mRNA_E_fasciculatus_S2_contig7175.15352.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig7175.15352.1
Unique Name	mRNA_E_fasciculatus_S2_contig7175.15352.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig7175.15352.1 vs.
Match: Putative (far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 8.830e-30
Identity = 60/97 (61.86%), Postives = 74/97 (76.29%), Query Frame = 1

Query:    1 FGHVVIQDNTCLTNRYDMKLMLFIGVDSENKTIVFAQGFFSDEQTASFLWALEHYVEICGGRHPEVIITDADCAMTSAVASYLP--RTKHLHCLWHI 285
            +G VVIQDNTCLTNRY+ KL LF+GVDSENKT VFAQGFFS+E T +F +A + +++ICGG HP+VIITD+D AM  ++    P   T HL C WHI
Sbjct:   81 YGGVVIQDNTCLTNRYNNKLCLFVGVDSENKTQVFAQGFFSNESTEAFDFANKFFLDICGG-HPKVIITDSDAAMKESIRGVFPPPHTTHLLCSWHI 176

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BLAST of mRNA_E_fasciculatus_S2_contig7175.15352.1 vs.
Match: SWIM-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 1.870e-28
Identity = 61/108 (56.48%), Postives = 73/108 (67.59%), Query Frame = 1

Query:    1 FGHVVIQDNTCLTNRYDMKLMLFIGVDSENKTIVFAQGFFSDEQTASFLWALEHYVEICGGRH-------------PEVIITDADCAMTSAVASYLPRTKHLHCLWHI 285
            +G +VIQDNTCL NRYD KL LF+GVDSENKT +FAQG  S+EQ +SF +A    +EI GG               P+VIITDAD AMTS+VA  +P TKHL+  WHI
Sbjct:  854 YGGIVIQDNTCLINRYDFKLCLFVGVDSENKTGIFAQGLLSNEQISSFDFANRFLLEIRGGTQSHHLLPTPPTPHPPQVIITDADAAMTSSVAELMPHTKHLYSSWHI 961

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BLAST of mRNA_E_fasciculatus_S2_contig7175.15352.1 vs.
Match: SWIM-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 6.140e-28
Identity = 55/82 (67.07%), Postives = 66/82 (80.49%), Query Frame = 1

Query:   43 RYDMKLMLFIGVDSENKTIVFAQGFFSDEQTASFLWALEHYVEICGGRHPEVIITDADCAMTSAVASYLPRTK-HLHCLWHI 285
            RY M  MLFIGVDSENKT+VFAQGFFSD+ + ++ WAL+HY  ICGG+ PEVIITDAD  MT AV ++LP T  HL+CLWH+
Sbjct:  152 RYGMHFMLFIGVDSENKTVVFAQGFFSDQSSDTYQWALKHYCTICGGQ-PEVIITDADAGMTHAVETFLPSTTVHLYCLWHV 232

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BLAST of mRNA_E_fasciculatus_S2_contig7175.15352.1 vs.
Match: Protein (FAR1-related sequence 5-like n=2 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3KNZ1_9GLOM)

HSP 1 Score: 97.1 bits (240), Expect = 6.710e-22
Identity = 41/92 (44.57%), Postives = 63/92 (68.48%), Query Frame = 1

Query:   10 VVIQDNTCLTNRYDMKLMLFIGVDSENKTIVFAQGFFSDEQTASFLWALEHYVEICGGRHPEVIITDADCAMTSAVASYLPRTKHLHCLWHI 285
            V++ DNT  TNRY M L  F+GVD+ N T +FAQ   SDE ++S++W LE  ++   G  P V+++DAD  + +A+ ++LP  KH+HC++HI
Sbjct:  217 VIVTDNTSRTNRYQMALCFFVGVDNRNYTRIFAQALLSDETSSSYVWVLEQLLKANNGILPAVLLSDADTGLDAAIKNFLPNVKHVHCIFHI 308

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BLAST of mRNA_E_fasciculatus_S2_contig7175.15352.1 vs.
Match: Protein (FAR1-related sequence 5-like n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3M1Z1_9GLOM)

HSP 1 Score: 97.4 bits (241), Expect = 1.420e-21
Identity = 41/92 (44.57%), Postives = 63/92 (68.48%), Query Frame = 1

Query:   10 VVIQDNTCLTNRYDMKLMLFIGVDSENKTIVFAQGFFSDEQTASFLWALEHYVEICGGRHPEVIITDADCAMTSAVASYLPRTKHLHCLWHI 285
            V++ DNT  TNRY M L  F+GVD+ N T +FAQ   SDE ++S++W LE  ++   G  P V+++DAD  + +A+ ++LP  KH+HC++HI
Sbjct:  264 VIVTDNTSRTNRYQMALCFFVGVDNRNHTRIFAQALLSDETSSSYVWVLEQLLKANNGILPTVLLSDADTGLDAAIKNFLPNVKHVHCIFHI 355

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BLAST of mRNA_E_fasciculatus_S2_contig7175.15352.1 vs.
Match: Uncharacterized (protein n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001BF23DE4)

HSP 1 Score: 96.3 bits (238), Expect = 3.380e-21
Identity = 45/95 (47.37%), Postives = 59/95 (62.11%), Query Frame = 1

Query:    1 FGHVVIQDNTCLTNRYDMKLMLFIGVDSENKTIVFAQGFFSDEQTASFLWALEHYVEICGGRHPEVIITDADCAMTSAVASYLPRTKHLHCLWHI 285
            FG V+  D T LTNRY M    F+GV+   ++I+   G  S E T++F+W  E ++E   GR P+ IITD D AM SAVA   P T+H +CLWHI
Sbjct:  255 FGDVITFDTTYLTNRYGMPFAPFVGVNHHGQSILLGAGLLSSEDTSTFVWLFEAWLECMNGRAPKAIITDQDRAMKSAVAMVFPNTRHRYCLWHI 349

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BLAST of mRNA_E_fasciculatus_S2_contig7175.15352.1 vs.
Match: Uncharacterized (protein n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001BF5887B)

HSP 1 Score: 94.7 bits (234), Expect = 1.200e-20
Identity = 44/95 (46.32%), Postives = 60/95 (63.16%), Query Frame = 1

Query:    1 FGHVVIQDNTCLTNRYDMKLMLFIGVDSENKTIVFAQGFFSDEQTASFLWALEHYVEICGGRHPEVIITDADCAMTSAVASYLPRTKHLHCLWHI 285
            FG VV  D T LTNRY M    F+GV+   ++I+F  G  S E T SF+W  + +++   GR P+ IITD D AM +A+A+  P T+H +CLWHI
Sbjct:  192 FGDVVSFDTTYLTNRYGMPFAPFVGVNHHGQSILFGAGLLSSEDTHSFVWLFQMWLDCMKGRAPKAIITDQDRAMKNAIATVFPETRHRYCLWHI 286

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BLAST of mRNA_E_fasciculatus_S2_contig7175.15352.1 vs.
Match: protein (FAR1-RELATED SEQUENCE 5-like n=2 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C7282C0)

HSP 1 Score: 93.6 bits (231), Expect = 1.860e-20
Identity = 44/95 (46.32%), Postives = 59/95 (62.11%), Query Frame = 1

Query:    1 FGHVVIQDNTCLTNRYDMKLMLFIGVDSENKTIVFAQGFFSDEQTASFLWALEHYVEICGGRHPEVIITDADCAMTSAVASYLPRTKHLHCLWHI 285
            FG VV  D T LTNRY M    F+GV+   ++I+F  G  S E T SF+W  + +++   GR P+ IITD D AM +A+A+  P T H +CLWHI
Sbjct:  216 FGDVVSFDTTYLTNRYGMPFAPFVGVNHHGQSILFGAGLLSSEDTHSFVWLFQMWLDCMKGRAPKAIITDQDRAMKNAIATVFPETHHRYCLWHI 310

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BLAST of mRNA_E_fasciculatus_S2_contig7175.15352.1 vs.
Match: Protein (FAR1-RELATED SEQUENCE n=1 Tax=Juglans regia TaxID=51240 RepID=A0A833XRJ2_JUGRE)

HSP 1 Score: 92.0 bits (227), Expect = 1.890e-20
Identity = 42/95 (44.21%), Postives = 59/95 (62.11%), Query Frame = 1

Query:    1 FGHVVIQDNTCLTNRYDMKLMLFIGVDSENKTIVFAQGFFSDEQTASFLWALEHYVEICGGRHPEVIITDADCAMTSAVASYLPRTKHLHCLWHI 285
            FG V+  D T LTNRY M    F+GV+   ++I+   G  S E T++F+W  + ++E   GR P+ IITD D AM +A+A   P T+H +CLWHI
Sbjct:   35 FGDVITFDTTYLTNRYGMPFAPFVGVNHHGQSILLGAGLISSEDTSTFVWLFQAWLECMDGRAPKAIITDQDRAMKAAIALVFPGTRHRYCLWHI 129

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig7175.15352.1 vs.
Match: SWIM-type (domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAB1_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 3.140e-20
Identity = 46/97 (47.42%), Postives = 57/97 (58.76%), Query Frame = 1

Query:    1 FGHVVIQDNTCLTNRYDMKLMLFIGVDSENKTIVFAQGFFSDEQTASFLWALEHYVEICGG--RHPEVIITDADCAMTSAVASYLPRTKHLHCLWHI 285
            FG  +  D T   NRY   + LF+GVD EN++ +  QG    E   +F W L  Y    GG  R P+VI+TDAD AMTSAVAS    T+HL CLWH+
Sbjct:   57 FGGCIQMDTTVFANRYGCPVFLFVGVDDENRSCILGQGLLRSECAETFEWFLTQYESAAGGWERRPKVILTDADVAMTSAVASVWKGTQHLFCLWHV 153

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig7175.15352.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig7175.15352.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Putative	8.830e-30	61.86	far-red impaired response protein n=1 Tax=Ectocarp...	[more]
SWIM-type	1.870e-28	56.48	domain-containing protein n=1 Tax=Ectocarpus sp. C...	[more]
SWIM-type	6.140e-28	67.07	domain-containing protein n=1 Tax=Ectocarpus sp. C...	[more]
Protein	6.710e-22	44.57	FAR1-related sequence 5-like n=2 Tax=Rhizophagus c...	[more]
Protein	1.420e-21	44.57	FAR1-related sequence 5-like n=1 Tax=Rhizophagus c...	[more]
Uncharacterized	3.380e-21	47.37	protein n=1 Tax=Carya illinoinensis TaxID=32201 Re...	[more]
Uncharacterized	1.200e-20	46.32	protein n=1 Tax=Carya illinoinensis TaxID=32201 Re...	[more]
protein	1.860e-20	46.32	FAR1-RELATED SEQUENCE 5-like n=2 Tax=Carya illinoi...	[more]
Protein	1.890e-20	44.21	FAR1-RELATED SEQUENCE n=1 Tax=Juglans regia TaxID=...	[more]
SWIM-type	3.140e-20	47.42	domain-containing protein (Fragment) n=1 Tax=Ectoc...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig7175	contig	E_fasciculatus_S2_contig7175:3620..4309 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	122.5
Seed ortholog evalue	1.1e-25
Seed eggNOG ortholog	2880.D7FLF6
Model size	285
Hectar predicted targeting category	other localisation
Exons	3
EggNOG OGs	2CMGX@1,2QQB8@2759
Cds size	285
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842380.1791596-CDS-E_fasciculatus_S2_contig7175:3619..3709	1696842380.1791596-CDS-E_fasciculatus_S2_contig7175:3619..3709	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig7175 3620..3709 -
1696842380.191875-CDS-E_fasciculatus_S2_contig7175:3947..4098	1696842380.191875-CDS-E_fasciculatus_S2_contig7175:3947..4098	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig7175 3948..4098 -
1696842380.201443-CDS-E_fasciculatus_S2_contig7175:4265..4309	1696842380.201443-CDS-E_fasciculatus_S2_contig7175:4265..4309	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig7175 4266..4309 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig7175.15352.1	prot_E_fasciculatus_S2_contig7175.15352.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig7175 3620..4309 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig7175:3620..4309-
coding sequence from alignment at E_fasciculatus_S2_contig7175:3620..4309-

protein sequence of mRNA_E_fasciculatus_S2_contig7175.15352.1

>prot_E_fasciculatus_S2_contig7175.15352.1 ID=prot_E_fasciculatus_S2_contig7175.15352.1|Name=mRNA_E_fasciculatus_S2_contig7175.15352.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=95bp
FGHVVIQDNTCLTNRYDMKLMLFIGVDSENKTIVFAQGFFSDEQTASFLW
ALEHYVEICGGRHPEVIITDADCAMTSAVASYLPRTKHLHCLWHI

mRNA from alignment at E_fasciculatus_S2_contig7175:3620..4309-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig7175.15352.1 ID=mRNA_E_fasciculatus_S2_contig7175.15352.1|Name=mRNA_E_fasciculatus_S2_contig7175.15352.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=690bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7175:3620..4309- (Ectocarpus fasciculatus EfasUO2)
TTTGGACACGTCGTCATTCAAGACAACACCTGCCTCACAAACAGGTGTGT
ACGCGCACCCATTGGTTACGTTCACGCACGACTCCCCCGCCCTCGACGAA
AACGGGAAAACAATTGAAGCGACCTCGGAGGCATTTTCCCGCTTACATAT
TTCGTGTCTAGTCAATCGTGTTTTCTCCGTCGTACATGTTGTGTTGTGTA
TTTTGTTGCAGGTACGACATGAAGCTGATGCTGTTCATAGGAGTGGACTC
GGAAAACAAGACCATCGTCTTCGCGCAGGGATTCTTTTCCGATGAGCAGA
CTGCCTCATTCTTGTGGGCATTGGAGCACTACGTCGAAATATGTGGGGGG
AGACACCCGGAGGTGAGGTGTCAACGTTCCACAACTCGTCGCGAACGTAT
CCCCATTCATTCGCCCTCCCCAACAACCGCCCGGGCCGACAACTCCATAT
CAGTATGAAGTTGTTGTTGGTGTAGTGTCCGGGTATCCAAACGTACAAAG
AATTTTGAGAGTGGCGTTTACCGGCTCCCGTCGTGCACCTCACACTCTCC
CATTGGCATGCCGCCTGTTCGGCCTACCATTTCTCTCTATTACTGCCTAG
GTTATCATCACGGACGCGGATTGTGCCATGACGAGCGCTGTGGCATCCTA
TTTACCCCGGACCAAGCACTTGCACTGTCTATGGCATATT

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7175:3620..4309-

>mRNA_E_fasciculatus_S2_contig7175.15352.1 ID=mRNA_E_fasciculatus_S2_contig7175.15352.1|Name=mRNA_E_fasciculatus_S2_contig7175.15352.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=285bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7175:3620..4309- (Ectocarpus fasciculatus EfasUO2)
TTTGGACACGTCGTCATTCAAGACAACACCTGCCTCACAAACAGGTACGA
CATGAAGCTGATGCTGTTCATAGGAGTGGACTCGGAAAACAAGACCATCG
TCTTCGCGCAGGGATTCTTTTCCGATGAGCAGACTGCCTCATTCTTGTGG
GCATTGGAGCACTACGTCGAAATATGTGGGGGGAGACACCCGGAGGTTAT
CATCACGGACGCGGATTGTGCCATGACGAGCGCTGTGGCATCCTATTTAC
CCCGGACCAAGCACTTGCACTGTCTATGGCATATT