mRNA_E_fasciculatus_S2_contig7151.15329.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7151.15329.1
Unique NamemRNA_E_fasciculatus_S2_contig7151.15329.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7151.15329.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK59_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 9.300e-24
Identity = 82/105 (78.10%), Postives = 84/105 (80.00%), Query Frame = 3 
Query:    3 ALVGSSRPLLELSSCTACAALEEERALLKSAEQKEVAGLSKVGQERRXXXXXXXXXXXXXXXAGSTPESSDSRPPG----------GIVVDAAITMESAHAGNGE 287
            ALVGSSRPLLEL+SCTACAALEEERALLKSAEQKEVAGLSKVGQER XXXXXXXXXXXXXXX GSTPE +D               GIVVDAAI  ES HAGNGE
Sbjct:  972 ALVGSSRPLLELTSCTACAALEEERALLKSAEQKEVAGLSKVGQERXXXXXXXXXXXXXXXXXGSTPERNDPXXXXXXXXXXXXXXGIVVDAAIATESTHAGNGE 1076
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BLAST of mRNA_E_fasciculatus_S2_contig7151.15329.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS72_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.840e-9
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 3 
Query:    3 ALVGSSRPLLELSSCTACAALEEERALLKSAEQKEVAG 116
            ALVGSSRPLLEL+SCTACAALEEERALLKSAEQKE  G
Sbjct:  934 ALVGSSRPLLELTSCTACAALEEERALLKSAEQKEGLG 971
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7151.15329.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized9.300e-2478.10protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Ubiquitin1.840e-992.11carboxyl-terminal hydrolase n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7151contigE_fasciculatus_S2_contig7151:842..3332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size355
Hectar predicted targeting categorymitochondrion
Exons2
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842377.6170936-CDS-E_fasciculatus_S2_contig7151:841..9481696842377.6170936-CDS-E_fasciculatus_S2_contig7151:841..948Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7151 842..948 +
1696842377.6270146-CDS-E_fasciculatus_S2_contig7151:3084..33311696842377.6270146-CDS-E_fasciculatus_S2_contig7151:3084..3331Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7151 3085..3331 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7151.15329.1prot_E_fasciculatus_S2_contig7151.15329.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7151 842..3331 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7151.15329.1

>prot_E_fasciculatus_S2_contig7151.15329.1 ID=prot_E_fasciculatus_S2_contig7151.15329.1|Name=mRNA_E_fasciculatus_S2_contig7151.15329.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=118bp
WPWWGRRGRCWSCRLAPRARRWRRRGPCSRAPSRKRLRVYRRWGRSAGRG
GRPPERPGNGGATPAQRRRAATPAPPAASLLMRQSRWRALMPATGRRGRG
ERRSNEVALRLRMPPPPP
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mRNA from alignment at E_fasciculatus_S2_contig7151:842..3332+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7151.15329.1 ID=mRNA_E_fasciculatus_S2_contig7151.15329.1|Name=mRNA_E_fasciculatus_S2_contig7151.15329.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2491bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7151:842..3332+ (Ectocarpus fasciculatus EfasUO2)
TGGCCCTGGTGGGGTCGTCGCGGCCGCTGCTGGAGCTGTCGTCTTGCACC
GCGTGCGCGGCGCTGGAGGAGGAGAGGGCCCTGCTCAAGAGCGCCGAGCA
GAAAGAGGTGTGTGTGTGTGTGTGTGTGCGTGTGCGTGTGTGTCTGTGTA
TGTGTGCATGTACAAGACCTCCCCCTGGAGTGGGCTAAGAGAGCACCGCG
GCAGGAGGTGAAAAAAGAACATGCGTATTAAAGCACATAAGAGTGAGATG
AAAACAGATGTTTTAGCATGATAAGAATTTTCGATAAAAGGGTTCGCGCC
ATTGTTGGGAGCTCGGCGCGAATTGTTTTCGTCGATAAAGACCCTTCTGT
AGTAATTTGTCTGCAAGAACAGCACGCGAACAATTTGTTTTTTTCGCCCC
AAATACATGCAGACCTCTTGAGGATATCCGACCCTCCCACCTAGAGCTCA
CCCATCTCTGCGCCTCTACACGTAAGACTCGCTAACACCCAGAGAGCTAA
CTACTACACCACACCAAAGTGTCCTGATGATCTTACGTAAAACCGGCCAG
CCGTGGTGTCATATCGCTGTTGCCTCATGCTTGGGTTGATAAAAGACGTT
GCTCTGGTCTATACTCTATTTTCTGGATTCTTGTTGGTTGAACGCCCGCA
TGCGGCACGCACGATGCGTATGTATGTATGTATGTATGTATGTAGGTATG
TATGTGTGGTATGTGTTCCACATGCACATGTATGTGCGTGCCTAAGTCCC
AACCTGAGGCTCGGCGGTCTGCACCGTGTGCATTGCTCTGCACCTCTACT
GGCACCACCACGACATGGCTCGACTGCTGGAAACTACTCATGTTTCTGCT
TACTGCTGCGGTAGTTAAGCAGTCGGATTCATGGGCAGCGAAAGAACGAC
TTGGGGGCGAGGGCGGCGTAAAGCGGTGTTTTTCTCCAAGCAAACGCGCA
TACACAACACCCTCGAAAGGGCAGCGAATAACTACGTGTATTTGTGTGTT
TCCAGCGTTACAAGAGCGTGAGGTTTGAGTGACTGTGTAGCAGCACCTGA
GTGTCTCAAAATCCGGTGGGAGTATGCACCTTATCAGGCATGTGGGCGCT
CGACTAAGAACTGCATTGGGGATGATGCGAGAGGCGACAGCAGTCCACAA
CGTCTCCCGCATGGTATGCGTAGAACTGAACAGAAAAAAAAAAACACGCA
ACTTACACCGTCAAGCAGTCGCCGGAAAAACGACTTGGAAAATAGAGTAT
GGTTGTCGCCCAGTAAACGCACACACGCTGGCCACGCTGGCAGAAGCGCT
GTATTCGCGCGTTTCCAGCTTGCAAAACAGCAAACAGCAAACAGCAGGAC
AGCAATGGTGCGTCAACCCCCGGAGAGAAGAGGCACGCAATGGTAAAGGA
CCACGAACAAAGTAGCAAAATTAATTGCGGAACGTGCAGAGTCGAAAAGC
CTCTTCTCGTGCCCCGCACGTACACGCTCGCTCCACAGCCGCTCTGACCG
CTGCCGCGCCAACGCTAAGCTGTTGGCATGTGCTGACATACTACTGCTGT
TCAAATTCAGAAACAGCTGTCAACGCTTACGTTTTGGCTGCTACAGCTGT
TCACACACACAACGCTGTGTGTGTACTTCCTTCTTGACATGGTGATTGAC
ACTGTCGTACGTACATGGTAATCTTTACAGCACAAATGAAAATTCTTGAT
TTTCCTGGGAAGGATTTACTGTACCTAGATGTACGTCGGCGGCTTTGCTT
TGTTTGTAGTGTGTTGTTCGCGTGAAAGTTGCTGGCGCTCCTCTGTTGTG
AGGGTTAGGCGCTCTCCGGGGGCTTGGTTGGTGCCTGCCGGCCGTGTATT
GCGCTTGGCGTCGTCATGTCATGAGGTCAAGGGGAGCCAACCACTTTCGA
TTCCTGCGAGCTGAGGAAGCGTTGCAAAAGAAGAGGCAGATGGGGGTACG
TGATCTGCGTTCATGAGCGAAGGGAGGACGTGCTCTAATTTTGTACTTGG
GGTTGTCTCTCTGGTTCTCGGTGATTGTCCCGTGTGTCGGAAACAGGACG
CCAGCGATGCTTGCGTCGCCCGCGCAAGGCACACCGCCTCCCCTACCCCT
CGCTTCCGCGCTCGTAAGCAACCCGGCTTACCTTCCTCTCTAATTTTACT
TGTACAGCCAGCGACATGTTGACACGCTTCCACACCGCCTTCCTGCTCAT
ACCTGCCTCCTGCCGTGGCGTCATTGTTTTTTTTTGGGCTCAGGTTGCGG
GTTTATCGAAGGTGGGGCAGGAGCGCCGGAAGAGGAGGAAGGCCGCCCGA
GAGGCCCGGCAACGGAGGCGCAACGCCGGCTCAACGCCGGAGAGCAGCGA
CTCCCGCCCCCCCGGCGGCATCGTTGTTGATGCGGCAATCACGATGGAGA
GCGCTCATGCCGGCAACGGGGAGAAGGGGGAGGGGGGAGAGGCGCTCGAA
CGAGGTGGCTCTGCGACTGCGGATGCCACCGCCGCCGCCGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7151:842..3332+

>mRNA_E_fasciculatus_S2_contig7151.15329.1 ID=mRNA_E_fasciculatus_S2_contig7151.15329.1|Name=mRNA_E_fasciculatus_S2_contig7151.15329.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=354bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7151:842..3332+ (Ectocarpus fasciculatus EfasUO2)
TGGCCCTGGTGGGGTCGTCGCGGCCGCTGCTGGAGCTGTCGTCTTGCACC
GCGTGCGCGGCGCTGGAGGAGGAGAGGGCCCTGCTCAAGAGCGCCGAGCA
GAAAGAGGTTGCGGGTTTATCGAAGGTGGGGCAGGAGCGCCGGAAGAGGA
GGAAGGCCGCCCGAGAGGCCCGGCAACGGAGGCGCAACGCCGGCTCAACG
CCGGAGAGCAGCGACTCCCGCCCCCCCGGCGGCATCGTTGTTGATGCGGC
AATCACGATGGAGAGCGCTCATGCCGGCAACGGGGAGAAGGGGGAGGGGG
GAGAGGCGCTCGAACGAGGTGGCTCTGCGACTGCGGATGCCACCGCCGCC
GCCG
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