mRNA_E_fasciculatus_S2_contig7153.15331.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7153.15331.1
Unique NamemRNA_E_fasciculatus_S2_contig7153.15331.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7153.15331.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCZ3_ECTSI)

HSP 1 Score: 995 bits (2573), Expect = 0.000e+0
Identity = 510/524 (97.33%), Postives = 516/524 (98.47%), Query Frame = 1
Query:    1 AAVTAGSMLWWHRGVPQFLMDQYRYDDEVGDGGGDGGASKPYNIVCTQPRRISAIGVAERVAAERGEAVGGTVGYQIRLERRASEHTKLLFVTTGILLRRLQADPQLEGVTHVILDEVHERTVDSDFLIIILRDLVLQRKDLTLVLMSATLNADLFSNYFSQAPKLNIPGYTFPVEEYYLEDALELTRTHITPTVNRQGRVKRKPLDREQFGEKMSKLEHLRGRYSPRTLQSMAMFDESEVPLDVIVDLVRHVHAYEGEGAILIFLSGWEEISAVHDRLEALQEARAWRLYALHSQMPTSQQRDVFLRPPRGIRKIVIATNIAESSITIDDVVYVIDGGKHKEKSYDPEAKVQSLLPAWVSQASSKQRRGRAGRVQPGRCWHVYPRSKVSEMNEYQLPEIVRTSLESLCLQVRHLGLAAVGKGGVAGFINKALTPPGVVALDNALTLLTRIGAFRTNESLTPLGKHLALLPVEPQIGKALVLGCMLGCLDPVLTIAALLSQRNPFVMPMSKKEQADQAKRRFAQ 1572
            AAVTAGSMLWWH+ VPQFLMDQYRYD + GDGG DGGASKPYNIVCTQPRRISAIGVAERVAAERGEAVGGTVGYQIRLERRASEHTKLLFVTTGILLRRLQADPQLEGVTHVILDEVHERTVDSDFLIIILRDLVLQRKDLTLVLMSATLNADLFSNYFSQAPKLNIPGYTFPVEEYYLEDALELTRT ITPTVNRQGRVKRKPLDREQFG+KMSKLEHLRGRYS RTLQSMAMFDESEVPLDVIVDLVRHVHAYEGEGAILIFLSGWEEISAVHD+LEAL EARAWRLYALHSQMPTSQQRDVFLRPPRG+RKIVIATNIAESSITIDDVVYVIDGGKHKEKSYDPEAKVQSLLPAWVSQASSKQRRGRAGRVQPGRCWHVYPRSKVSEMNEYQLPEIVRTSLESLCLQVRHLGLAA GKGGVAGFINKALTPPGVVALDNALTLLTRIGAFRTNESLTPLGKHLALLPVEPQIGKALVLGCMLGCLDPVLTIAALLSQRNPFVMPMSKKE+ADQAKRRFAQ
Sbjct:  185 AAVTAGSMLWWHQ-VPQFLMDQYRYDGDGGDGGXDGGASKPYNIVCTQPRRISAIGVAERVAAERGEAVGGTVGYQIRLERRASEHTKLLFVTTGILLRRLQADPQLEGVTHVILDEVHERTVDSDFLIIILRDLVLQRKDLTLVLMSATLNADLFSNYFSQAPKLNIPGYTFPVEEYYLEDALELTRTQITPTVNRQGRVKRKPLDREQFGQKMSKLEHLRGRYSQRTLQSMAMFDESEVPLDVIVDLVRHVHAYEGEGAILIFLSGWEEISAVHDKLEALPEARAWRLYALHSQMPTSQQRDVFLRPPRGVRKIVIATNIAESSITIDDVVYVIDGGKHKEKSYDPEAKVQSLLPAWVSQASSKQRRGRAGRVQPGRCWHVYPRSKVSEMNEYQLPEIVRTSLESLCLQVRHLGLAAGGKGGVAGFINKALTPPGVVALDNALTLLTRIGAFRTNESLTPLGKHLALLPVEPQIGKALVLGCMLGCLDPVLTIAALLSQRNPFVMPMSKKEEADQAKRRFAQ 707          
BLAST of mRNA_E_fasciculatus_S2_contig7153.15331.1 vs.
Match: ATP-dependent (RNA helicase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GQJ2_9STRA)

HSP 1 Score: 511 bits (1316), Expect = 5.780e-169
Identity = 294/545 (53.94%), Postives = 372/545 (68.26%), Query Frame = 1
Query:   43 VPQFLMDQYRYDDEVGDGGGDGGASKPYNIVCTQPRRISAIGVAERVAAERGEAVG-GTVGYQIRLERRASEHTKLLFVTTGILLRRLQADPQLEGVTHVILDEVHERTVDSDFLIIILRDLVLQRKDLTLVLMSATLNADLFSNYF-----SQAPKLNIPGYTFPVEEYYLEDALELTR-THITPTVNRQGRVKR--------------------KPLDREQFGEKMSKLEHLRGRYSPRTLQS-MAMFDESEVPLDVIVDLVRHVHAY----EGEG-AILIFLSGWEEISAVHDRLEALQEAR-AWRLYALHSQMPTSQQRDVFLRPPRGIRKIVIATNIAESSITIDDVVYVIDGGKHKEKSYDPEAKVQSLLPAWVSQASSKQRRGRAGRVQPGRCWHVYPRSKVSE-MNEYQLPEIVRTSLESLCLQVRHLGLAAVGKGGVAGFINKALTPPGVVALDNALTLLTRIGAF-RTNESLTPLGKHLALLPVEPQIGKALVLGCMLGCLDPVLTIAALLSQRNPFVMPMSKKEQADQAKRRFA 1569
            VPQFL+D +    E              NIVCTQPRRISAIGV+ERVA ERGE VG G VGYQIRLERRA+EHT++LF TTG+LLRRLQ DP L+ VTH+ILDEVHER++DSDFLI+ILRDL+ +RKDL +VLMSATL+AD+F+ YF     S+ P L+IPG TFPVE  YLEDA+E T  T ++   +   R                         L ++Q+      LE   G YS  T+++ +  F+E E+PL ++  L+ H+       E EG A+LIFL GWE+I  +HD+LE L  +   W L+ LH  M T+QQR +F  PP G RK+++ATNIAESSITIDDV +VID  KHKEK+YDP A +  LLP WVS+AS+ QRRGRAGRV+ G+CWH+ PR  V +   E+ LPE+VRT LE LCLQVR L +A   KGG+  F+N+ALTPP   +L NA+ LL RIGA  R +E+LT LG+ LA LPV PQIGK+L++GC+LGCL+P+LT+ A+LSQR  FV P+  KE AD+AK  FA
Sbjct:  142 VPQFLLDDFWARGEH------------CNIVCTQPRRISAIGVSERVAKERGENVGTGKVGYQIRLERRANEHTRMLFCTTGLLLRRLQVDPSLDDVTHIILDEVHERSIDSDFLIVILRDLLARRKDLRVVLMSATLDADMFAKYFETAFESKVPVLHIPGRTFPVEALYLEDAVEATGCTDLSAEGSSGSRXXXXXXXXXXXXXXXXXXXXXXXSDLQQQQYVALKRSLER-DGMYSSGTVRAVLENFNEEEIPLQLVGQLLTHIDEAHPMDESEGHAVLIFLPGWEDIRKLHDQLEFLNASHHRWALFPLHGAMGTAQQRGIFAPPPAGKRKVILATNIAESSITIDDVSFVIDSCKHKEKTYDPVANISCLLPTWVSRASALQRRGRAGRVRAGKCWHLVPRLHVEDNFAEHALPEMVRTPLEELCLQVRALEVAPKRKGGLLWFLNRALTPPAEQSLVNAIDLLNRIGALTREDEALTALGRCLATLPVGPQIGKSLIMGCVLGCLEPILTLTAILSQRTIFVAPLQSKEAADKAKAAFA 673          
BLAST of mRNA_E_fasciculatus_S2_contig7153.15331.1 vs.
Match: RNA (helicase n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XFW7_MARPO)

HSP 1 Score: 499 bits (1285), Expect = 1.320e-162
Identity = 270/520 (51.92%), Postives = 368/520 (70.77%), Query Frame = 1
Query:   43 VPQFLMDQYRYDDEVGDGGGDGGASKPYNIVCTQPRRISAIGVAERVAAERGEAVGGTVGYQIRLERRASEHTKLLFVTTGILLRRLQADPQLEGVTHVILDEVHERTVDSDFLIIILRDLVLQRKDLTLVLMSATLNADLFSNYFSQAPKLNIPGYTFPVEEYYLEDALELTRTHI----TPTVNRQG---RVKRKPLDREQFGEKMSKLEHLRGRYSPRTLQSMAMFDESEVPLDVIVDLVRHVHAYEGE-GAILIFLSGWEEISAVHDRLEA---LQEARAWRLYALHSQMPTSQQRDVFLRPPRGIRKIVIATNIAESSITIDDVVYVIDGGKHKEKSYDPEAKVQSLLPAWVSQASSKQRRGRAGRVQPGRCWHVYPRSKVSEMNEYQLPEIVRTSLESLCLQVRHLGLAAVGKGGVAGFINKALTPPGVVALDNALTLLTRIGAFRTNESLTPLGKHLALLPVEPQIGKALVLGCMLGCLDPVLTIAALLSQRNPFVMPMSKKEQADQAKRRFA 1569
            +PQFL++Q     EV     + G     NI+CTQPRRISA+ VA RVAAERG+A+G +VGYQIRLE + SE+T+LLF TTG+LLRRL  +P+L GV+HV++DE+HER ++ DFL+IILRDL+ +R DL LVLMSAT+NA+LFS YF  AP ++IPG+TFPV+E +LED LE TR  +     P+ N  G   R + K  D      + + ++    RYS  T  S+  ++  E+ L ++   + H+   E E GA+L+FL+GW++IS + ++L+A   L  A  + L  LH  MPT  QR++F  PPRG+RKIV+ATNIAE+SITIDDVVYVID GK KE SYD   K+  LLP+W+S+AS+ QRRGRAGRV+ G C+H+YP+    EM ++QLPEI+RT L+ LCLQ++ LGL ++G      F++KAL PP  +A+ NA+ LL  IGA    E LTPLG HLA LPV+P++GK L++G +  CL P LTIAA L+ R+PFV+P+ +KE+AD+++RRFA
Sbjct:  319 LPQFLLEQ-----EV-----EAGRGSKCNIICTQPRRISAMSVAARVAAERGDALGQSVGYQIRLESKRSENTRLLFCTTGVLLRRLVQEPELAGVSHVMVDEIHERGMNEDFLLIILRDLLPRRPDLRLVLMSATINAELFSKYFGNAPMMHIPGFTFPVQELFLEDVLEKTRYRVGADQQPSSNYGGQRRRTQEKKRDPITQAFENADIDAEFRRYSRGTQLSLKAWNGDELDLGLVESTIEHICERESEEGALLVFLTGWDDISKLMEKLKANAALGNASRYLLLPLHGSMPTINQREIFQPPPRGVRKIVLATNIAETSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVRAGVCYHLYPKLVYDEMLKFQLPEILRTPLQELCLQIKSLGLGSIGN-----FLSKALQPPEAMAVQNAIDLLKTIGALDDKEDLTPLGSHLAQLPVDPKVGKMLLMGAVFQCLGPALTIAAALAHRDPFVLPIERKEEADESRRRFA 823          
BLAST of mRNA_E_fasciculatus_S2_contig7153.15331.1 vs.
Match: DExH-box (ATP-dependent RNA helicase DExH1 isoform X1 n=4 Tax=Ipomoea TaxID=4119 RepID=UPI00125E169F)

HSP 1 Score: 495 bits (1275), Expect = 1.110e-161
Identity = 260/492 (52.85%), Postives = 352/492 (71.54%), Query Frame = 1
Query:  127 NIVCTQPRRISAIGVAERVAAERGEAVGGTVGYQIRLERRASEHTKLLFVTTGILLRRLQADPQLEGVTHVILDEVHERTVDSDFLIIILRDLVLQRKDLTLVLMSATLNADLFSNYFSQAPKLNIPGYTFPVEEYYLEDALELTRTHITPTV-NRQGRVKRKPLDREQFGEKMSKL-------EHLRGRYSPRTLQSMAMFDESEVPLDVIVDLVRHVHAYEGEGAILIFLSGWEEISAVHDRLEA---LQEARAWRLYALHSQMPTSQQRDVFLRPPRGIRKIVIATNIAESSITIDDVVYVIDGGKHKEKSYDPEAKVQSLLPAWVSQASSKQRRGRAGRVQPGRCWHVYPRSKVSEMNEYQLPEIVRTSLESLCLQVRHLGLAAVGKGGVAGFINKALTPPGVVALDNALTLLTRIGAFRTNESLTPLGKHLALLPVEPQIGKALVLGCMLGCLDPVLTIAALLSQRNPFVMPMSKKEQADQAKRRFA 1569
            NI+CTQPRRISAI VA R+++ERGE +G TVGYQIRLE + S  T+LLF TTG+LLR+L  DP + G+TH+++DE+HER +D DFL+IILRDL+ +R DL L+LMSAT+NA+LFS YF  AP ++IPG T+PV E +LED LE TR  I P   N QG  +R+   +E   + +++L        H +G YS  T QS+  +  S++ L ++   ++H+  +EG+GAIL+FL+GW++IS + D+++    L + R + +  LH  MPT  QR++F RPP  +RKIV+ATNIAESSITIDDVVYVID GK KE SYD   K+  LLP+W+S+AS+ QRRGRAGRVQPG C+ +YP+     M EYQLPEI+RT L+ LCL ++ L L     G ++ F+NKAL PP  +++ NA+ LL  IGA    E LTPLG+HL  LP++P IGK L++G    CL+P LTIAA L+ R+PFV+P+++KE+AD AKR FA
Sbjct:  321 NIICTQPRRISAISVAARISSERGENLGETVGYQIRLESKRSAETRLLFCTTGVLLRQLVRDPYITGITHLLVDEIHERGMDEDFLLIILRDLLPRRPDLRLILMSATINAELFSKYFGNAPTIHIPGLTYPVSELFLEDVLEKTRYRIKPEFDNVQGNSRRRHRQQESKKDPLTELFEDVDIDSHYKG-YSMTTRQSLETWSGSQLDLGLVEATIQHICCHEGDGAILVFLTGWDDISKLLDKIKVNNFLGDPRKFLVLPLHGSMPTVNQREIFDRPPPNVRKIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYRLYPKLLHDAMLEYQLPEILRTPLQELCLHIKSLQL-----GAISSFLNKALQPPDPLSVQNAIELLRTIGALDDAEELTPLGRHLCTLPLDPNIGKMLLMGSFFRCLNPALTIAAALAYRDPFVLPINRKEEADAAKRSFA 806          
BLAST of mRNA_E_fasciculatus_S2_contig7153.15331.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WNW9_9STRA)

HSP 1 Score: 497 bits (1280), Expect = 5.400e-161
Identity = 277/538 (51.49%), Postives = 372/538 (69.14%), Query Frame = 1
Query:   43 VPQFLMDQYRYDDEVGDGGGDGGASKPYNIVCTQPRRISAIGVAERVAAERGEAVG----GTVGYQIRLERRASEHTKLLFVTTGILLRRLQADPQLEGVTHVILDEVHERTVDSDFLIIILRDLVLQRKDLTLVLMSATLNADLFSNYFSQA-----PKLNIPGYTFPVEEYYLEDALELTRTHITPTVNRQGRVKRKPL---------DREQFGEKMSKLEHL----RGRYSPRTLQSMA-MFDESEVPLDVIVDLV----RHVHAYEGEG-AILIFLSGWEEISAVHDRLEAL-QEARAWRLYALHSQMPTSQQRDVFLRPPRGIRKIVIATNIAESSITIDDVVYVIDGGKHKEKSYDPEAKVQSLLPAWVSQASSKQRRGRAGRVQPGRCWHVYPRSKV-SEMNEYQLPEIVRTSLESLCLQVRHLGLAAVGKGGVAGFINKALTPPGVVALDNALTLLTRIGAFRTNESLTPLGKHLALLPVEPQIGKALVLGCMLGCLDPVLTIAALLSQRNPFVMPMSKKEQADQAKRRF 1566
            VPQF++D     +E              NI+CTQPRRISA+GVA+RVA+ERGE +G    G VGYQIRLERR ++ T+L+F TTG+LLRRLQ DP LE VTH++LDEVHER++DSDFLI+ILRDL+++RKDL +V+MSATLNA+ F++YF+++     P LNIPG TFPV+ +YLEDA+ELT  H + T +  G  KR               Q GE+  +LE+     R RYS RT+ ++   FD S++P++VI  L+    R     + +G A+L+FL GWE+I   ++ LE   ++ + W L  LH  M T+ Q+ +F RPP G RK+V+ATNIAESSITIDDV +VID  KHKEK+YD E  +  LLP WVS+AS+ QRRGRAGRV+ G+ WH+ P+    +E ++Y LPEIVRT L+ LC+Q+R LGLA  G GGV  F+NKA+TPP   + +NA+ LL RIGAF  +E LT +G  LA LP+ PQIGK+L++ C+LGCL+PV+ + ++LSQR  F+  + KKE+AD AK  F
Sbjct:  265 VPQFILDDAWSRNEH------------CNIICTQPRRISAMGVADRVASERGENLGRQPNGVVGYQIRLERRVTDLTRLMFCTTGVLLRRLQVDPDLENVTHIVLDEVHERSIDSDFLIVILRDLLVRRKDLRIVMMSATLNAETFASYFAKSLDVDIPILNIPGRTFPVDAFYLEDAIELTNCH-SMTDDPMGGQKRSNYGGGGRNNSKQPTQSGEQKRELENSLMTSRKRYSARTVATVCDEFDPSKIPIEVIRALIETIDRDYPVDDKDGHAVLVFLPGWEDIRKTNELLEERNKQHKKWLLCPLHGMMGTADQKKIFNRPPPGKRKVVLATNIAESSITIDDVAFVIDSAKHKEKTYDEELNIACLLPTWVSKASASQRRGRAGRVRAGKAWHLVPKHMHDTEFDDYALPEIVRTPLDQLCMQIRALGLAKPGDGGVLEFLNKAITPPSEKSSENAVELLKRIGAFDQSEGLTAMGSCLATLPMGPQIGKSLIMACILGCLEPVVLLTSMLSQRTIFISTLDKKEEADAAKHTF 789          
BLAST of mRNA_E_fasciculatus_S2_contig7153.15331.1 vs.
Match: RNA (helicase n=2 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9HFP8_9LAMI)

HSP 1 Score: 491 bits (1264), Expect = 1.540e-160
Identity = 262/494 (53.04%), Postives = 354/494 (71.66%), Query Frame = 1
Query:  127 NIVCTQPRRISAIGVAERVAAERGEAVGGTVGYQIRLERRASEHTKLLFVTTGILLRRLQADPQLEGVTHVILDEVHERTVDSDFLIIILRDLVLQRKDLTLVLMSATLNADLFSNYFSQAPKLNIPGYTFPVEEYYLEDALELTRTHIT------PTVNRQGR----VKRKPLDREQFGEKMSKLEHLRGRYSPRTLQSMAMFDESEVPLDVIVDLVRHVHAYEGEGAILIFLSGWEEISAVHDRLEA---LQEARAWRLYALHSQMPTSQQRDVFLRPPRGIRKIVIATNIAESSITIDDVVYVIDGGKHKEKSYDPEAKVQSLLPAWVSQASSKQRRGRAGRVQPGRCWHVYPRSKVSEMNEYQLPEIVRTSLESLCLQVRHLGLAAVGKGGVAGFINKALTPPGVVALDNALTLLTRIGAFRTNESLTPLGKHLALLPVEPQIGKALVLGCMLGCLDPVLTIAALLSQRNPFVMPMSKKEQADQAKRRFA 1569
            NI+CTQPRRISAI VA R+++ERGE +G TVGYQIRLE + S  T+LLF TTG+LLR+L  DP L GVTH+++DE+HER ++ DFL+IILRD++ +R DL L+LMSAT+NADLFS YF  AP ++IPG TFPV+E+YLED LE TR  I       P  +R+GR     K  PL  E F +  + ++ L   YS  T +S+  +  S++ L ++   + H+   EG GAIL+FL+GW++IS + D+L+A   L +   + L ALH  MPT  QR++F RPP  +RKIV+ATNIAESSITIDDVVYV+D GK KE SYD   K+  LLP+W+S+AS+ QRRGRAGRVQPG C+ +YP+     M++YQLPE++RT L+ LCL ++ L L     G ++ F++KAL PP  ++++NA+ LL  IGA    E LTPLG+HL  LP++P IGK L++G +  CL+P LTIAA L+ R+PFV+P+++KE+AD AKR FA
Sbjct:  275 NIICTQPRRISAISVAARISSERGEKLGETVGYQIRLESKQSAQTRLLFCTTGVLLRQLVQDPDLTGVTHLLVDEIHERGMNEDFLLIILRDILPRRPDLRLILMSATINADLFSKYFGNAPTIHIPGLTFPVKEFYLEDVLEKTRYSIQSEFDNFPGNSRRGRRLQESKEDPLT-ELFED--ADIDALYKGYSTSTRRSLEAWSGSQLDLGLVEATIEHICRNEGSGAILVFLTGWDDISKLLDKLKANNILGDPNKFLLLALHGSMPTINQREIFGRPPPNVRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYRLYPKMIHDAMSQYQLPEMLRTPLQELCLHIKSLQL-----GEISNFLSKALQPPDPLSVENAIELLKTIGALDDREELTPLGRHLCTLPLDPNIGKMLLMGAIFRCLNPALTIAAALAHRDPFVLPINRKEEADAAKRSFA 760          
BLAST of mRNA_E_fasciculatus_S2_contig7153.15331.1 vs.
Match: Hypothetical (protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6CK03_9RHOD)

HSP 1 Score: 489 bits (1258), Expect = 1.720e-160
Identity = 269/530 (50.75%), Postives = 366/530 (69.06%), Query Frame = 1
Query:   43 VPQFLMDQYRYDDEVGDGGGDGGASKPYNIVCTQPRRISAIGVAERVAAERGEAVGGTVGYQIRLERRASEHTKLLFVTTGILLRRLQADPQLEGVTHVILDEVHERTVDSDFLIIILRDLVLQ-RKDLTLVLMSATLNADLFSNYFSQAPKLNIPGYTFPVEEYYLEDALELTRTHITPTV-------NRQGRVKRKPLDREQFGEKMSKLEH---LRG-RYSPRTLQSMAMFD-ESEVPLDVIVDLVRHVHAYEGEGAILIFLSGWEEISAVHDRLE---ALQEARAWRLYALHSQMPTSQQRDVFLRPPRGIRKIVIATNIAESSITIDDVVYVIDGGKHKEKSYDPEAKVQSLLPAWVSQASSKQRRGRAGRVQPGRCWHVYPRSKVSEMNEYQLPEIVRTSLESLCLQVRHLGLAAVGKGGVAGFINKALTPPGVVALDNALTLLTRIGAFRTN-ESLTPLGKHLALLPVEPQIGKALVLGCMLGCLDPVLTIAALLSQRNPFVMPMSKKEQADQAKRRFAQVLI 1581
            VPQF++D  +               +   I+CTQPRRISA+ VAERVAAERG ++G  VGYQIRLE + S+ T+LLF TTGILLRRLQ+DP L GVTHVI+DE+HERT+++DFL+IILRDL+    K++ ++LMSATLNA +F+ YF   P ++IPG+T+PV EY+LED +E+T      +        +++ R K K +      E++  LE    + G RYS  TL+S+A    E  + LD+I +++ H+     +GA+LIFL GW++IS + D+L+     ++A  +++  LHS +PT  QR +F RPP GIRKI+++TNIAE+SIT+DDVV+VID GK KEK+YD    V  LLPA+VS+ASS+QRRGRAGR+QPG C+H++     + M +YQLPEI+RT LESLCLQV+ L L  V K     F++KAL PP   A +NA+ LL  IGA  T+ E LTPLGKHL+  P++P++GK L+   +  CLDPVLTIAA L  RNPFVMP+++KE+AD+ K RFA  L 
Sbjct:  105 VPQFILDNTK---------------ERSFIICTQPRRISAVSVAERVAAERGSSIGAEVGYQIRLESQTSKETRLLFCTTGILLRRLQSDPSLNGVTHVIVDEIHERTLEADFLLIILRDLIRSTNKNVRVILMSATLNAGMFAQYFDDCPTVHIPGFTYPVTEYFLEDIIEMTGFQFRESQGGSFRPRDQRSREKAKQMRNRNPAEEIEHLERSLSVNGKRYSNSTLESLANAAFEDNISLDLIEEILIHIVEKNEDGAVLIFLPGWDDISKLCDKLKNNVRFRDASKYQILPLHSSLPTVNQRQIFERPPPGIRKIIVSTNIAETSITVDDVVFVIDSGKFKEKTYDAATNVSCLLPAFVSKASSRQRRGRAGRIQPGFCFHLFSSIDHANMEDYQLPEILRTPLESLCLQVKALKLGVVSK-----FLSKALEPPDPRATNNAMELLRVIGALYTDREELTPLGKHLSNFPLDPRLGKMLIYAVIFSCLDPVLTIAASLGFRNPFVMPLNRKEEADETKMRFATGLF 614          
BLAST of mRNA_E_fasciculatus_S2_contig7153.15331.1 vs.
Match: RNA (helicase n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UCH6_9CHLO)

HSP 1 Score: 489 bits (1260), Expect = 2.570e-160
Identity = 266/520 (51.15%), Postives = 360/520 (69.23%), Query Frame = 1
Query:   43 VPQFLMDQYRYDDEVGDGGGDGGASKPYNIVCTQPRRISAIGVAERVAAERGEAVGGTVGYQIRLERRASEHTKLLFVTTGILLRRLQADPQLEGVTHVILDEVHERTVDSDFLIIILRDLVLQRKDLTLVLMSATLNADLFSNYFSQAPKLNIPGYTFPVEEYYLEDALELTRTHITPTVNRQGRVKRKPLDREQFGEKMSKLEHLR------GRYSPRTLQSMAMF---DESEVPLDVIVDLVRHVHAYEGEGAILIFLSGWEEISAVHDRLE---ALQEARAWRLYALHSQMPTSQQRDVFLRPPRGIRKIVIATNIAESSITIDDVVYVIDGGKHKEKSYDPEAKVQSLLPAWVSQASSKQRRGRAGRVQPGRCWHVYPRSKVSEMNEYQLPEIVRTSLESLCLQVRHLGLAAVGKGGVAGFINKALTPPGVVALDNALTLLTRIGAFRTNESLTPLGKHLALLPVEPQIGKALVLGCMLGCLDPVLTIAALLSQRNPFVMPMSKKEQADQAKRRF 1566
            +PQFL++Q   +             +  NI+CTQPRRISAI VA+RVA ERGEA+G  VGYQIR+E + S HT+LLF TTG+LLRRL +DP L+ VTHVI+DE+HER ++ DFL+I+LRDL+  R DL L+LMSATLN +LFSNYF+QAP ++IPG+T+PV++ +LED LE ++  +    N+    KR   DRE+ G +      L         +S RT++S++ +    E  V L++    + H+   EG GAIL+FL+GW+EIS + D  +    L +A    +  LH  MPT+ QR +F RPP+ IRKIV+ATNIAE+SITIDDVVYV+D GK KEK+YD   K+  LLP W+S+A+ KQRRGRAGR Q G+C+H++PR     M EYQ+PE++RT LE LCLQ++ L L     GGV  F+ KA+TPP   ++ N+L  L  IGA   +E LTPLGKHLA LPV+P IGK L+LG +LGCL+PVLT+AA ++ R+PF++P+ KK++AD  K+ F
Sbjct:  152 LPQFLLEQAVEER----------TEESTNIICTQPRRISAISVAQRVANERGEALGERVGYQIRMESKRSMHTRLLFCTTGVLLRRLASDPLLKDVTHVIVDEIHERGMNEDFLLIVLRDLLPVRPDLKLILMSATLNPELFSNYFNQAPVMHIPGFTYPVQDVFLEDILEESKYTVQDKSNKNSTSKRW-YDREKKGGQNEGQADLGFDPADYSSFSSRTVRSLSTWYSNKEKGVDLELAEAAITHIAQTEGNGAILVFLTGWDEISKLFDACKLNPVLGDASRCTVLPLHGSMPTTSQRQIFERPPKDIRKIVLATNIAETSITIDDVVYVVDCGKAKEKTYDVVNKLACLLPTWISRAAVKQRRGRAGRCQAGKCYHLFPRRLHESMEEYQMPELLRTPLEELCLQIKSLQL-----GGVEPFLAKAVTPPDGRSVHNSLERLRFIGALDADEDLTPLGKHLAHLPVDPSIGKMLILGAVLGCLNPVLTVAAGMAYRDPFILPLDKKKEADMVKQGF 655          
BLAST of mRNA_E_fasciculatus_S2_contig7153.15331.1 vs.
Match: RNA (helicase n=4 Tax=Punica granatum TaxID=22663 RepID=A0A218X214_PUNGR)

HSP 1 Score: 491 bits (1264), Expect = 6.190e-160
Identity = 261/516 (50.58%), Postives = 364/516 (70.54%), Query Frame = 1
Query:   43 VPQFLMDQYRYDDEVGDGGGDGGASKPYNIVCTQPRRISAIGVAERVAAERGEAVGGTVGYQIRLERRASEHTKLLFVTTGILLRRLQADPQLEGVTHVILDEVHERTVDSDFLIIILRDLVLQRKDLTLVLMSATLNADLFSNYFSQAPKLNIPGYTFPVEEYYLEDALELTRTHI-TPTVNRQGRVKRKPLDREQFGEKMSK---LEHLRGRYSPRTLQSMAMFDESEVPLDVIVDLVRHVHAYEGEGAILIFLSGWEEISAVHDRLEA---LQEARAWRLYALHSQMPTSQQRDVFLRPPRGIRKIVIATNIAESSITIDDVVYVIDGGKHKEKSYDPEAKVQSLLPAWVSQASSKQRRGRAGRVQPGRCWHVYPRSKVSEMNEYQLPEIVRTSLESLCLQVRHLGLAAVGKGGVAGFINKALTPPGVVALDNALTLLTRIGAFRTNESLTPLGKHLALLPVEPQIGKALVLGCMLGCLDPVLTIAALLSQRNPFVMPMSKKEQADQAKRRFA 1569
            +PQF+M++        D           NI+CTQPRRISAI VA R+++ERGEA+G TVGYQIRLE + S  T+LLF TTG+LLRRL  +P+L GV+H+++DE+HER ++ DFL+IILRDL+ +R DL ++LMSAT+NADLFS YF+ AP ++IPG+TFPVEE++LED LE TR +I + + N QG  +R     E   + +++   ++    +YS    QS+  +  SE+ L ++   ++++  +EG+GAIL+FL+GW++IS + D+++    L +   + +  LH  MPT  Q+++F RPP   RKIV+ATNIAESSITIDDVVYVID GK KE SYD   K+  LLP+W+S+AS++QRRGRAGRVQPG C+ +YPR     M +YQLPEI+RT L+ LCL ++ L L ++G      F++KAL PP  +A+ NA+ LL  IGA    E LTPLG+HL  LPV+P IGK L++G +  CL+P LTIAA L+ R+PFV+P+++KE+AD  KR FA
Sbjct:  310 LPQFIMEEEISSLRGAD----------CNIICTQPRRISAISVAARISSERGEALGETVGYQIRLESKHSAETRLLFCTTGVLLRRLAQEPELTGVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRVILMSATINADLFSKYFADAPMMHIPGFTFPVEEFFLEDVLEKTRYNIQSESDNFQGNSRRXXXXXESKKDPLTENVDIDSHYKKYSTTARQSLEAWSGSELDLGLVEATIQYICRHEGDGAILVFLTGWDDISKLLDKVKINNLLGDTNKFLVLPLHGSMPTVNQQEIFDRPPPNKRKIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASARQRRGRAGRVQPGVCYRLYPRIVHDAMPQYQLPEILRTPLQELCLHIKSLQLGSIGS-----FLSKALQPPDPLAVQNAIELLKTIGALDDKEELTPLGRHLCTLPVDPNIGKMLLMGSIFQCLNPALTIAAALAYRDPFVLPINRKEEADAVKRSFA 810          
BLAST of mRNA_E_fasciculatus_S2_contig7153.15331.1 vs.
Match: RNA (helicase n=2 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5EEX1_AQUCA)

HSP 1 Score: 490 bits (1261), Expect = 7.000e-160
Identity = 259/485 (53.40%), Postives = 350/485 (72.16%), Query Frame = 1
Query:  127 NIVCTQPRRISAIGVAERVAAERGEAVGGTVGYQIRLERRASEHTKLLFVTTGILLRRLQADPQLEGVTHVILDEVHERTVDSDFLIIILRDLVLQRKDLTLVLMSATLNADLFSNYFSQAPKLNIPGYTFPVEEYYLEDALELTRTHITPTVNR-QGRVKRKPLDREQFGEKMSKLEHLRGRYSPRTLQSMAMFDESEVPLDVIVDLVRHVHAYEGEGAILIFLSGWEEISAVHDRLEA---LQEARAWRLYALHSQMPTSQQRDVFLRPPRGIRKIVIATNIAESSITIDDVVYVIDGGKHKEKSYDPEAKVQSLLPAWVSQASSKQRRGRAGRVQPGRCWHVYPRSKVSEMNEYQLPEIVRTSLESLCLQVRHLGLAAVGKGGVAGFINKALTPPGVVALDNALTLLTRIGAFRTNESLTPLGKHLALLPVEPQIGKALVLGCMLGCLDPVLTIAALLSQRNPFVMPMSKKEQADQAKRRFA 1569
            NI+CTQPRRISAI V+ R+AAERGE++G TVGYQIRLE + S  T+LLF TTG+LLR+L  DP L GV+H+++DE+HER ++ DFL+IILRDL+ +R+DL LVLMSAT+NAD+FS YF  AP ++IPG+TFPVEE++LED LE T   I     R Q   K+ PL      E++    H + +YS  T QS+  +  +++ L ++   + ++  +E +GAIL+FL+GW++I+ + D+++    L  +  +R+  LH  MPT  QR++F RPP  +RKIV+ATNIAESSITIDDVVYVID GK KE SYD   K+  LLP+W+S+AS+ QRRGRAGRVQPG C+ +YP+     M +YQLPEI+RT L+ LCLQ++ L L     G VA F+ KAL PP  +++ NA+ LL  IGA    E LTPLG+HL  LPV+P IGK L++G +  CLDP LTIA+ L+ R+PFV+P+++KE+AD AKR FA
Sbjct:  305 NIICTQPRRISAISVSGRIAAERGESIGETVGYQIRLEAKRSAQTRLLFCTTGVLLRQLVQDPNLTGVSHLLVDEIHERGMNEDFLLIILRDLLPRRRDLRLVLMSATINADMFSKYFGNAPTIHIPGFTFPVEEFFLEDVLEKTHYPIESEYERRQSEQKKDPLSA--LFEEVDINSHYK-KYSKSTRQSLEAWSTTKLDLGLVEAGIEYICRHEKDGAILVFLTGWDDITKLLDKIKENCLLGNSSKFRVLPLHGSMPTINQREIFERPPSNMRKIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGICYRLYPKLIYDAMPQYQLPEILRTPLQELCLQIKSLQL-----GTVASFLAKALQPPDPLSVQNAIELLKTIGALDDVEELTPLGRHLCTLPVDPNIGKMLLIGSIFQCLDPALTIASALAHRDPFVLPINRKEEADAAKRSFA 781          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7153.15331.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized0.000e+097.33protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCZ3... [more]
ATP-dependent5.780e-16953.94RNA helicase n=1 Tax=Hondaea fermentalgiana TaxID=... [more]
RNA1.320e-16251.92helicase n=2 Tax=Marchantia polymorpha TaxID=3197 ... [more]
DExH-box1.110e-16152.85ATP-dependent RNA helicase DExH1 isoform X1 n=4 Ta... [more]
Hypothetical5.400e-16151.49protein (Fragment) n=1 Tax=labyrinthulid quahog pa... [more]
RNA1.540e-16053.04helicase n=2 Tax=Handroanthus impetiginosus TaxID=... [more]
Hypothetical1.720e-16050.75protein n=1 Tax=Compsopogon caeruleus TaxID=31354 ... [more]
RNA2.570e-16051.15helicase n=1 Tax=Picocystis salinarum TaxID=88271 ... [more]
RNA6.190e-16050.58helicase n=4 Tax=Punica granatum TaxID=22663 RepID... [more]
RNA7.000e-16053.40helicase n=2 Tax=Thalictroideae TaxID=1463137 RepI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7153contigE_fasciculatus_S2_contig7153:685..7519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score984.9
Seed ortholog evalue1.4e-284
Seed eggNOG ortholog2880.D8LCZ3
Model size1584
Hectar predicted targeting categoryother localisation
Exons12
EggNOG free text desc.helicase activity
EggNOG OGsCOG1643@1,KOG0920@2759
Cds size1563
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7153.15331.1prot_E_fasciculatus_S2_contig7153.15331.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7153 685..7498 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842377.7296112-CDS-E_fasciculatus_S2_contig7153:684..8791696842377.7296112-CDS-E_fasciculatus_S2_contig7153:684..879Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7153 685..879 -
1696842377.7491775-CDS-E_fasciculatus_S2_contig7153:1223..13791696842377.7491775-CDS-E_fasciculatus_S2_contig7153:1223..1379Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7153 1224..1379 -
1696842377.7636285-CDS-E_fasciculatus_S2_contig7153:1877..20571696842377.7636285-CDS-E_fasciculatus_S2_contig7153:1877..2057Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7153 1878..2057 -
1696842377.7751045-CDS-E_fasciculatus_S2_contig7153:2834..29421696842377.7751045-CDS-E_fasciculatus_S2_contig7153:2834..2942Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7153 2835..2942 -
1696842377.7870545-CDS-E_fasciculatus_S2_contig7153:3110..32331696842377.7870545-CDS-E_fasciculatus_S2_contig7153:3110..3233Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7153 3111..3233 -
1696842377.7997036-CDS-E_fasciculatus_S2_contig7153:3899..40791696842377.7997036-CDS-E_fasciculatus_S2_contig7153:3899..4079Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7153 3900..4079 -
1696842377.8130999-CDS-E_fasciculatus_S2_contig7153:4398..44971696842377.8130999-CDS-E_fasciculatus_S2_contig7153:4398..4497Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7153 4399..4497 -
1696842377.8244846-CDS-E_fasciculatus_S2_contig7153:5223..53041696842377.8244846-CDS-E_fasciculatus_S2_contig7153:5223..5304Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7153 5224..5304 -
1696842377.835141-CDS-E_fasciculatus_S2_contig7153:5560..56711696842377.835141-CDS-E_fasciculatus_S2_contig7153:5560..5671Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7153 5561..5671 -
1696842377.8459475-CDS-E_fasciculatus_S2_contig7153:6606..67911696842377.8459475-CDS-E_fasciculatus_S2_contig7153:6606..6791Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7153 6607..6791 -
1696842377.8562043-CDS-E_fasciculatus_S2_contig7153:7217..73411696842377.8562043-CDS-E_fasciculatus_S2_contig7153:7217..7341Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7153 7218..7341 -
1696842377.867004-CDS-E_fasciculatus_S2_contig7153:7477..74981696842377.867004-CDS-E_fasciculatus_S2_contig7153:7477..7498Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7153 7478..7498 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842377.8775985-UTR-E_fasciculatus_S2_contig7153:7498..75191696842377.8775985-UTR-E_fasciculatus_S2_contig7153:7498..7519Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7153 7499..7519 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7153.15331.1

>prot_E_fasciculatus_S2_contig7153.15331.1 ID=prot_E_fasciculatus_S2_contig7153.15331.1|Name=mRNA_E_fasciculatus_S2_contig7153.15331.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=521bp
MLWWHRGVPQFLMDQYRYDDEVGDGGGDGGASKPYNIVCTQPRRISAIGV
AERVAAERGEAVGGTVGYQIRLERRASEHTKLLFVTTGILLRRLQADPQL
EGVTHVILDEVHERTVDSDFLIIILRDLVLQRKDLTLVLMSATLNADLFS
NYFSQAPKLNIPGYTFPVEEYYLEDALELTRTHITPTVNRQGRVKRKPLD
REQFGEKMSKLEHLRGRYSPRTLQSMAMFDESEVPLDVIVDLVRHVHAYE
GEGAILIFLSGWEEISAVHDRLEALQEARAWRLYALHSQMPTSQQRDVFL
RPPRGIRKIVIATNIAESSITIDDVVYVIDGGKHKEKSYDPEAKVQSLLP
AWVSQASSKQRRGRAGRVQPGRCWHVYPRSKVSEMNEYQLPEIVRTSLES
LCLQVRHLGLAAVGKGGVAGFINKALTPPGVVALDNALTLLTRIGAFRTN
ESLTPLGKHLALLPVEPQIGKALVLGCMLGCLDPVLTIAALLSQRNPFVM
PMSKKEQADQAKRRFAQVLI*
back to top

mRNA from alignment at E_fasciculatus_S2_contig7153:685..7519-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7153.15331.1 ID=mRNA_E_fasciculatus_S2_contig7153.15331.1|Name=mRNA_E_fasciculatus_S2_contig7153.15331.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=6835bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7153:685..7519- (Ectocarpus fasciculatus EfasUO2)
GCAGCGGTGACAGCCGGATCGATGCTATGGTGGCACCGGGGAGTACGCTT GCTTCCTCTAGGTGGTTCCTGGATAACAAATGTAGCACACGCAGGATCAC ATCAACTGGGGCGTTTTTACGACACCACCCGCACTTTGTTATCTTTCTTT GCCGGCGGCGTCCGTCGTGTCTTGCCAGGTCCCCCAGTTCTTGATGGACC AGTACAGATATGACGACGAAGTTGGCGACGGCGGCGGCGACGGCGGGGCG AGCAAGCCTTACAACATCGTCTGCACGCAGCCGAGGCGCATCTCCGCTAT CGGTAAGGAAGGGGCGACCTAAAATACACGTCGGCGTGCCCCCGAAACTG CTGTGGGCGCTTCTTGAATGTTCAACTTCCGCCCACAGCCCCAATTCCAC CGCATCTGCCTTTGCTTGCAAGTAGTCTTACTATGTAAGCTTTTCGATCA GTGCTACATAACGCTGCAGCGAGAGCATGCTCGAGCACATGATACCAGGT TTTCGGGGAATGGGAGGGATTCACGCTTTCCGCATGTTCGTGGGAGGCGT ATCTATCCCCGCAAGTCGGCGGAGGAGCACGCTTTGTGGTTTTTGGCAAT AGCATTGACCGCGCTAACCAACTGACCAATGAAAATACGCCAAGTCGTAG TGGCAGGATAACACGCGTGAACGAACACGCTTTCTTACCACATGTGTGTG TGTGTGTTTGTTGTGTTGCGTGCCGCAGGCGTGGCGGAGCGCGTGGCCGC GGAGCGCGGCGAGGCCGTCGGCGGGACTGTCGGGTACCAGATCCGCCTCG AGCGACGGGCCAGCGAGCACACCAAGCTGCTCTTCGTCACGACCGGGATC CTCCTCCGACGGCTGCAGGCCGACCCGCAGCTGGAGGGGGTGACGCACGT CATCCTGGATGAGGTACCGTGGGTTGCGCTGAGATACCACACCCCCCTGG ACCGATTTTTCAGAGCTTGATGTACTAGCTCCGCAGCAGCGAAAAAAAGT GCCGAAAAATTGGCCCCAGCGTTGGAAGTGTCTCGTCCAGAGCGTTCCGA TAATGCGTTGTTTGACGGTGGTTTCCCTTCGTCGTGGAGTAGTCGAGCTT TGAAATTTGTTGGTCCAGGGGGTGTGGTATCTGATGCAACCTACGGTACC ATTCATCTTGAGAAACAAAAGAGCCTCCTGAGCTTCATGTACTCCCTGGA GTTACCAGGGCAAAAAAACGCCTCTTGAAGGGCGTGTGCCCCCTGGAGTT CACACCAGGTTTTTTCCCCCACGTCGTTATGACGTCCAAATCTACCCTGC CATGGGTCATTCGGAGTGCCGAGCCGGCCGCGCGCGCGATGATGGTTGCT TGCGGACACGGGCGGCGTTTGTTGCATGTGGTCACGAGCACCCATGTGTA TTTATAGCTGCGAATCGTTTGATTGCGAGGACGACCGGACGTGTTTTGTT TTTGCCCATCAAGTATGGGCATCAGACGAGTTTATCTCCCCAAGGGGACA GTCTTGCGCGCGTCATGTCGGCGGGGGCTTGTTGGGCATGGTCCTCGACC GCTTCATTGAAAGCGTATGAAAATGTGTTTTAGTCGTCATTCCACTCAAC CGTTTATTTTGCGCCTCCATTTGTTCACCTTCCGTGCACGCACTGCTGTT TATTTTGGACCTCCACTAGTGCACCACGCAGCATGTCTGTCTGACAGCAC CGGCTAAGGTGACACAGCTAGGAGGAAGGAAGGCGATACAAAAAAATGAT TACTCCGTATGTTCTCCTTTTTGGATCAGTCAATACATAGCTGCTTGCTG AAATATCGCGCTTTGCGTTCGGGTTTGGTGTGCGCTCATGTGCAACAGGT GCACGAGCGGACGGTGGATTCTGATTTCCTCATCATCATTCTGAGAGACC TGGTCTTGCAGCGGAAAGACCTTACCCTCGTGCTCATGAGCGCCACCCTC AACGCGGATGTGAGTCTCGATCTTCTTTGCGTTTTCTCGGAACAAAAATG TGCCAGCGTTCCATGATGACCCTCTTGTGTCTGTTTTAAGCGCCAGATTG GTGCTCATGACCTGTGCTGTATGTGGAACAACCCCAAAGATGGACCATGT CTCAGCTCCTTTATCCTTGCCCGCTTCTCTCTCTCTCTCGCTCGCTCTCT CTGTCTGACCATTCGCCTCCGCTTGAAACTTGGTGGTACCTCTCTTCATG GCCGGTAACTCCCAGCTCTTCTCGAACTACTTCTCCCAAGCACCCAAGCT GAACATCCCAGGGTACACCTTCCCCGTGGAGGAGTACTACCTGGAGGTGA GTGAGACGAGGCCAATGGCGTCGTCCTCTCTCTCATTCAGTCAGAGTTTT TACAAGAAACTTCCTTTAAAGAGAACATGCGCCCCAAAGCATATTAAAAC ATTTTTTTGTGTGGTGACAAAAAGTAATTGGAAAGAGTCAAATATGTTAA TTTTCAATTATTTCGAATCCCCGGATACTGATATCAGCGGGGAATCTCGT GATGCTGTGTATGGCGGTCGCTATAGCTTTGATTTCGTCAACAAACCCGA GTTCTCGTGCCGATGGTGAGAGACTTGAGATGGACCTTCTGCAATATGTC GTGTCACGCGTACAGTATCACGAAGGCCACCAATCTTAATCTTCATATCG TGTGTGGAAAGTTGCGCGTATTGAAACCAATCAAAGTAGGTTCCCGCTTT TAAAAGCCTTGTGTATGTGGCACAAGTCTCTTCGCAGTGTGTGCTGGGCA CTCAACATATGTTGGATTTAATTGGCGCGTTTTTATTCGGCTTGTTGTTG TTCAACTGTCGCCGCCCTGTACACGACTTTTTTCTATTCTCCGAGAGGAG GTCCGCACCCCGCGTCCCCTTTCTCATTTGCAAGGCACGACCCGATCCTT ACTCTACTCTCTCAGAGTATAAGACAACTTGAGTATTCCATCTACGTTAC GCCACTCCACCGGCCTTGCACGAGACCCACCACCACTATCGGTACTCGTT TCACCGGCGTTTCGTCCGGCAGGACGCCCTGGAGCTCACGCGGACGCATA TCACGCCGACAGTGAACAGGCAGGGGAGGGTGAAGCGCAAGCCGCTGGAC CGGGAGCAGTTCGGAGAGAAGGTGCAGTGTGGTGTGCGGGACGGGATGGT GTGCGGGACGTTGGTGGAGAGTGGCGAACAAGCAAGACGCTGGGCCGTAG ACGGTTTGGACGGGTTAAGCGGGATGAGATGGGACGGGATGGGATACGAA ATGTGTTGTGTTTCGTAGTGTGTACGGAACGGTGAATCGGTAGGGTTTCG AGAAGGCTTGCTTGGCATGTTTCAGGAACGAGCCCAACACGATGAATGCT TTGCATAGCTGCCACGACGAGCGACAGCAGCGTGATATCAATGTCTCGTG CCCTCCGCACCCCTTGGTTGGTGATTTGCTATGATGACAGATGAGCAAGC TGGAACACTTGCGTGGGCGCTACTCGCCACGCACCCTCCAGTCGATGGCA ATGTTCGACGAGAGCGAGGTGCCCTTGGACGTTATCGTAGACTTGGTACG GCACGTCCATGCCTACGAGGGGGAAGGAGCCATCTTGATCTTCCTCTCCG GCTGGGAGGAAATCAGCGCGGTGAGATACAGCGTTTTTGTTAGGTCAAAA GTGATGTAGCTTCAAGGAGAGAGTACCCGTTGAAAAACCTCGCCAGATGG GATGTGTGTTGGTGTTTCTTTCCAGGGAGGATTGAAGGACAGGGCTCGGT GCTCGACTCACATGAGTCTGTTTCAGCCTTTTCACTGAGAAAGCATTCGG CATGCGGCGTAGAGATATATAGAGGTACCCGTCTTACAACACGTTTTTGT CTATTGGAAACAGATGGCGCGAAGAGGCGTGCATACTCGAGATACACTCC ACCATGTCCTTCTTGTCCGTTACCTGGCACTATGTACAATCTTTTTCCTC TCCCCCTTCCCCGCGGCACATGATCCGCTCGATGGACTCGTGTTCTTGCT GCCGCTGTGCTCACTTGGAAGACACCGACTGCATCGTCGCTACAAGCTAC AACCTTCTTCCCCCGTACATGCTTTTTGCGCCCGTTTGTGTGTGTATTTC CTAGTGCATCGACCGCGTCACATGTGACCCCGGCTGGGTCGTCGTCTAGC TAGTAGAAGTGGAGGATCGGGGCCAGAGGGGCAGACGACAGAGTCCAATC ATGGGAGAAAAAAAAATATATATATAGATGTATATATCCGGCTGACCAAT GAACGTGTGTGTTTTGTTATAATCCTCCGCATGTAGGTGCACGACAGGCT GGAGGCCCTACAGGAGGCTCGCGCGTGGCGCCTGTACGCGCTGCACAGCC AGATGCCCACCAGCCAGCAGAGGGACGTCTTCCTCCGGCCCCCAAGGGGC ATCCGCAAGGTCGGGATGGCAGCACATGTAGCATATTTTGGTAGCGCATG ATGCGATAGTGAGCGAAAACAGCAGCAATTGTGAGTGATGACGACCGACA CCGCCGGGACTTCCACCACTTACCGTGAACTTGACGCGTTTGGCATGTCC GTGTGTGTGTTTGTAACGTTCGGTCAGATCGTCATCGCGACCAACATTGC CGAGTCGTCCATCACCATCGACGACGTCGTCTATGTGATCGACGGCGGCA AGCACAAGGAGAAGAGCTACGACCCTGAGGCAAAGGTAAAGAAAACTCTC CATGCTTTCTTGTCACGGATATGGCAACTGCTTTTTTTTGTTGGGGATTA TTCATCGGTCTTCTTTGTTTTTCTTTCACGGATATAGTGTCGGCTGTCGT AGTTCTCGTTCAATTCCTGCTGTTGATCCGGTGTTTGTGTGTCTTCTGTG TCTTCGCTTCCTCTCTCGGACGTGGGTTTGTTTTGTTTGTTTTGGCGTCG TGTTTGTCCTGTGATTACGGGATCTCATTTGATCGTCTCGAAGAACACGA TAGAATGGTAGGCGAATGGAGAGCAGTATTGGGTACCAGGCGTTTGTGTA GTATTACCCCCCAGAGGTGTTACATCTCATTTCGCGTATCTGATGCTCGT CTTTCAGCAGCAGGTCGTTGCATTCTGCCTGACCGGTATTGTGTGTGTGC CACGTGCCATGTCTCGTGCCGTTGTAAGCAGCCTATCCTAAACCAACCAC CCCAAACCCCTAGCCTCCCCATCCCCTCGTCAACCCCTTCCACACCTCTC TGTAAGACCGACCGTGTCGAGATCAGTTGCAAAACCTGCTACAAAATAAT ACCGACGTTTCCTTGTTGCATAATACTCGCAGCTCCCCTGCACACTACCC ATCCCCACCCCCCACTGCCCACAAGTGCACCTTTTCCAGAAGTTGAACCG CGTCGAGATCAGGCGAAAAGCCCATTTTACCGGCGCGCCGTTGTCGCGTA GTATTCCTAATTCCCCCGCCCCCCACCCCCGATGGCACTGTTGACGGACG TCACCACACCAGGTGCAAAGCCTTCTCCCGGCTTGGGTATCCCAGGCCAG CTCCAAGCAGCGCCGCGGCCGCGCCGGCCGTGTCCAGCCTGGGCGGTGCT GGCACGTGTACCCCAGGAGCAAGGTGTCGGAGATGAACGAGTACCAGCTC CCGGAGATCGTGCGCACCAGCCTGGAGAGCCTGTGCCTCCAGGTAAACTG CTTTAAAATCCTCGCTATGTGTGCGTCTCTTTCCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTGTCTGTCTGTGTGTGTCTGTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTGTCTGTCTGTCTGTCTCTC TCTCTCTCTCTGTCTATGCCTCTCTCTCTCTCTGCCGCTGTTTTGTCTTC GTTTTGTCTCTGTGCTCGCCCTCAGCTGGTTTACTTCTTTGTCGTAGTCG CGTTGTTGCCTCGTTCGCGTTCGATCTCGTCCCGGCGTCTCCATGCAGAG TGACTCCAAACACCACGACTCCGCGGCCCAACTCAGTGCACCCTGCATGT GTCTCTCCGTGTCTTTGTTGGTAGCATCGACTACCCTAACCGGCCGACCG ATAATAGTACGTCAGTCTCAGTGCGATCGACGACAGGAAAGCCTCTAAAT GCCAGTCATGTTTTGTGTGTCCCTTCGTTGTTGGCGACAGGTGCGACATC TTGGTCTGGCGGCGGTAGGTAAGGGGGGCGTCGCGGGGTTCATCAACAAG GCCCTCACTCCGCCAGGGGTGGTCGCGCTGGACAACGCGCTCACGCTGCT CACGCGCATCGGTGCTTTCCGGACGAACGAAAGCCTTACGCCTCTTGTGA GTTATGACGGCGTTGCTCTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCT GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGGTGTTGG TGCTACTGCTGCTGTGATGGTGGTGATGACAATGATATAGTGCTGCCCTA GAGTATTCGTCGTCATGGGCCATGTCTTTTCAAACTCATTTTCCCGCTTT GCGCTGGATCAACACAAAAGAGAGAACTCACAGGCTGGACGCCCCTAGGA AACACACAAAAAAAACAGCACACCCATTTACGCGCTTGGCTCGATCACCT CCCCCACCCACGCGCGTACGCAATTTTTTTCTCGAAACAGGGAAAGCACC TCGCGCTCCTCCCGGTGGAGCCGCAGATCGGCAAGGCCCTGGTTCTGGGC TGCATGCTGGGTTGCCTTGACCCCGTGCTGACCATCGCGGCCCTGCTCAG TCAGCGCAACCCGTTCGTCATGCCCATGAGCAAGAAGGAACAGGCGGACC AAGCGAAGCGGCGGTTCGCTCAGGTGCTTATCTAA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7153:685..7519-

>mRNA_E_fasciculatus_S2_contig7153.15331.1 ID=mRNA_E_fasciculatus_S2_contig7153.15331.1|Name=mRNA_E_fasciculatus_S2_contig7153.15331.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1563bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7153:685..7519- (Ectocarpus fasciculatus EfasUO2)
ATGCTATGGTGGCACCGGGGAGTCCCCCAGTTCTTGATGGACCAGTACAG
ATATGACGACGAAGTTGGCGACGGCGGCGGCGACGGCGGGGCGAGCAAGC
CTTACAACATCGTCTGCACGCAGCCGAGGCGCATCTCCGCTATCGGCGTG
GCGGAGCGCGTGGCCGCGGAGCGCGGCGAGGCCGTCGGCGGGACTGTCGG
GTACCAGATCCGCCTCGAGCGACGGGCCAGCGAGCACACCAAGCTGCTCT
TCGTCACGACCGGGATCCTCCTCCGACGGCTGCAGGCCGACCCGCAGCTG
GAGGGGGTGACGCACGTCATCCTGGATGAGGTGCACGAGCGGACGGTGGA
TTCTGATTTCCTCATCATCATTCTGAGAGACCTGGTCTTGCAGCGGAAAG
ACCTTACCCTCGTGCTCATGAGCGCCACCCTCAACGCGGATCTCTTCTCG
AACTACTTCTCCCAAGCACCCAAGCTGAACATCCCAGGGTACACCTTCCC
CGTGGAGGAGTACTACCTGGAGGACGCCCTGGAGCTCACGCGGACGCATA
TCACGCCGACAGTGAACAGGCAGGGGAGGGTGAAGCGCAAGCCGCTGGAC
CGGGAGCAGTTCGGAGAGAAGATGAGCAAGCTGGAACACTTGCGTGGGCG
CTACTCGCCACGCACCCTCCAGTCGATGGCAATGTTCGACGAGAGCGAGG
TGCCCTTGGACGTTATCGTAGACTTGGTACGGCACGTCCATGCCTACGAG
GGGGAAGGAGCCATCTTGATCTTCCTCTCCGGCTGGGAGGAAATCAGCGC
GGTGCACGACAGGCTGGAGGCCCTACAGGAGGCTCGCGCGTGGCGCCTGT
ACGCGCTGCACAGCCAGATGCCCACCAGCCAGCAGAGGGACGTCTTCCTC
CGGCCCCCAAGGGGCATCCGCAAGATCGTCATCGCGACCAACATTGCCGA
GTCGTCCATCACCATCGACGACGTCGTCTATGTGATCGACGGCGGCAAGC
ACAAGGAGAAGAGCTACGACCCTGAGGCAAAGGTGCAAAGCCTTCTCCCG
GCTTGGGTATCCCAGGCCAGCTCCAAGCAGCGCCGCGGCCGCGCCGGCCG
TGTCCAGCCTGGGCGGTGCTGGCACGTGTACCCCAGGAGCAAGGTGTCGG
AGATGAACGAGTACCAGCTCCCGGAGATCGTGCGCACCAGCCTGGAGAGC
CTGTGCCTCCAGGTGCGACATCTTGGTCTGGCGGCGGTAGGTAAGGGGGG
CGTCGCGGGGTTCATCAACAAGGCCCTCACTCCGCCAGGGGTGGTCGCGC
TGGACAACGCGCTCACGCTGCTCACGCGCATCGGTGCTTTCCGGACGAAC
GAAAGCCTTACGCCTCTTGGAAAGCACCTCGCGCTCCTCCCGGTGGAGCC
GCAGATCGGCAAGGCCCTGGTTCTGGGCTGCATGCTGGGTTGCCTTGACC
CCGTGCTGACCATCGCGGCCCTGCTCAGTCAGCGCAACCCGTTCGTCATG
CCCATGAGCAAGAAGGAACAGGCGGACCAAGCGAAGCGGCGGTTCGCTCA
GGTGCTTATCTAA
back to top