mRNA_E_fasciculatus_S2_contig7168.15344.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7168.15344.1
Unique NamemRNA_E_fasciculatus_S2_contig7168.15344.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7168.15344.1 vs.
Match: 5-oxoprolinase ((ATP-hydrolysing) 5-oxoprolinase (ATP-hydrolysing) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNG4_ECTSI)

HSP 1 Score: 206 bits (524), Expect = 1.540e-59
Identity = 105/106 (99.06%), Postives = 105/106 (99.06%), Query Frame = 2
Query:    2 LEAVRGSLQAVLDQGITSLAVVFLHSYTFADHERRVGKLAGEMGFTHVSLSSEVMPMVKAVPRGFTTAADAYLTPVIARYVASFRSGFDRGFDDVKTLFMQSDGGL 319
            L AVRGSLQAVLDQGITSLAVVFLHSYTFADHERRVGKLAGEMGFTHVSLSSEVMPMVKAVPRGFTTAADAYLTPVIARYVASFRSGFDRGFDDVKTLFMQSDGGL
Sbjct:  177 LAAVRGSLQAVLDQGITSLAVVFLHSYTFADHERRVGKLAGEMGFTHVSLSSEVMPMVKAVPRGFTTAADAYLTPVIARYVASFRSGFDRGFDDVKTLFMQSDGGL 282          
BLAST of mRNA_E_fasciculatus_S2_contig7168.15344.1 vs.
Match: Hydantoinase (B/oxoprolinase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBL8_9STRA)

HSP 1 Score: 148 bits (373), Expect = 3.450e-39
Identity = 74/104 (71.15%), Postives = 86/104 (82.69%), Query Frame = 2
Query:    8 AVRGSLQAVLDQGITSLAVVFLHSYTFADHERRVGKLAGEMGFTHVSLSSEVMPMVKAVPRGFTTAADAYLTPVIARYVASFRSGFDRGFDDVKTLFMQSDGGL 319
            A+R  L AVL +G++SLAVVFLHSYT+A HER VG LA +MGF HVSLSSEVMPMVKAVPRG+TTAADAYLTP+I +Y+ASF        DD++TLFMQSDGGL
Sbjct:  128 ALREQLSAVLARGVSSLAVVFLHSYTYAAHERAVGDLARDMGFAHVSLSSEVMPMVKAVPRGYTTAADAYLTPIITQYLASFXXXXXXXXDDIQTLFMQSDGGL 231          
BLAST of mRNA_E_fasciculatus_S2_contig7168.15344.1 vs.
Match: Uncharacterized (protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3S6Q0_TRIAD)

HSP 1 Score: 147 bits (372), Expect = 4.720e-39
Identity = 70/105 (66.67%), Postives = 85/105 (80.95%), Query Frame = 2
Query:    5 EAVRGSLQAVLDQGITSLAVVFLHSYTFADHERRVGKLAGEMGFTHVSLSSEVMPMVKAVPRGFTTAADAYLTPVIARYVASFRSGFDRGFDDVKTLFMQSDGGL 319
            E ++  LQ VLD+GI+SLAVV LHSYTF +HERR+GK+A +MGF HVSLSSEVMPM++AVPRG+T   DAYLTP I  Y+ +F SGFD G  +V+ LFMQSDGGL
Sbjct:  172 EELKSDLQKVLDKGISSLAVVLLHSYTFDEHERRIGKIAQQMGFEHVSLSSEVMPMLRAVPRGYTACVDAYLTPCIDEYIRNFTSGFDEGLKNVRVLFMQSDGGL 276          
BLAST of mRNA_E_fasciculatus_S2_contig7168.15344.1 vs.
Match: 5-oxoprolinase (n=1 Tax=Liparis tanakae TaxID=230148 RepID=A0A4Z2H1Y6_9TELE)

HSP 1 Score: 140 bits (352), Expect = 1.460e-38
Identity = 71/106 (66.98%), Postives = 81/106 (76.42%), Query Frame = 2
Query:    2 LEAVRGSLQAVLDQGITSLAVVFLHSYTFADHERRVGKLAGEMGFTHVSLSSEVMPMVKAVPRGFTTAADAYLTPVIARYVASFRSGFDRGFDDVKTLFMQSDGGL 319
            LE V   L+ VL +GITSLAV+ LHSYTF+DHE+ VG LA  +GFT VSLSSEVMPMV+AVPRG+T  ADAYLTP I +Y+  F SGF  G  DV  LFMQSDGGL
Sbjct:  167 LERVEKDLRGVLSRGITSLAVLLLHSYTFSDHEKAVGALARRLGFTQVSLSSEVMPMVRAVPRGYTVCADAYLTPKIHQYLKGFTSGFKGGLKDVDVLFMQSDGGL 272          
BLAST of mRNA_E_fasciculatus_S2_contig7168.15344.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401QAX7_SCYTO)

HSP 1 Score: 138 bits (347), Expect = 3.190e-38
Identity = 66/106 (62.26%), Postives = 82/106 (77.36%), Query Frame = 2
Query:    2 LEAVRGSLQAVLDQGITSLAVVFLHSYTFADHERRVGKLAGEMGFTHVSLSSEVMPMVKAVPRGFTTAADAYLTPVIARYVASFRSGFDRGFDDVKTLFMQSDGGL 319
            +E + G L  VL +GI SLAVV LHSYTF+ HE+++G+LA  +GF H+SLSSEVMPMV+AVPRG+T  ADAYLTP I RY++ F +GF     DV+ LFMQSDGGL
Sbjct:   82 MEQLEGQLLGVLSRGIQSLAVVLLHSYTFSTHEKQIGELAKRLGFKHISLSSEVMPMVRAVPRGYTACADAYLTPCIKRYLSGFCAGFQDNLKDVRVLFMQSDGGL 187          
BLAST of mRNA_E_fasciculatus_S2_contig7168.15344.1 vs.
Match: OPLA ((Fragment) n=4 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7ESZ4_9TELE)

HSP 1 Score: 135 bits (341), Expect = 1.050e-37
Identity = 68/106 (64.15%), Postives = 81/106 (76.42%), Query Frame = 2
Query:    2 LEAVRGSLQAVLDQGITSLAVVFLHSYTFADHERRVGKLAGEMGFTHVSLSSEVMPMVKAVPRGFTTAADAYLTPVIARYVASFRSGFDRGFDDVKTLFMQSDGGL 319
            LE V   L+ VL +GI+S+AV+ LHSYT++DHE+ VG LA  +GFT VSLSSEVMPMV+AVPRGFT  ADAYLTP I +Y+  F +GF  G  DV  LFMQSDGGL
Sbjct:   82 LEKVEKDLRGVLSRGISSVAVLLLHSYTWSDHEKAVGSLARRLGFTQVSLSSEVMPMVRAVPRGFTVCADAYLTPKIHQYLKGFTAGFKGGLKDVDVLFMQSDGGL 187          
BLAST of mRNA_E_fasciculatus_S2_contig7168.15344.1 vs.
Match: 5-oxoprolinase (n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DMA7_9ASCI)

HSP 1 Score: 142 bits (357), Expect = 4.980e-37
Identity = 69/102 (67.65%), Postives = 80/102 (78.43%), Query Frame = 2
Query:   14 RGSLQAVLDQGITSLAVVFLHSYTFADHERRVGKLAGEMGFTHVSLSSEVMPMVKAVPRGFTTAADAYLTPVIARYVASFRSGFDRGFDDVKTLFMQSDGGL 319
            R  LQ VL +GI SLAV  +HSYT++DHE RVG++A  MG THVSLSSEVMPMVK VPRGFT   DAYLTP I +Y+ +F+SGFD+GF  V  LFMQSDGGL
Sbjct:  177 REDLQRVLSKGIKSLAVALMHSYTYSDHEVRVGEIAKSMGLTHVSLSSEVMPMVKIVPRGFTACVDAYLTPCIKQYLTTFQSGFDKGFKKVNVLFMQSDGGL 278          
BLAST of mRNA_E_fasciculatus_S2_contig7168.15344.1 vs.
Match: Uncharacterized (protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BUI7_9CHLO)

HSP 1 Score: 141 bits (356), Expect = 6.800e-37
Identity = 73/105 (69.52%), Postives = 79/105 (75.24%), Query Frame = 2
Query:    5 EAVRGSLQAVLDQGITSLAVVFLHSYTFADHERRVGKLAGEMGFTHVSLSSEVMPMVKAVPRGFTTAADAYLTPVIARYVASFRSGFDRGFDDVKTLFMQSDGGL 319
            E +R  LQ VLD GITSLAVV  H+  F +HER VG LA  MGFT VSLS EVMPMVK VPRGFT AADAYLTP I RY+A F +GFD G  DV+ LFMQSDGGL
Sbjct:  187 EGLRRDLQKVLDSGITSLAVVLKHAAIFPEHEREVGALARSMGFTQVSLSHEVMPMVKMVPRGFTAAADAYLTPHIRRYLADFTAGFDEGLKDVQVLFMQSDGGL 291          
BLAST of mRNA_E_fasciculatus_S2_contig7168.15344.1 vs.
Match: Uncharacterized (protein n=2 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3GQN2_CALMI)

HSP 1 Score: 140 bits (354), Expect = 6.890e-37
Identity = 70/99 (70.71%), Postives = 79/99 (79.80%), Query Frame = 2
Query:   23 LQAVLDQGITSLAVVFLHSYTFADHERRVGKLAGEMGFTHVSLSSEVMPMVKAVPRGFTTAADAYLTPVIARYVASFRSGFDRGFDDVKTLFMQSDGGL 319
            LQ VL +GI SLAVV LHSYT+ DHER+VG+LA  +GF+HVSLSSEVMPMV+ VPRGFT  ADAYLTP I RY+  FRSGF     DV+ LFMQSDGGL
Sbjct:   50 LQQVLSRGIRSLAVVLLHSYTWPDHERQVGELARRLGFSHVSLSSEVMPMVRVVPRGFTACADAYLTPCIHRYLNGFRSGFQHSLRDVRVLFMQSDGGL 148          
BLAST of mRNA_E_fasciculatus_S2_contig7168.15344.1 vs.
Match: 5-oxoprolinase (n=1 Tax=Anolis carolinensis TaxID=28377 RepID=UPI0007DB6DB3)

HSP 1 Score: 139 bits (349), Expect = 1.150e-36
Identity = 70/106 (66.04%), Postives = 83/106 (78.30%), Query Frame = 2
Query:    2 LEAVRGSLQAVLDQGITSLAVVFLHSYTFADHERRVGKLAGEMGFTHVSLSSEVMPMVKAVPRGFTTAADAYLTPVIARYVASFRSGFDRGFDDVKTLFMQSDGGL 319
            L A+RG LQA+L++GITSLAVV LHSY + +HER+VG LA E+GF  VSLSSEVMPMV+AVPRG+T  ADAYLTP I RY+ SFR GF      V  +FM+SDGGL
Sbjct:  169 LGALRGELQALLERGITSLAVVLLHSYLWPEHERQVGSLAWELGFRQVSLSSEVMPMVRAVPRGYTACADAYLTPCIRRYLDSFRKGFASQLQGVPVMFMRSDGGL 274          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7168.15344.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
5-oxoprolinase1.540e-5999.06(ATP-hydrolysing) 5-oxoprolinase (ATP-hydrolysing)... [more]
Hydantoinase3.450e-3971.15B/oxoprolinase-domain-containing protein n=1 Tax=T... [more]
Uncharacterized4.720e-3966.67protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3S6Q... [more]
5-oxoprolinase1.460e-3866.98n=1 Tax=Liparis tanakae TaxID=230148 RepID=A0A4Z2H... [more]
Uncharacterized3.190e-3862.26protein (Fragment) n=1 Tax=Scyliorhinus torazame T... [more]
OPLA1.050e-3764.15(Fragment) n=4 Tax=Poeciliopsis prolifica TaxID=18... [more]
5-oxoprolinase4.980e-3767.65n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A... [more]
Uncharacterized6.800e-3769.52protein n=1 Tax=Edaphochlamys debaryana TaxID=4728... [more]
Uncharacterized6.890e-3770.71protein n=2 Tax=Callorhinchus milii TaxID=7868 Rep... [more]
5-oxoprolinase1.150e-3666.04n=1 Tax=Anolis carolinensis TaxID=28377 RepID=UPI0... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7168contigE_fasciculatus_S2_contig7168:2029..2982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size322
Hectar predicted targeting categoryother localisation
Exons2
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842379.4548469-CDS-E_fasciculatus_S2_contig7168:2028..22711696842379.4548469-CDS-E_fasciculatus_S2_contig7168:2028..2271Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7168 2029..2271 -
1696842379.4689581-CDS-E_fasciculatus_S2_contig7168:2904..29821696842379.4689581-CDS-E_fasciculatus_S2_contig7168:2904..2982Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7168 2905..2982 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7168.15344.1prot_E_fasciculatus_S2_contig7168.15344.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7168 2029..2982 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7168.15344.1

>prot_E_fasciculatus_S2_contig7168.15344.1 ID=prot_E_fasciculatus_S2_contig7168.15344.1|Name=mRNA_E_fasciculatus_S2_contig7168.15344.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=107bp
PGGRARQPPGRAGPGHHQPCRRVSAQLHVRGPRAARGQARGRDGVHARVA
VVGGDAHGQGGPAGLHHRRRRLPDSGHRALRRLLPLGLRPGLRRRQDPLH
AERRRPD
back to top

mRNA from alignment at E_fasciculatus_S2_contig7168:2029..2982-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7168.15344.1 ID=mRNA_E_fasciculatus_S2_contig7168.15344.1|Name=mRNA_E_fasciculatus_S2_contig7168.15344.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=954bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7168:2029..2982- (Ectocarpus fasciculatus EfasUO2)
CCTGGAGGCCGTGCGCGGCAGCCTCCAGGCCGTGCTGGACCAGGGCATCA CCAGCCTTGCCGTCGTGTTTCTGCACAGGTGAAGCCTGGGGCAGGGTCGA TTCTCGTCGTCATCCGTCCATCGCCCGTGGTGGTTCTTGTCAGGTTTTCT ATGTTTTTTTCGCGTGAGCTTTTGCGCGTTTTCAATGCCGTGGTAGGTCA AAAGAGATTGTTGAGGCTCAAGCGGAGGGAACCGGGGGCGTCTGCCTATG GTTGGGGGTTGGGTCAGAGTGGTTCGTGGCACCTCTGGCAACTGGGATGG GATACAGCAGGTTGTGGTATTCAACCGTTCCGTACGTGAGAGCACAAACC GGATGGATAGCGGACGGTGTACCACCCCCCCCAGAAAGTCCACTGGTGTG CCAATTGCTGGCGGAACATCGAGTTTGCTTGCCCTGCCGGCATGGCCACA GCGGAACTTTTTTTTACAGCCATCTCTGTCAGTATTCTCTCGATTCCATC AAAAGACGTAGAATAAAACCACCATACACACGTTTCGTTTTTTAGTGACA GTGGCCATATCCCCCCCCCCCCCCCCCCTTTCCGCGACTACCTATATTCC GCACGGCGTGCTTCAACCTTCGTTTTGGCGAATTGTTTTGATTCGTGCTT CGCGACGACGACAACAACAACAACAACAACAACAACATCGCCTCCACATC CCGGGGTCAAGCTACACGTTCGCGGACCACGAGCGGCGCGTGGGCAAGCT CGCGGGAGAGATGGGGTTCACGCACGTGTCGCTGTCGTCGGAGGTGATGC CCATGGTCAAGGCGGTCCCGCGGGGCTTCACCACCGCCGCCGACGCCTAC CTGACTCCGGTCATCGCGCGCTACGTCGCCTCCTTCCGCTCGGGCTTCGA CCGGGGCTTCGACGACGTCAAGACCCTCTTCATGCAGAGCGACGGCGGCC TGAC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7168:2029..2982-

>mRNA_E_fasciculatus_S2_contig7168.15344.1 ID=mRNA_E_fasciculatus_S2_contig7168.15344.1|Name=mRNA_E_fasciculatus_S2_contig7168.15344.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=321bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7168:2029..2982- (Ectocarpus fasciculatus EfasUO2)
CCTGGAGGCCGTGCGCGGCAGCCTCCAGGCCGTGCTGGACCAGGGCATCA
CCAGCCTTGCCGTCGTGTTTCTGCACAGCTACACGTTCGCGGACCACGAG
CGGCGCGTGGGCAAGCTCGCGGGAGAGATGGGGTTCACGCACGTGTCGCT
GTCGTCGGAGGTGATGCCCATGGTCAAGGCGGTCCCGCGGGGCTTCACCA
CCGCCGCCGACGCCTACCTGACTCCGGTCATCGCGCGCTACGTCGCCTCC
TTCCGCTCGGGCTTCGACCGGGGCTTCGACGACGTCAAGACCCTCTTCAT
GCAGAGCGACGGCGGCCTGAC
back to top