mRNA_E_fasciculatus_S2_contig718.15355.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig718.15355.1
Unique NamemRNA_E_fasciculatus_S2_contig718.15355.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig718.15355.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5B3_9PHAE)

HSP 1 Score: 341 bits (875), Expect = 2.590e-103
Identity = 221/276 (80.07%), Postives = 234/276 (84.78%), Query Frame = 1 
Query:  376 MPQHETPGPDQSLVRE-DEGADGACGTVAGRDDSRPGDNMTSSHQPSGVVEAGGGGNTHVKFSIGPTVSLDEGPSLGPSSTSLCETSGSFAVASSFRIPPVRSAPVPWRPRAANITKSSSGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRWVSPSDAVENGDLCTAGSEGNVHRPPSVQSSAVYPRIADAHGGVSLRLNPAERSLEPWGTALAPMRAMCDIDPSLSRSGIVYRDVIPAVEGAQKMKTCHKAKI 1200
            MP+ +TP  D+SLVR+ D GADGA GTV  R+D RPGDN+TSSH PSGV+E GGG NT VKFSIGPTVSLD+G SLGPSSTSLCETSGSFAVASS RIPPVRSAPVPWRPRAA   KSSS  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX              GRW+SP DA ENGDLCTAGS GN H+PPSVQSS VYPRI DAHG VSLRLNPAERSLEPWGTALAPMRAMCDIDPSLSR+GIVYR+VI AVEGAQKMKTCHKAK+
Sbjct:    1 MPRDKTPCSDRSLVRDRDRGADGASGTVTDRNDPRPGDNLTSSHLPSGVIEGGGGSNTRVKFSIGPTVSLDDGSSLGPSSTSLCETSGSFAVASSLRIPPVRSAPVPWRPRAAINAKSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAAEGDALA----GRWISPRDAGENGDLCTAGSAGNAHKPPSVQSSVVYPRIPDAHGWVSLRLNPAERSLEPWGTALAPMRAMCDIDPSLSRAGIVYRNVIHAVEGAQKMKTCHKAKV 272
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BLAST of mRNA_E_fasciculatus_S2_contig718.15355.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE39_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 2.500e-11
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 1 
Query: 1138 RDVIPAVEGAQKMKTCHKAKIKKERSAKSLLGQGVRPRTSEPRS 1269
            RDVI AVEGAQKMKTCHKAKI+KER A+SLLGQ VRPRTSEPRS
Sbjct:    8 RDVIHAVEGAQKMKTCHKAKIRKERDARSLLGQDVRPRTSEPRS 51
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig718.15355.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.590e-10380.07protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.500e-1188.64protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig718contigE_fasciculatus_S2_contig718:12329..14689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size1272
Hectar predicted targeting categoryother localisation
Exons3
Cds size1272
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842380.4337034-CDS-E_fasciculatus_S2_contig718:12328..124031696842380.4337034-CDS-E_fasciculatus_S2_contig718:12328..12403Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig718 12329..12403 -
1696842380.450224-CDS-E_fasciculatus_S2_contig718:12827..139741696842380.450224-CDS-E_fasciculatus_S2_contig718:12827..13974Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig718 12828..13974 -
1696842380.4615815-CDS-E_fasciculatus_S2_contig718:14639..146891696842380.4615815-CDS-E_fasciculatus_S2_contig718:14639..14689Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig718 14640..14689 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig718.15355.1prot_E_fasciculatus_S2_contig718.15355.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig718 12329..14689 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig718.15355.1

>prot_E_fasciculatus_S2_contig718.15355.1 ID=prot_E_fasciculatus_S2_contig718.15355.1|Name=mRNA_E_fasciculatus_S2_contig718.15355.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=424bp
MFKFRRSTVACDGASDRFGPGRLSRRLHQTERLRELRARRAAGFVHDAPS
GTPLSRKSASGGKPFVKERTVDTPAAGSRESKRHRTSAAVSPKVAEQVPP
QKSSPVDVVLSIFQPGEALPRCGHPMPQHETPGPDQSLVREDEGADGACG
TVAGRDDSRPGDNMTSSHQPSGVVEAGGGGNTHVKFSIGPTVSLDEGPSL
GPSSTSLCETSGSFAVASSFRIPPVRSAPVPWRPRAANITKSSSGRSGSK
RSGGKRAHQKQHAGRTGALNSDEREIDETALAEAAATAAAGGAGAGRWVS
PSDAVENGDLCTAGSEGNVHRPPSVQSSAVYPRIADAHGGVSLRLNPAER
SLEPWGTALAPMRAMCDIDPSLSRSGIVYRDVIPAVEGAQKMKTCHKAKI
KKERSAKSLLGQGVRPRTSEPRSR
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mRNA from alignment at E_fasciculatus_S2_contig718:12329..14689-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig718.15355.1 ID=mRNA_E_fasciculatus_S2_contig718.15355.1|Name=mRNA_E_fasciculatus_S2_contig718.15355.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2361bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig718:12329..14689- (Ectocarpus fasciculatus EfasUO2)
ATGTTCAAGTTTCGACGATCCACTGTCGCCTGTGACGGGGCAAGCGATAG
GTACGAGTATACGGCAGACTTGCAGCAGCACATTGAGGGTTCTGGATGAT
GCCCATAGCACGCAAGCTGAGAAAGTTCCATGTCCCACGCACATACAATT
CATACAAAACCGGCTTTAGTTTGTGGTCTTTGCAACAGATAATCTGCAGG
AAGACCTTCGTAGGTCCATACATAAAAAGCTTTTTACAATATGTGTGTGC
TGTTATTTTACTTGTAGCATATCTTGTTGACTACATGTAGCCTGGGGGAA
TTGGTGTCTTGGCGAACCATTCAGCGGCGAGACTTTGTCTGGATTTCTCC
GCTCTTTGATGCACGTAATTCGAAGTAACTCGCTGGATCAGCCGGTGATA
CAATTGCATCAAGAATATTTTTTCTTTGTCTTGGAAGAGAAGGAAATATG
AGGTACTGCTGTAGGATTGGATGGTTTCCGATTTCAGACAACGACACCAG
CAAGATGTGGATGATATATATTTTTTTTCACATCCATCCAAGCACATACG
GTACAAAGCACGCGACGGCGGCATAGACAGACATGCGCGTACAAGGTATC
CAGCTCGGAACCCAGATTGGCATAGAAGAACCGTTCGACGTACATAACTC
TAGTACATGGATGGATTGGTGACGAAAGTTGACCGGCTGCTGCTGTGTGC
TGGACTCGTTCACAGGTTCGGACCCGGAAGGCTATCGCGACGACTCCACC
AAACCGAACGTTTGCGAGAGCTGCGAGCCCGTCGTGCTGCCGGTTTCGTA
CACGATGCACCAAGTGGTACCCCGCTGTCAAGAAAATCGGCAAGCGGCGG
AAAACCATTCGTCAAAGAACGCACAGTTGACACGCCGGCGGCGGGTAGCC
GTGAGAGCAAGCGTCACCGGACATCTGCAGCCGTATCCCCCAAGGTCGCA
GAGCAAGTACCACCGCAGAAGAGTTCTCCGGTTGATGTGGTACTTTCCAT
TTTTCAGCCGGGGGAGGCTCTGCCCCGTTGTGGGCACCCAATGCCACAAC
ACGAGACTCCCGGCCCTGACCAGTCTCTTGTTCGAGAAGACGAGGGTGCA
GACGGCGCATGTGGCACTGTTGCGGGCCGGGACGATTCAAGGCCAGGTGA
CAACATGACATCAAGCCATCAACCCAGCGGGGTGGTCGAGGCTGGTGGTG
GCGGTAATACCCACGTCAAATTTTCCATAGGTCCCACGGTTTCCCTAGAC
GAAGGCCCAAGCCTCGGCCCAAGCTCCACGAGTCTGTGCGAGACTAGCGG
TTCGTTCGCGGTGGCTAGTTCGTTTAGAATCCCTCCCGTTAGGTCCGCGC
CGGTACCGTGGAGGCCTCGGGCGGCGAACATCACCAAGAGCTCGTCCGGT
CGCAGCGGCAGCAAGCGATCGGGCGGAAAGCGGGCACACCAGAAGCAGCA
CGCCGGCAGAACAGGAGCCCTAAACAGTGACGAGAGAGAAATCGACGAGA
CGGCACTGGCGGAAGCCGCAGCGACAGCGGCTGCAGGAGGCGCAGGTGCT
GGAAGATGGGTGTCTCCTAGCGACGCAGTTGAAAACGGCGACCTCTGCAC
TGCTGGTAGTGAGGGCAACGTACACAGACCACCCTCCGTGCAATCGAGTG
CGGTCTACCCACGAATTGCTGACGCACACGGCGGGGTCTCCCTGAGGCTG
AACCCGGCGGAACGGTCGTTGGAACCGTGGGGCACCGCCCTCGCGCCTAT
GCGGGCCATGTGCGACATCGACCCGTCGCTGTCCCGCTCCGGGATCGTGT
ACAGGGACGTCATCCCTGCCGTGGAAGGGGCACAGAAGATGAAAACGTGC
CACAAAGCCAAGGTGGGGAGGAAAGGTTGGTTGGTCCCTCACGCCAAGTT
ACGAAAGATCCTCACAAGCAAGCCCTCCCGCCATTCGTTCGACCATCTTG
TTCGCGCTTGTACTCTCGCGAAGCAGACGCCAGGGAGCCAGTGCGCTCAC
GGCGTATTCCATGAGGCAGGAAAAAATAAAGATGCTTGTATTTGCTTTGA
AAATAAATGGTGAATCACGTTGCCTCGGACACGTGGTGGTGGGGTATATG
CTGCACCTTGGCCTATTGTAGGGATGTGGTGGAAGTGGGAGGGCCAGATG
ATGGGCTTGACGTCATATACCCATTCTTGTGACCCGGGTGTCGATATTCT
ACGGCCATCAACAGTGTAGACGCCTCTGTTAAAACCTGCGTCCCTTCTAC
CTGTGTCATGCCACACCTTTCTCCACTACAACACAGATAAAAAAGGAACG
GAGTGCAAAATCGCTTCTGGGGCAAGGCGTCCGGCCACGCACGAGTGAAC
CTCGATCGCGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig718:12329..14689-

>mRNA_E_fasciculatus_S2_contig718.15355.1 ID=mRNA_E_fasciculatus_S2_contig718.15355.1|Name=mRNA_E_fasciculatus_S2_contig718.15355.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1272bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig718:12329..14689- (Ectocarpus fasciculatus EfasUO2)
ATGTTCAAGTTTCGACGATCCACTGTCGCCTGTGACGGGGCAAGCGATAG
GTTCGGACCCGGAAGGCTATCGCGACGACTCCACCAAACCGAACGTTTGC
GAGAGCTGCGAGCCCGTCGTGCTGCCGGTTTCGTACACGATGCACCAAGT
GGTACCCCGCTGTCAAGAAAATCGGCAAGCGGCGGAAAACCATTCGTCAA
AGAACGCACAGTTGACACGCCGGCGGCGGGTAGCCGTGAGAGCAAGCGTC
ACCGGACATCTGCAGCCGTATCCCCCAAGGTCGCAGAGCAAGTACCACCG
CAGAAGAGTTCTCCGGTTGATGTGGTACTTTCCATTTTTCAGCCGGGGGA
GGCTCTGCCCCGTTGTGGGCACCCAATGCCACAACACGAGACTCCCGGCC
CTGACCAGTCTCTTGTTCGAGAAGACGAGGGTGCAGACGGCGCATGTGGC
ACTGTTGCGGGCCGGGACGATTCAAGGCCAGGTGACAACATGACATCAAG
CCATCAACCCAGCGGGGTGGTCGAGGCTGGTGGTGGCGGTAATACCCACG
TCAAATTTTCCATAGGTCCCACGGTTTCCCTAGACGAAGGCCCAAGCCTC
GGCCCAAGCTCCACGAGTCTGTGCGAGACTAGCGGTTCGTTCGCGGTGGC
TAGTTCGTTTAGAATCCCTCCCGTTAGGTCCGCGCCGGTACCGTGGAGGC
CTCGGGCGGCGAACATCACCAAGAGCTCGTCCGGTCGCAGCGGCAGCAAG
CGATCGGGCGGAAAGCGGGCACACCAGAAGCAGCACGCCGGCAGAACAGG
AGCCCTAAACAGTGACGAGAGAGAAATCGACGAGACGGCACTGGCGGAAG
CCGCAGCGACAGCGGCTGCAGGAGGCGCAGGTGCTGGAAGATGGGTGTCT
CCTAGCGACGCAGTTGAAAACGGCGACCTCTGCACTGCTGGTAGTGAGGG
CAACGTACACAGACCACCCTCCGTGCAATCGAGTGCGGTCTACCCACGAA
TTGCTGACGCACACGGCGGGGTCTCCCTGAGGCTGAACCCGGCGGAACGG
TCGTTGGAACCGTGGGGCACCGCCCTCGCGCCTATGCGGGCCATGTGCGA
CATCGACCCGTCGCTGTCCCGCTCCGGGATCGTGTACAGGGACGTCATCC
CTGCCGTGGAAGGGGCACAGAAGATGAAAACGTGCCACAAAGCCAAGATA
AAAAAGGAACGGAGTGCAAAATCGCTTCTGGGGCAAGGCGTCCGGCCACG
CACGAGTGAACCTCGATCGCGA
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