL 1626
            RSSRG             LQ+  YC DRQ     +   L  L++TAD +S  GL  L+++ CL  LRS +DWL    + +T            K   ++  +  +NR  ++ERSKWE E  S T                ++    TY VATL+V     +  P                        E + VN  + A++ L    D + E   +N++  EVLWTP DP D +DR+D+   +PEL  L
Sbjct:   44 RSSRGIEQADEAAGAAYCLQVACYCGDRQNS---LYGKLQSLARTADTSSYEGLQQLVSDTCLATLRSSKDWLAARTTSET------------KGLFSNDVESQYNRIVVKERSKWESEQKSLTR---------------TSAGEATYMVATLVVLLRNGSELP------------------------EVTGVNELREAISQL--AADVSIE---DNLIAAEVLWTPEDPNDVMDRDDMFLNFPELVTL 233          
BLAST of mRNA_E_fasciculatus_S2_contig72.15377.1 vs.
Match: DUF1517 (domain-containing protein (Fragment) n=1 Tax=Microcoleus sp. SIO2G3 TaxID=2607795 RepID=A0A6P0QZA2_9CYAN)

HSP 1 Score: 79.0 bits (193), Expect = 4.190e-13
Identity = 75/244 (30.74%), Postives = 109/244 (44.67%), Query Frame = 1
Query:  913 SQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWLGGTGSVKTYTSEGRSNSRGKKTSPTSRAKRDFNRAAMRERSKWERETVSNTPDRGFSSSTA---PSWGGFSAQKS---GTYAVATLIVAWSGLNSTPPRAEPRRGGWFTRDSRDRDEDRGVEFSVVNSRQSALTLLEWLGDEAAEGRGENVLDVEVLWTPADPADSLDREDLDTKWPELRAL 1626
            S T  V  +Q+GL  + +  Q D    LD+L+QTAD ++  GL+ L+ E  L+LLR    W+   G  +    E               A+  FNR A+ ERSK+  ETV+N  ++   +STA   P+ GG  AQ S   G + V TL+VA  G                            ++   +NS   A   L  LG        + ++ VEVLWTP    D+L  +DL T + +LR +
Sbjct:   18 SPTVSVAKVQVGLLSEARSLQAD----LDRLAQTADTSTSAGLTQLLQETTLSLLRHPEYWVYAGGETQQTRLEA--------------AELQFNRLALAERSKFAEETVTNYNNQLRGASTAGTLPAGGGALAQASNEPGEFLVVTLLVAAQGK---------------------------LQLPAINSADDARRALSALGAV----NSDRLMAVEVLWTPQAEGDTLSSDDLLTNYTDLRRI 212          
BLAST of mRNA_E_fasciculatus_S2_contig72.15377.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEJ7_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 5.840e-13
Identity = 76/244 (31.15%), Postives = 111/244 (45.49%), Query Frame = 1
Query:  904 GGSSQTAV-VTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWLGGTGSVKTYTSEGRSNSRGKKTSPTSRAKRDFNRAAMRERSKWERETVSNTPDRGFSSSTAPSWGGFSAQKSG--TYAVATLIVAWSGLNSTPPRAEPRRGGWFTRDSRDRDEDRGVEFSVVNSRQSALTLLEWLGDEAAEGRGENVLDVEVLWTPADPADSLDREDLDTKWPELRAL 1626
            GGS    V V  LQ+ L    +  +G +LA L  +++ A+ +S  GLST ++EVCL L+R   DW+      + +                 RA+  FN  A+ ER+K ERETVS       S S      G   +  G  T AV T+++A  G   +  R +  R                     +NS  +   +L  +  +A    GENVL VE+LWTP +P +SLDR+ +   +PEL  L
Sbjct:  192 GGSLGRGVGVVKLQVALNASDRSSRG-ILAQLKSIAERAETSSRGGLSTAVSEVCLALVRRQPDWIASASQYEYFAPRS-----------AERAEAVFNTYAIAERTKVERETVSRFGGEDLSDSRRSD--GVRPEDLGKPTQAVVTIVLALKG--ESLKRFQLERS--------------------INSASALRNVLTQVAGDATTDDGENVLGVELLWTPEEPWESLDRQAVLEDFPELMDL 399          
BLAST of mRNA_E_fasciculatus_S2_contig72.15377.1 vs.
Match: Membrane (protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K0F2_9EUKA)

HSP 1 Score: 75.1 bits (183), Expect = 1.210e-11
Identity = 77/244 (31.56%), Postives = 107/244 (43.85%), Query Frame = 1
Query:  892 RSSRG--GSSQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWLGGTGSVKTYTSEGRSNSRGKKTSPTSRAKRDFNRAAMRERSKWERETVSNTPDRGFSSSTAPSWGGFSAQKSGTYAVATLIVAWSGLNSTPPRAEPRRGGWFTRDSRDRDEDRGVEFSVVNSRQSALTLLEWLGDEAAEGRGENVLDVEVLWTPADPADSLDREDLDTKWPEL 1617
            RSSRG   S Q      LQ+  YCD +  Q  +   L+K++ +AD +S  GL +L+++ CL +LRS +DWL    + +T      S   G   +    A   +NR  + ERSKWE E  +          TAP           TY VATL+V    L S  P     + G    D RD  ++     SV                       +N+L  EVLWTP D  D +DR++L   +PEL
Sbjct:   41 RSSRGIEASDQPGAALCLQVACYCDDR--QNSLFGKLNKIASSADTDSELGLQSLVSDTCLAILRSSKDWL----AARTE-----SEIAGLLKNDVDAA---YNRLVVTERSKWEVEQKALKR-------TAPG--------QPTYMVATLVVL---LRSAQPLKPISQNG----DLRDALQNLAAAVSV----------------------DDNLLAAEVLWTPEDTNDVMDRDELFLNFPEL 226          
BLAST of mRNA_E_fasciculatus_S2_contig72.15377.1 vs.
Match: Hypothetical (protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A6T9D2F6_9EUKA)

HSP 1 Score: 72.4 bits (176), Expect = 5.360e-11
Identity = 68/245 (27.76%), Postives = 104/245 (42.45%), Query Frame = 1
Query:  892 RSSRGGSSQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWLGGTGSVKTYTSEGRSNSRGKKTSPTSRAKRDFNRAAMRERSKWERETVSNTPDRGFSSSTAPSWGGFSAQKSGTYAVATLIVAWSGLNSTPPRAEPRRGGWFTRDSRDRDEDRGVEFSVVNSRQSALTLLEWLGDEAAEGRGENVLDVEVLWTPADPADSLDREDLDTKWPELRAL 1626
            RSSRG  +     T L L + C  +  Q  +   L  +++TAD  S  GL  L ++ CL +LR+ +DWL    + +T +S          T   +  +  +NR  ++ER+KW+ E  S                  SA    TY VATL+V     +  P                          S V+  + A+  L    D + E   +N+L  EVLWTP D  D +DR+D+   +PEL ++
Sbjct:    7 RSSRGIEAADTAGTALCLQVACYCEDRQTSLAGKLQSIARTADAGSYEGLQALCSDTCLAMLRTSKDWL----AARTVSSTS--------TMFQNDVESTYNRLVVQERAKWDMEAKSLKR---------------SAPGQPTYMVATLVVLLRSGSELPA------------------------ISGVSDLREAIAQL--AADVSVE---DNLLAAEVLWTPEDTNDVMDRDDMFLNFPELVSI 195          
BLAST of mRNA_E_fasciculatus_S2_contig72.15377.1 vs.
Match: DUF1517 (domain-containing protein n=7 Tax=Sphaerospermopsis TaxID=752201 RepID=A0A8G0W731_9CYAN)

HSP 1 Score: 74.3 bits (181), Expect = 7.560e-11
Identity = 70/250 (28.00%), Postives = 108/250 (43.20%), Query Frame = 1
Query:  907 GSSQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWL---GGTGSVKTYTSEGRSNSRGKKTSPTSRAKRDFNRAAMRERSKWERETVSNTPDRGFSSSTAPSWGG-------FSAQKSGTYAVATLIVAWSGLNSTPPRAEPRRGGWFTRDSRDRDEDRGVEFSVVNSRQSALTLLEWLGDEAAEGRGENVLDVEVLWTPADPADSLDREDLDTKWPELRAL 1626
            GS+    +T LQ+GL    +G Q +    L+++++ AD N+P+G + ++ E  L LLR    W+   GGT   K   +E +                 FNR ++ ERSK+  ET+SN  ++   S  A    G       F ++  G Y + TL+ A               G W              +F  +NS       L  +G       GE VL +EVLWTP    D+L  +DL  ++P+LR +
Sbjct:  123 GSNPNVSITRLQVGLLAQARGLQSE----LNQIAEKADTNTPQGRAEILQEASLALLRHPEYWVYAGGGTQQAKLNAAESQ-----------------FNRLSLAERSKFSEETLSNVNNQ-LKSVLAKELPGDIDNPTRFISEGPGEYIIVTLLAA-------------TLGKW--------------DFPQINSTNDLRQALRQVGSLP----GEQVLAIEVLWTPQAEGDTLTSDDLLAEYPDLRLV 319          
BLAST of mRNA_E_fasciculatus_S2_contig72.15377.1 vs.
Match: Uncharacterized (protein n=11 Tax=Cyanobacteria TaxID=1117 RepID=K9QD55_9NOSO)

HSP 1 Score: 74.3 bits (181), Expect = 7.870e-11
Identity = 70/248 (28.23%), Postives = 105/248 (42.34%), Query Frame = 1
Query:  910 SSQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWL---GGTGSVKTYTSEGRSNSRGKKTSPTSRAKRDFNRAAMRERSKWERETVSNTPDR---GFSSSTAPSWGGFS------AQKSGTYAVATLIVAWSGLNSTPPRAEPRRGGWFTRDSRDRDEDRGVEFSVVNSRQSALTLLEWLGDEAAEGRGENVLDVEVLWTPADPADSLDREDLDTKWPEL 1617
            S+    VT LQ+GL    +    D+   L+K+++ AD NSP G + ++ E  L LLR    W+   GGT   K                  S A+  FNR A+ ERSK+  ET+SN  ++     +    P+ G         ++  G Y + TL+ A  G   TP                            +NS +S   +L  +G       GE +L +EVLWTP    D+L  +DL  ++P+L
Sbjct:  125 SNPNVSVTRLQVGLLAQAR----DLQPELNKIAEIADTNSPEGRAAVLQETSLALLRHPEYWVYAGGGTQQAK-----------------LSSAESQFNRLALAERSKFSEETLSNVNNQLKAALAKEALPASGELDNPTKLISEGPGEYIIVTLLAATLGKLETP---------------------------AINSTESLRQVLRQIGSIP----GEQLLAIEVLWTPQAEGDTLSSDDLLAEYPDL 320          
BLAST of mRNA_E_fasciculatus_S2_contig72.15377.1 vs.
Match: DUF1517 (domain-containing protein n=1 Tax=Nodosilinea sp. LEGE 07298 TaxID=2777970 RepID=A0A8J7B5L9_9CYAN)

HSP 1 Score: 72.4 bits (176), Expect = 1.040e-10
Identity = 71/240 (29.58%), Postives = 112/240 (46.67%), Query Frame = 1
Query:  907 GSSQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWLGGTGSVKTYTSEGRSNSRGKKTSPTSRAKRDFNRAAMRERSKWERETVSNTPDRGFSSSTAPSWGGFSAQKSGTYAVATLIVAWSGLNSTPPRAEPRRGGWFTRDSRDRDEDRGVEFSVVNSRQSALTLLEWLGDEAAEGRGENVLDVEVLWTPADPADSLDREDLDTKWPELRAL 1626
            GS+    V  LQ+GL  + +G Q D    L++L+ TAD  + +GL+ L+ E  L LLR    W         Y +     S  K+T   S A+++FNR A+  RS++  ET+SN  ++   +       G + Q  G Y +AT++VA  G    P                         +S  + RQ+    L  +G  +    GEN+L VEVLWTP    ++L  ++L  ++PEL+ +
Sbjct:   41 GSNPPVAVAKLQVGLLAEARGLQDD----LNRLATTADTGTSQGLAKLLQETTLALLRHPDYWA--------YAA-----SEDKQTRLLS-AEQEFNRYALSARSRFSAETLSNVNNQLTQAEIQAKLPGDADQAPGEYILATVVVATQGKLDLPDI-----------------------YSSADLRQA----LSHIGAVS----GENLLAVEVLWTPQQSGETLSGDELIAQYPELKLI 231          
BLAST of mRNA_E_fasciculatus_S2_contig72.15377.1 vs.
Match: DUF1517 (domain-containing protein n=1 Tax=Microcoleus sp. FACHB-1515 TaxID=2692821 RepID=UPI0016839E37)

HSP 1 Score: 73.9 bits (180), Expect = 1.080e-10
Identity = 73/247 (29.55%), Postives = 109/247 (44.13%), Query Frame = 1
Query:  904 GGSSQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTLINEVCLTLLRSGRDWLGGTGSVKTYTSEGRSNSRGKKTSPTSRAKRDFNRAAMRERSKWERETVSNTPD--RGFS-SSTAPSWGGFSAQKS---GTYAVATLIVAWSGLNSTPPRAEPRRGGWFTRDSRDRDEDRGVEFSVVNSRQSALTLLEWLGDEAAEGRGENVLDVEVLWTPADPADSLDREDLDTKWPELRAL 1626
            G  S    V  +Q+GL  + +  Q D    LD+++QTAD ++  GL+ ++ E  L LLR    W+   G  +    E               A+  FNR A+ ERSK+  ETV+N  +  RG S + T P+ GG  AQ S   G + V TL+VA  G                            ++   +N    A   L  LG  +++     ++ VEVLWTP    D+L  +DL T + +LR +
Sbjct:  128 GYDSPAVSVAKVQVGLLSEARSLQTD----LDRIAQTADTSTSAGLTQVLQETTLALLRHPEYWVYAGGETQQARLEA--------------AELQFNRLALAERSKFAEETVTNYNNQLRGTSPAGTLPAAGGALAQTSDSPGEFIVVTLLVAAQGK---------------------------LQLPAINGADDARRALSQLGAVSSD----KLMAVEVLWTPQAQGDTLSSDDLLTNYTDLRRI 325          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig72.15377.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized4.780e-29387.52protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKS6... [more]
Hypothetical2.510e-1329.72protein n=1 Tax=Coccolithus braarudii TaxID=221442... [more]
DUF15174.190e-1330.74domain-containing protein (Fragment) n=1 Tax=Micro... [more]
Uncharacterized5.840e-1331.15protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Membrane1.210e-1131.56protein n=1 Tax=Chrysochromulina tobinii TaxID=146... [more]
Hypothetical5.360e-1127.76protein n=1 Tax=Haptolina ericina TaxID=156174 Rep... [more]
DUF15177.560e-1128.00domain-containing protein n=7 Tax=Sphaerospermopsi... [more]
Uncharacterized7.870e-1128.23protein n=11 Tax=Cyanobacteria TaxID=1117 RepID=K9... [more]
DUF15171.040e-1029.58domain-containing protein n=1 Tax=Nodosilinea sp. ... [more]
DUF15171.080e-1029.55domain-containing protein n=1 Tax=Microcoleus sp. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig72contigE_fasciculatus_S2_contig72:21170..24114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score79.7
Seed ortholog evalue4.6e-12
Seed eggNOG ortholog2880.D8LDM2
Model size1629
Hectar predicted targeting categorychloroplast
Exons4
EggNOG free text desc.Protein of unknown function (DUF1517)
EggNOG OGs2QUI9@2759,COG4371@1
Ec32 ortholog descriptionProtein of unknown function DUF1517
Ec32 orthologEc-21_001970.1
Cds size1629
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842383.0160918-CDS-E_fasciculatus_S2_contig72:21169..222281696842383.0160918-CDS-E_fasciculatus_S2_contig72:21169..22228Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig72 21170..22228 +
1696842383.02805-CDS-E_fasciculatus_S2_contig72:22591..226671696842383.02805-CDS-E_fasciculatus_S2_contig72:22591..22667Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig72 22592..22667 +
1696842383.0385602-CDS-E_fasciculatus_S2_contig72:22953..232811696842383.0385602-CDS-E_fasciculatus_S2_contig72:22953..23281Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig72 22954..23281 +
1696842383.0552423-CDS-E_fasciculatus_S2_contig72:23948..241141696842383.0552423-CDS-E_fasciculatus_S2_contig72:23948..24114Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig72 23949..24114 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig72.15377.1prot_E_fasciculatus_S2_contig72.15377.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig72 21170..24114 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig72.15377.1

>prot_E_fasciculatus_S2_contig72.15377.1 ID=prot_E_fasciculatus_S2_contig72.15377.1|Name=mRNA_E_fasciculatus_S2_contig72.15377.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=543bp
MLRLSLPATPGCRLLAPLPMVSVWRAMFFSLFVVKALAFVPSSTSRIAYS
TPPAAARTSGQPAHEGYSSRGVVAPSRLPASRSMWGACMSAAGRSTDVPG
DGSACVVERDVCTTVDSCNTGTGIAGTTGLASGGETGGDGRNGRRLLSIP
PLLVAVATGRGLAATAAVTGGRIGGGGYSAPAAAERTPSAPPMQQQRQYQ
PPQQQQQYQQPRAGRDIYGSEGSRFHIRFDGGGGGRRSTRARFNPYDGDA
PSTSITPGDVAMVGGVSAAVAAVQRYNRRRFLDEEGYRQRPSAPLPPRSS
RGGSSQTAVVTTLQLGLYCDRQGGQGDVLATLDKLSQTADVNSPRGLSTL
INEVCLTLLRSGRDWLGGTGSVKTYTSEGRSNSRGKKTSPTSRAKRDFNR
AAMRERSKWERETVSNTPDRGFSSSTAPSWGGFSAQKSGTYAVATLIVAW
SGLNSTPPRAEPRRGGWFTRDSRDRDEDRGVEFSVVNSRQSALTLLEWLG
DEAAEGRGENVLDVEVLWTPADPADSLDREDLDTKWPELRAL*
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mRNA from alignment at E_fasciculatus_S2_contig72:21170..24114+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig72.15377.1 ID=mRNA_E_fasciculatus_S2_contig72.15377.1|Name=mRNA_E_fasciculatus_S2_contig72.15377.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2945bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig72:21170..24114+ (Ectocarpus fasciculatus EfasUO2)
ATGCTCAGACTCTCCCTCCCTGCCACACCAGGCTGCCGGCTCCTTGCCCC GCTGCCGATGGTGTCGGTCTGGAGAGCGATGTTTTTTTCTCTCTTCGTTG TCAAGGCGTTAGCATTTGTTCCTAGCAGCACCTCCAGGATAGCATATTCC ACACCACCTGCCGCTGCTAGAACAAGCGGGCAGCCGGCACATGAAGGGTA CAGCTCCCGAGGGGTCGTTGCTCCATCACGGCTGCCGGCAAGCAGAAGCA TGTGGGGCGCATGCATGAGTGCTGCTGGGCGCTCTACAGATGTACCAGGA GATGGGTCAGCCTGCGTTGTGGAACGTGACGTCTGCACCACCGTCGACAG CTGCAACACCGGCACCGGTATAGCCGGAACAACGGGGTTGGCGAGCGGCG GCGAGACGGGCGGAGATGGCCGAAATGGGCGTCGTTTGCTGTCGATTCCC CCTCTACTCGTTGCTGTGGCTACGGGAAGAGGCCTCGCTGCTACAGCTGC TGTGACCGGGGGCAGAATAGGCGGCGGAGGCTACTCCGCCCCGGCCGCCG CGGAGCGCACGCCTAGTGCCCCTCCAATGCAACAGCAACGGCAGTACCAG CCGCCTCAGCAGCAGCAACAGTACCAGCAGCCAAGGGCTGGCCGAGACAT CTACGGCTCCGAGGGAAGCCGGTTTCACATCAGGTTTGATGGTGGAGGAG GAGGGAGGCGATCAACCCGCGCTCGCTTCAACCCGTACGACGGTGATGCG CCTTCCACCTCCATCACTCCCGGCGACGTCGCCATGGTCGGCGGGGTTAG CGCCGCCGTGGCGGCCGTTCAGCGCTACAACAGAAGACGATTTTTAGACG AAGAAGGTTACCGCCAGCGTCCCTCCGCGCCGCTACCGCCACGTTCTAGC CGGGGGGGCAGCTCGCAGACGGCCGTGGTGACGACGCTACAGTTGGGCTT GTATTGCGATCGCCAGGGGGGACAGGGGGACGTGTTGGCTACGCTGGACA AGCTCTCGCAGACGGCCGATGTTAACAGCCCGAGAGGGTTGTCCACCCTT ATCAATGAGGTGAGGCTGACAGAGCAAGCACGTAGTACGCCGTTCCTAAG AATGAAGCTTGGCGAGAGATGTTGATGGGCATATCGAGCCATTGAACTCG TGTGCTCTTTTCCCATCTTGCGCGTTTCTTGCTGAGCAGTCAAAACGGCG GGCAATGTGTCTTTGTTTCCCAGCACGTCCAACCCGGCGACAAACCCGCC CTGTATCTGCATGTGTGCGTTGACGAAGACGTTTGCGTGTCATCGTGGGG TGCTAGTTGTGCTACTATTGCAACTCGTGCTTTGCGGCCCCTATCGCCGG CGGTCTTGTGTCAGTTATAAGCCTTGGGTTTCCGTAACTTGAACGCACAT CGAACCTATCGTATGTGTGCAGGTGTGCCTGACGCTGCTTCGATCGGGCA GAGATTGGCTTGGGGGCACTGGGAGCGTCAAAACGTACACTTCGGAAGGT CAGTCGCACATACAGCATCAGTTTGTCGCACCCCACGTGGATGCCGCGGA ACGATGTAGCTATTTAGTTCGAACAGGTTGCCCTTCAAGTTCGCACTCCT GCAGGACCATGCTACTGTATGCTGCTCGCAAGAAAGGATGCGCTCCGATT TCGCTATTTCAGCTAGTAAAACATGACATAGCGACCATCCTAGGCGTTTA TACTCGTCGAAGGAAGGCCCCACGGAACACAGCACGCGGTGGTATTTCAC CCGCCGTGACACCCACTGCCGCCCCGCCCTCCAGGCCGCTCAAACAGCAG GGGCAAGAAAACCTCCCCCACGTCCAGGGCCAAGCGCGACTTCAACCGAG CCGCCATGCGCGAGCGATCAAAGTGGGAGCGGGAGACTGTGTCGAATACC CCCGACAGAGGGTTCAGCAGCAGCACCGCGCCGTCGTGGGGAGGTTTCAG CGCCCAGAAGAGCGGAACCTACGCGGTAGCGACGCTGATCGTGGCGTGGT CGGGTTTGAACAGCACCCCTCCCCGAGCTGAGCCGCGAAGAGGCGGCTGG TTCACGCGGGATAGCCGCGATCGCGACGAAGACCGAGGCGTGGAGTTCTC CGTGGTGAACAGGTGCGAAGGAAAAGATGTAATGTCTGTTGTTGGTATCT TTTCCGGAGTATGCATGTAGTTGGAGAATGTCCCAGTTCGTTTTTGGAAC ATATCAGAAGATATCACACATCAGAAGATATACGTCACAGAACGGCTACC CGTTCCTGAGCACTTCCCAACTTATTCCACACAGCTGGTTGCCGTATGCG TACATACTGTAGGATGGGGCTGTGGTTTTTTGTGGTTTTCTGGGACCCGA TGAACGCGGCAACTGTACGATTTCATCACGGCGCTAGGTCAACTCTTTGC TGCATCGCGTTGGTGGTGTTCGCGCGCATGGGTTGTGTTTGTTTGGGCCA ACACATTAGGAATATCTCATTCCCCGCTCGGAGGCTGGAGGCGTTCGCCG AAATAGTTAGCGAACGGGGGAAAGGAGGACCTTGTTGGGTCCGAGGTGCT ATCCGTCGGAGTAGACTTGCACGAGAACGCCGACTCTTGCGGCTGGCCTT GCCGGCACGCGCCTGTGCAGTTTTGTAGCGCAGTTGGAGGCTCGTGCCAT CTCGCTTGGTGGGATTCATGCTTGAACTGCCGGGCGTGTGCTTGGCGCGT TGCATCGCCGTCCCCCAGTGACCACCAACCAACCCATGCACCGTCTGCCT TGTTCGCGGTGCACAACCGACCAACGAAGCAGGCAGTCAGCGCTGACGCT CCTGGAATGGCTAGGAGACGAGGCCGCTGAAGGGCGGGGAGAGAACGTGT TGGATGTAGAGGTGCTGTGGACTCCCGCGGACCCCGCTGATTCGTTGGAC CGGGAAGATTTGGACACCAAATGGCCGGAGCTAAGAGCGCTCTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig72:21170..24114+

>mRNA_E_fasciculatus_S2_contig72.15377.1 ID=mRNA_E_fasciculatus_S2_contig72.15377.1|Name=mRNA_E_fasciculatus_S2_contig72.15377.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1629bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig72:21170..24114+ (Ectocarpus fasciculatus EfasUO2)
ATGCTCAGACTCTCCCTCCCTGCCACACCAGGCTGCCGGCTCCTTGCCCC
GCTGCCGATGGTGTCGGTCTGGAGAGCGATGTTTTTTTCTCTCTTCGTTG
TCAAGGCGTTAGCATTTGTTCCTAGCAGCACCTCCAGGATAGCATATTCC
ACACCACCTGCCGCTGCTAGAACAAGCGGGCAGCCGGCACATGAAGGGTA
CAGCTCCCGAGGGGTCGTTGCTCCATCACGGCTGCCGGCAAGCAGAAGCA
TGTGGGGCGCATGCATGAGTGCTGCTGGGCGCTCTACAGATGTACCAGGA
GATGGGTCAGCCTGCGTTGTGGAACGTGACGTCTGCACCACCGTCGACAG
CTGCAACACCGGCACCGGTATAGCCGGAACAACGGGGTTGGCGAGCGGCG
GCGAGACGGGCGGAGATGGCCGAAATGGGCGTCGTTTGCTGTCGATTCCC
CCTCTACTCGTTGCTGTGGCTACGGGAAGAGGCCTCGCTGCTACAGCTGC
TGTGACCGGGGGCAGAATAGGCGGCGGAGGCTACTCCGCCCCGGCCGCCG
CGGAGCGCACGCCTAGTGCCCCTCCAATGCAACAGCAACGGCAGTACCAG
CCGCCTCAGCAGCAGCAACAGTACCAGCAGCCAAGGGCTGGCCGAGACAT
CTACGGCTCCGAGGGAAGCCGGTTTCACATCAGGTTTGATGGTGGAGGAG
GAGGGAGGCGATCAACCCGCGCTCGCTTCAACCCGTACGACGGTGATGCG
CCTTCCACCTCCATCACTCCCGGCGACGTCGCCATGGTCGGCGGGGTTAG
CGCCGCCGTGGCGGCCGTTCAGCGCTACAACAGAAGACGATTTTTAGACG
AAGAAGGTTACCGCCAGCGTCCCTCCGCGCCGCTACCGCCACGTTCTAGC
CGGGGGGGCAGCTCGCAGACGGCCGTGGTGACGACGCTACAGTTGGGCTT
GTATTGCGATCGCCAGGGGGGACAGGGGGACGTGTTGGCTACGCTGGACA
AGCTCTCGCAGACGGCCGATGTTAACAGCCCGAGAGGGTTGTCCACCCTT
ATCAATGAGGTGTGCCTGACGCTGCTTCGATCGGGCAGAGATTGGCTTGG
GGGCACTGGGAGCGTCAAAACGTACACTTCGGAAGGCCGCTCAAACAGCA
GGGGCAAGAAAACCTCCCCCACGTCCAGGGCCAAGCGCGACTTCAACCGA
GCCGCCATGCGCGAGCGATCAAAGTGGGAGCGGGAGACTGTGTCGAATAC
CCCCGACAGAGGGTTCAGCAGCAGCACCGCGCCGTCGTGGGGAGGTTTCA
GCGCCCAGAAGAGCGGAACCTACGCGGTAGCGACGCTGATCGTGGCGTGG
TCGGGTTTGAACAGCACCCCTCCCCGAGCTGAGCCGCGAAGAGGCGGCTG
GTTCACGCGGGATAGCCGCGATCGCGACGAAGACCGAGGCGTGGAGTTCT
CCGTGGTGAACAGCAGGCAGTCAGCGCTGACGCTCCTGGAATGGCTAGGA
GACGAGGCCGCTGAAGGGCGGGGAGAGAACGTGTTGGATGTAGAGGTGCT
GTGGACTCCCGCGGACCCCGCTGATTCGTTGGACCGGGAAGATTTGGACA
CCAAATGGCCGGAGCTAAGAGCGCTCTGA
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