mRNA_E_fasciculatus_S2_contig715.15324.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig715.15324.1
Unique NamemRNA_E_fasciculatus_S2_contig715.15324.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig715.15324.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G920_ECTSI)

HSP 1 Score: 410 bits (1053), Expect = 3.660e-143
Identity = 225/248 (90.73%), Postives = 228/248 (91.94%), Query Frame = 1 
Query:    1 VRDPPTAHTQPTHTTSRLAVTLHFSPSNIVLITRF-MSTPVPATGGAVGSKARRPLATTPGDKIVEGERLRDEAQSLLKGDEPKKAAVKFRTVFAYTKGLIPQTSELALYAAATGQQTVIDQKQQVAVRALELSCNEGLATIYFRSGHHEKALGYSEKVLLAEPESAKALFRAGQLNLRLKNIEAAKRCLTRAAKHEPQNVNIRTELRNLTKLAQGEGVEAGTDSATPEEGKESAGDKRKCPKQSEEA 741
            VR   +AHTQ T T  RL VTL FSPSNIVL TRF MSTPVPATGGA  S ARRPL TTPGDKIVEGERLRDEAQSLLK D+PK AAVKFRTVFAYTKGLIPQTSELALYAA TGQQTVIDQKQQVAVRALELSCNEGLATIYFRSGHHEKALGYSEKVLLAEPESAKALFRAGQLNLRLKNIEAAKRCLTRAAKHEPQNVNIRTELRNLTKLAQGEGVEAGT+SAT EEGKESAGDKRKCPK SEEA
Sbjct:   11 VRSKGSAHTQHTDTHLRLTVTLRFSPSNIVLATRFEMSTPVPATGGAAASNARRPLPTTPGDKIVEGERLRDEAQSLLKSDKPKTAAVKFRTVFAYTKGLIPQTSELALYAAVTGQQTVIDQKQQVAVRALELSCNEGLATIYFRSGHHEKALGYSEKVLLAEPESAKALFRAGQLNLRLKNIEAAKRCLTRAAKHEPQNVNIRTELRNLTKLAQGEGVEAGTESATTEEGKESAGDKRKCPKSSEEA 258
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig715.15324.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized3.660e-14390.73protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig715contigE_fasciculatus_S2_contig715:1568..4508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score86.7
Seed ortholog evalue1.7e-14
Seed eggNOG ortholog115417.EPrPW00000026133
Preferred nameFKBP5
Model size744
KEGG koko:K01802,ko:K06269,ko:K09571,ko:K12487
KEGG Pathwayko03015,ko04022,ko04024,ko04113,ko04114,ko04144,ko04218,ko04261,ko04270,ko04390,ko04510,ko04611,ko04720,ko04728,ko04750,ko04810,ko04910,ko04915,ko04921,ko04931,ko05031,ko05034,ko05168,ko05205,map03015,map04022,map04024,map04113,map04114,map04144,map04218,map04261,map04270,map04390,map04510,map04611,map04720,map04728,map04750,map04810,map04910,map04915,map04921,map04931,map05031,map05034,map05168,map05205
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000041,GO:0000166,GO:0000413,GO:0001655,GO:0001882,GO:0001883,GO:0003006,GO:0003008,GO:0003674,GO:0003755,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005524,GO:0005525,GO:0005527,GO:0005528,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005886,GO:0006457,GO:0006463,GO:0006464,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006825,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007422,GO:0007548,GO:0007565,GO:0007566,GO:0007600,GO:0007601,GO:0008092,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009584,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009719,GO:0009725,GO:0009755,GO:0009987,GO:0010033,GO:0010639,GO:0010721,GO:0010959,GO:0010975,GO:0010977,GO:0014070,GO:0016020,GO:0016027,GO:0016028,GO:0016043,GO:0016853,GO:0016859,GO:0017076,GO:0018193,GO:0018208,GO:0019001,GO:0019538,GO:0019897,GO:0019898,GO:0022008,GO:0022414,GO:0022607,GO:0023052,GO:0030001,GO:0030154,GO:0030424,GO:0030426,GO:0030427,GO:0030518,GO:0030521,GO:0030522,GO:0030554,GO:0030674,GO:0030850,GO:0031072,GO:0031110,GO:0031111,GO:0031113,GO:0031115,GO:0031333,GO:0031344,GO:0031345,GO:0031503,GO:0031974,GO:0031981,GO:0032271,GO:0032272,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0032767,GO:0032870,GO:0032879,GO:0032886,GO:0032991,GO:0033043,GO:0033267,GO:0033993,GO:0034622,GO:0035257,GO:0035258,GO:0035259,GO:0035639,GO:0036094,GO:0036211,GO:0036477,GO:0042221,GO:0042995,GO:0043005,GO:0043025,GO:0043167,GO:0043168,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043269,GO:0043401,GO:0043412,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044295,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044706,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046661,GO:0048156,GO:0048471,GO:0048513,GO:0048519,GO:0048523,GO:0048545,GO:0048583,GO:0048608,GO:0048699,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050896,GO:0050906,GO:0050908,GO:0050953,GO:0050962,GO:0051049,GO:0051093,GO:0051128,GO:0051129,GO:0051179,GO:0051219,GO:0051234,GO:0051239,GO:0051241,GO:0051427,GO:0051493,GO:0051494,GO:0051606,GO:0051704,GO:0051707,GO:0051716,GO:0051879,GO:0051924,GO:0051960,GO:0051961,GO:0060090,GO:0060284,GO:0061077,GO:0061458,GO:0065003,GO:0065007,GO:0070013,GO:0070507,GO:0070887,GO:0071310,GO:0071383,GO:0071396,GO:0071407,GO:0071495,GO:0071704,GO:0071840,GO:0071944,GO:0080134,GO:0080135,GO:0097159,GO:0097367,GO:0097458,GO:0098796,GO:0098797,GO:0120025,GO:0120035,GO:0120038,GO:0140096,GO:0150034,GO:1900034,GO:1901265,GO:1901363,GO:1901564,GO:1902903,GO:1902904,GO:2000026
Exons5
EggNOG free text desc.Source PGD
EggNOG OGs1MDTX@121069,COG0545@1,KOG0543@2759
Ec32 ortholog descriptionFKBP and TPR domain protein
Ec32 orthologEc-15_002210.1
EC3.1.3.16,5.2.1.8
Cds size744
COG Functional cat.O
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03019,ko03021,ko03041,ko03110,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842376.950535-CDS-E_fasciculatus_S2_contig715:1567..16721696842376.950535-CDS-E_fasciculatus_S2_contig715:1567..1672Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig715 1568..1672 +
1696842376.9640288-CDS-E_fasciculatus_S2_contig715:2586..28541696842376.9640288-CDS-E_fasciculatus_S2_contig715:2586..2854Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig715 2587..2854 +
1696842376.9749122-CDS-E_fasciculatus_S2_contig715:3084..31821696842376.9749122-CDS-E_fasciculatus_S2_contig715:3084..3182Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig715 3085..3182 +
1696842376.9871442-CDS-E_fasciculatus_S2_contig715:3594..36811696842376.9871442-CDS-E_fasciculatus_S2_contig715:3594..3681Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig715 3595..3681 +
1696842377.0046492-CDS-E_fasciculatus_S2_contig715:4322..45081696842377.0046492-CDS-E_fasciculatus_S2_contig715:4322..4508Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig715 4323..4508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig715.15324.1prot_E_fasciculatus_S2_contig715.15324.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig715 1568..4508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig715.15324.1

>prot_E_fasciculatus_S2_contig715.15324.1 ID=prot_E_fasciculatus_S2_contig715.15324.1|Name=mRNA_E_fasciculatus_S2_contig715.15324.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=248bp
VRDPPTAHTQPTHTTSRLAVTLHFSPSNIVLITRFMSTPVPATGGAVGSK
ARRPLATTPGDKIVEGERLRDEAQSLLKGDEPKKAAVKFRTVFAYTKGLI
PQTSELALYAAATGQQTVIDQKQQVAVRALELSCNEGLATIYFRSGHHEK
ALGYSEKVLLAEPESAKALFRAGQLNLRLKNIEAAKRCLTRAAKHEPQNV
NIRTELRNLTKLAQGEGVEAGTDSATPEEGKESAGDKRKCPKQSEEA*
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mRNA from alignment at E_fasciculatus_S2_contig715:1568..4508+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig715.15324.1 ID=mRNA_E_fasciculatus_S2_contig715.15324.1|Name=mRNA_E_fasciculatus_S2_contig715.15324.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2941bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig715:1568..4508+ (Ectocarpus fasciculatus EfasUO2)
GTAAGGGATCCGCCCACCGCCCACACACAACCAACACACACAACCTCCCG
CCTCGCCGTTACACTCCACTTCTCTCCTTCCAACATCGTGCTGATCACCA
GGTTTGTAGGTGCGTTGCGTCTTATAATGTCTGGTCGCCGAACTTGAGTG
CGTTACTGCTTTGTGTGCTACGCGCCAACTCAGCCCGGCGAGGGTCAACC
TGTTGTGTGCACACGAGCTACGCTGTACGAGCAAGCGTCGTCATTTGTAC
ACGATGTGGGACATATGCATGCGAACGGGGAAGAGCACCCTGCGTACTTC
CTCGAGACCGGGGTTATTGTCCAGTAGCTTGGTGCATACGTGATCCGGCT
CATCTGCCGTCCTCACGATAACAACATGCCTCCTCACATTTGGATCAAGT
TTTTGAACTGACTTCCATGGACTGTCGACCCAGAGGTAGTTTTTTTTGGA
TACCTTGCACGACAGGTGAGACTACTGCTGTAGGCTTTGGTGCTTTGTTG
ATGGTGGGTGCATGCCGTTGTGTTTGGGCCTCAAGCAACTTGATTTCTTC
CAGAAACAAAGAGAAAAGACAAACAAACTGGGTAATGGACTATGTACATG
TTATGTTCCACATAACAGCATCGCCTATTAATTCCGCCGCTCTTTTGGCC
AAGCCACGAGACATGGCGGTCGCAACCCGCATTTGGTTCCCTCTATCATC
ATGCAGGGAACTGTCTCTCGAGTTGGGTTGTGATCCTATTCGTTGTTGGC
AGAATACAGAAGTTTTTCAACCTGGCTGCATTGGTACATCGGGCCTTGGA
CTTGACGCAAGACCTACATAGTCTACAGCAGCCTACGTTTGGTTGCTTGG
TGTCTGGGTCGGGTTTTTGAAAAATATACATGAACACGCAGCGACTATCC
GTTCGAGGTATAATCACAGCAGTCGAGAGTTTTTTGATGTTGCAAACGTT
GCCGATCACGTTATTACCGAGTACAACCCTTTCTTGGTCCTCCACTGGTG
TGACAGATCGATACAATAGATGTCGACCCCAGTTCCAGCGACAGGGGGCG
CGGTGGGCTCAAAGGCGCGCAGACCCTTGGCAACAACCCCAGGAGACAAG
ATCGTCGAAGGTGAGCGACTGCGAGACGAGGCGCAGTCGCTCCTCAAAGG
TGATGAACCCAAGAAGGCGGCGGTCAAGTTCAGGACTGTATTCGCCTACA
CTAAAGGGCTGATCCCGCAGACCTCCGAGTTGGCCCTGTATGCGGCCGCG
ACGGGGCAGCAGACGGTCATCGACCAAAAACAGCAAGGTGAGCTTCACTT
GTGGCCCCAGCTACCGAGGGCCCTATGATATGTACATGCGACCACTTTGC
ATCTCCGCTCAGGGATCTACCTCCCAATATCGGTCAGTTGTGGCTCCAGC
TACCGAGGACCCTATGGTATGTACACGCGGCCCCCCGTTGAATCTAAATC
TCTGGGCAGGGATCTCCCGATATCCTGTCACTGTTTGATTGTTGTATATT
TCTGGTCTCCTTCGCAGTCGCTGTTCGAGCTTTGGAGCTATCTTGCAACG
AAGGGCTGGCGACCATATACTTCCGGAGCGGACATCACGAGAAAGCTCTA
GGGTACAGCGAGAAGGTGTGGGGGGACATTTGCGTGAAATTCGCGACACC
ATTCTTTCAGACGGCATCCGATCTGGAGTCGAACGGGCCTTCATCAACGG
CGTTAATTTTAGGGGACTGATGCTTACAACGTGGGTGTTTCGACCGCTGA
CATCTTCGTAGTGGCCCCGTCCCACACACTCTGTACAAAGCTTTGGAGGA
GTCTTCTGTGTGCTGAAAGTTTGAAGAAGAGCTTACGCAAGTTGGCTGTG
AGACGGTGACTTGCTCTTCTGAGTACGACGTACAAGACACTGCTATCAAG
TATGCATCAAGTATGTGTTCGAGTTCGGTGCGTTGGTTGTAACATCTTTC
ATTAGCGACGGGTGGAATATGATTGAGACATTCTAGCCACAAACTCATCC
GTATTGCGAAACGATCTGCTTCTTTAGGTGCTGCTGGCGGAGCCGGAGTC
AGCGAAAGCACTCTTCCGAGCCGGCCAACTAAACTTGCGACTCAAGAACA
TCGAAGCGGCCAAGGTATGTGGAGTGTCTCGGACCGAACCCACAAGATGT
ACGTCTGTGGTGTCTTTTGAGCATCCCGCGTCAATATTTTGGCATGGTAT
GCGTTCGTTGTGGACTGGCTCTATTGTATGGGCTGTCAGACGACGCCAGT
AGCTTTTTCGCCCACAAGGTACACTGCTGTAGGGTGCCTTAACATAGCAT
GGTTTCGCACCGGGGTCAAGACTGTGTTGTGTAGTCTCGCGCAGTCGGTC
GACGGTGCAACGTGCAGTATGACTTCGAGCTGGTGTTTCCCGTTTCCCGT
TGTGGTGGCCCACATCTTGCGCATCGTCGATTCTATGTGTACGTACGTTG
ACGTCGGAGCTCTTCGCGGTAATATAAAAGATATTTCAGCGCCACATGGC
ACCGGCCCGGACTGCACACGCGACTGTGTGCCGCTCATGTGGTTCCAGCC
ATGGAAAAATATTGATGGTCGGTTCAGGAACGTTGCAAGACGTTCACCAC
CCTACGCTTCCATGATGCAAGTAGTTGCGGTCAGCATCTCGTCATCTCAA
CCCGTTCACCAGGCTGAAGCTGGGCGTAAGATTCGACTGGTGGTGTGTTC
CTTTGTGCCCGTCCTCCCTCTGTGACCCTTCCCTTGCATTATGCGTCCAC
GACAGCGGTGCTTAACGCGCGCAGCGAAGCACGAGCCTCAGAACGTGAAC
ATCCGTACAGAGCTTCGGAATCTGACTAAATTGGCGCAGGGGGAGGGCGT
GGAGGCAGGCACCGATTCGGCCACCCCAGAGGAAGGCAAAGAGTCGGCGG
GGGACAAGAGAAAATGCCCTAAACAAAGCGAGGAGGCATGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig715:1568..4508+

>mRNA_E_fasciculatus_S2_contig715.15324.1 ID=mRNA_E_fasciculatus_S2_contig715.15324.1|Name=mRNA_E_fasciculatus_S2_contig715.15324.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=744bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig715:1568..4508+ (Ectocarpus fasciculatus EfasUO2)
GTAAGGGATCCGCCCACCGCCCACACACAACCAACACACACAACCTCCCG
CCTCGCCGTTACACTCCACTTCTCTCCTTCCAACATCGTGCTGATCACCA
GGTTTATGTCGACCCCAGTTCCAGCGACAGGGGGCGCGGTGGGCTCAAAG
GCGCGCAGACCCTTGGCAACAACCCCAGGAGACAAGATCGTCGAAGGTGA
GCGACTGCGAGACGAGGCGCAGTCGCTCCTCAAAGGTGATGAACCCAAGA
AGGCGGCGGTCAAGTTCAGGACTGTATTCGCCTACACTAAAGGGCTGATC
CCGCAGACCTCCGAGTTGGCCCTGTATGCGGCCGCGACGGGGCAGCAGAC
GGTCATCGACCAAAAACAGCAAGTCGCTGTTCGAGCTTTGGAGCTATCTT
GCAACGAAGGGCTGGCGACCATATACTTCCGGAGCGGACATCACGAGAAA
GCTCTAGGGTACAGCGAGAAGGTGCTGCTGGCGGAGCCGGAGTCAGCGAA
AGCACTCTTCCGAGCCGGCCAACTAAACTTGCGACTCAAGAACATCGAAG
CGGCCAAGCGGTGCTTAACGCGCGCAGCGAAGCACGAGCCTCAGAACGTG
AACATCCGTACAGAGCTTCGGAATCTGACTAAATTGGCGCAGGGGGAGGG
CGTGGAGGCAGGCACCGATTCGGCCACCCCAGAGGAAGGCAAAGAGTCGG
CGGGGGACAAGAGAAAATGCCCTAAACAAAGCGAGGAGGCATGA
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