mRNA_E_fasciculatus_S2_contig713.15307.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig713.15307.1
Unique NamemRNA_E_fasciculatus_S2_contig713.15307.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig713.15307.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKS0_ECTSI)

HSP 1 Score: 407 bits (1047), Expect = 3.840e-141
Identity = 210/233 (90.13%), Postives = 218/233 (93.56%), Query Frame = 3 
Query:  138 VASSAPH---QVVSASISQYDIENGRSSCTCICLEASLTVLERLGDGTAWAGSPDDVASCVNTGVAMYEAVAATGTLAVEHTSVAEILAAVARYRDALQPATEKVSHQGLLGSDTSIARVLGEIQGERRDQSRPVAVAITKPPETVVCFLPAESQGGGGVATTGAPSTRQWLLFDSHPRPQLGLVGASVRSFGAQEALVEALNDIFPAVDLGTDSVMSSMYNMFDCVPLSLKR 827
            V S  PH   QVVSASISQYD++NGRSSCTCICLEASLTVLERLGDGTAWAGSPDDVA+CVNTGVAMYEAVAATGTLAVEHTSVAEILA VARY DALQPAT+KV+HQGLLGSDTSIARVLGEI+GERRDQSRPVAV ITKPPETVVCFLPAESQ  GG ATTGAPSTRQWLLFDSHPRPQ GLVGASVR F A+EALVEALNDIFPAVDLGTDSVMSSMYNMFDCVPLSLK+
Sbjct:    4 VHSVTPHTLIQVVSASISQYDVQNGRSSCTCICLEASLTVLERLGDGTAWAGSPDDVANCVNTGVAMYEAVAATGTLAVEHTSVAEILATVARYHDALQPATDKVTHQGLLGSDTSIARVLGEIRGERRDQSRPVAVVITKPPETVVCFLPAESQAEGGAATTGAPSTRQWLLFDSHPRPQHGLVGASVRCFAAEEALVEALNDIFPAVDLGTDSVMSSMYNMFDCVPLSLKK 236
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BLAST of mRNA_E_fasciculatus_S2_contig713.15307.1 vs.
Match: Predicted (protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G7Q3_PHATC)

HSP 1 Score: 76.3 bits (186), Expect = 2.990e-12
Identity = 77/238 (32.35%), Postives = 109/238 (45.80%), Query Frame = 3 
Query:  144 SSAPHQVVSASISQYDIENGRSSCTCICLEASLTVLERLGDGTAWAGSPDDVASCVNTGVAMYEAVAATGTLAVEHTSVAEILAAVARYRDALQ-PATEKVS--HQGLLGSDTS----IARVLGEIQGERRDQSRPVAVAITKPPETVVCFLPAESQGGGGVATTGAPSTRQWLLFDSHPRPQL-GLVGASVRSFGAQEALVEALNDIFPAVDLGTD--SVMSSMYNMFDCVPLSLKR 827
            SSA  + +   +SQY +E G+SSCTCI +  +L  L      +    SP+ +   +  G   Y  +A   T  VEH S  E L       D+ +    E +    QG++  D       A  L E + ER        V ITK PE+VV  LP  S+              +++L DSHPR  L G  G+  R   +  ALV++L  IFP  DLG+D   +M++MYN FD      K+
Sbjct:   59 SSAEVRNIHCPLSQYSLEAGQSSCTCIAMTNALHFLRSSNHISDL--SPEFLQCALLAGNQTYLKIARNRT--VEHMSAEEAL-------DSGEFQCLELIGSVRQGIISRDDQHPLGFAVQLQECKSERFW----TCVLITKTPESVVICLPPSSE-------------TEYVLIDSHPRSHLFGTEGSYARIHFSLSALVDSLKQIFPMTDLGSDVPELMAAMYNSFDLYAFQYKQ 268
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig713.15307.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.840e-14190.13protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Predicted2.990e-1232.35protein n=2 Tax=Phaeodactylum tricornutum TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig713contigE_fasciculatus_S2_contig713:351..3652 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score409.5
Seed ortholog evalue1.2e-111
Seed eggNOG ortholog2880.D7FKS0
Model size1002
Hectar predicted targeting categoryother localisation
Exons5
EggNOG OGs2E3UP@1,2SAUQ@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-21_001890.1
Cds size795
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig713.15307.1prot_E_fasciculatus_S2_contig713.15307.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig713 386..3480 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842375.0501804-UTR-E_fasciculatus_S2_contig713:350..3851696842375.0501804-UTR-E_fasciculatus_S2_contig713:350..385Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig713 351..385 +
1696842375.1161833-UTR-E_fasciculatus_S2_contig713:3480..36521696842375.1161833-UTR-E_fasciculatus_S2_contig713:3480..3652Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig713 3481..3652 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842375.0625274-CDS-E_fasciculatus_S2_contig713:385..5111696842375.0625274-CDS-E_fasciculatus_S2_contig713:385..511Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig713 386..511 +
1696842375.0730133-CDS-E_fasciculatus_S2_contig713:2165..23061696842375.0730133-CDS-E_fasciculatus_S2_contig713:2165..2306Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig713 2166..2306 +
1696842375.083169-CDS-E_fasciculatus_S2_contig713:2490..25941696842375.083169-CDS-E_fasciculatus_S2_contig713:2490..2594Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig713 2491..2594 +
1696842375.0937154-CDS-E_fasciculatus_S2_contig713:2782..29391696842375.0937154-CDS-E_fasciculatus_S2_contig713:2782..2939Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig713 2783..2939 +
1696842375.1049678-CDS-E_fasciculatus_S2_contig713:3213..34801696842375.1049678-CDS-E_fasciculatus_S2_contig713:3213..3480Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig713 3214..3480 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig713.15307.1

>prot_E_fasciculatus_S2_contig713.15307.1 ID=prot_E_fasciculatus_S2_contig713.15307.1|Name=mRNA_E_fasciculatus_S2_contig713.15307.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=265bp
MASLEQLVTMGFSEDEARTAVEAHGVGALDVLLGVASSAPHQVVSASISQ
YDIENGRSSCTCICLEASLTVLERLGDGTAWAGSPDDVASCVNTGVAMYE
AVAATGTLAVEHTSVAEILAAVARYRDALQPATEKVSHQGLLGSDTSIAR
VLGEIQGERRDQSRPVAVAITKPPETVVCFLPAESQGGGGVATTGAPSTR
QWLLFDSHPRPQLGLVGASVRSFGAQEALVEALNDIFPAVDLGTDSVMSS
MYNMFDCVPLSLKR*
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mRNA from alignment at E_fasciculatus_S2_contig713:351..3652+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig713.15307.1 ID=mRNA_E_fasciculatus_S2_contig713.15307.1|Name=mRNA_E_fasciculatus_S2_contig713.15307.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3302bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig713:351..3652+ (Ectocarpus fasciculatus EfasUO2)
CCTCAAGCCAGAAAAGAGCAGGAGGATTCATTGGGATGGCTTCGTTGGAA
CAGCTCGTCACCATGGGTTTCTCTGAGGACGAGGCAAGGACTGCTGTTGA
GGCGCATGGAGTTGGTGCGTTGGACGTACTGCTTGGGGTTGCATCTTCAG
CCCCACACCAGGCAAGCTCCACAGACATTGCATCCTAAATAGACTGCTAC
GGATACTACAGGACCCTGCAGTACTACATGTAGCATGTAGCATTGATTGT
AGTGGAGAGTACTTATGTCACACATTTGTACGTTCGCGACGAATATCGGT
CCCGCCGGTTGATGTCGTAACTTCGGATGTCGAGACATGATGTTGAATCT
TGGCGTAGCCCCATAAAAAATGGTAATCAACGAATCAACAAACAACAAAC
ACCGTGTCGATGCGGAGCAAACTGCTGTCTAGTCGGCGGCCGCAGAAGCA
CTCTCAAAGCTCCAAAAGTAGATGTACAGGTGGGACTCTCTTTGTAGCAG
CTTGGCACAATCCTCCCGAACAGTAGACTGGCGTCCAGAAAAGGCGGGAC
GAAACACGCAAATCAATTGCAATGAATTTGTTCGTGGTATTATCATAGGA
AGAATGGCATCAAGTGATGCTTAGACAGACGCTTGACTAATTTCACCGGG
TTGGAGGAAGGAAGGAGGGTGCCCACAACCTACTACTGTAGCTAGCTGAC
GTGGGGAACTCCGTGCATCATCCTCTGGGGAAACAACCCCATGGATCCCT
AATAAGCCGAGCACCTGAAACAACAGATTTCTCGCCGACAAGAATGGACT
ACACGTTATTACATGTAGTCACACGAACACATTCTTGACTTGATTGTTGA
CGAGGGTGGGGAGTGCTGTACCCTTCTCGCGATAAAAATATCTCAGGCAG
GAACCGCAGGAGAGGGTCCACCCCCCCCCTCCTATGTGACCCCGGTTGGA
TCGTCTAGCTAGTAGAGTGGAGGAAGGGGGCCAGAGGGGCAGACGACAGA
GTCCAATGATGGGAGGAAAAAAAAAAAATTGATTGCTGGTGGGTACGATG
CCATTCGATTTCACCGTCAACGAGGGAAAAGGCGGGGGAGGTACACGTAA
GGAGAAGTCCTGTCTCATCCTCCGGTGTGACCCCAGCTGGTGCGTCCGAA
AAACATACCACAACGTGTAAGCTTCAATTGATGGGATGGTAACGCGTGCG
TTTAGTGCTGTTCTGTGATGAACGCATGACCCACATGCGGCTGAGTGAGC
TTTCGAAAATTGTGGGCGGGGAGGGTCGGGGTACGCAGAGCAGAGCATCG
CACGAGCGTGTCGACTTACCCTGATTTCCCCAACGCCAGATAATCGTCAG
ACATAAGGACGACAGGAAATTCCCTCCGCAAACGGGAGCTAGTCTGGGAG
TGCAATCTGCGAGCTCGCACAAATATCGCGACCATTTTTGCGAAGTTGGC
GCAATTGGGCATCTTCTGAAGACTCGCAAGGGCGGCACTCCCCCCGCTTA
CCCCTGACTCGGCATAGCCGTGCGTGTTGTGGAGTCACCGGCATAAACCA
CCAGGGGGCTGCCAGCCCTCAGGAACGGCAACTGAATCAGTTTTTTCAGC
GCTGACACCGATTGCACACCGTAATCAAGGGCGGCATTTTTCATCATGCG
TGGATTTGGTGGGAAAACTGCGCCACATTAGGCTAAATAGGTGTTGCACA
CTCACGGCTCCATTCAGAAAATTCTCAAATTGTGCGCCCCAGCGATATGC
CTGTTTCAAGAAAGCTTCATGAATGATGTTCATTCAATAACGTTCTGGCA
CGTACGTTGATCCAGGTCGTCTCTGCTTCCATCAGCCAGTACGACATCGA
GAATGGGAGATCTTCGTGCACGTGCATCTGCTTGGAAGCTTCGTTGACGG
TTTTGGAGCGTTTGGGTGATGGCACCGCGTGGGCTGGCTCGCCAGACGAT
GTAGCGGTGAGTCTCCCGTGTTCTCAAATGTTCACCGAAGCTGCATCTTG
TTGTGGTGGGCGATCGAGTGGTTCGGTTGTCGGGTTATTTCTGGTATAGT
TTTTTGTACGCTGGTTTGGTAGGATTGCGTCAGCATCGGCGCTACACATG
GCCGATCATCGCTCCGTATCATCTGTTTGGCCTCGCTCAGAGCTGCGTCA
ACACTGGGGTGGCCATGTACGAAGCAGTGGCAGCCACTGGCACGCTTGCG
GTGGAGCACACTTCTGTCGCTGAAATTCTCGCAGCTGTTGCCAGGTGACA
TGATGGTCTGATTCTTGGAATTGTTGAAGGTGTTCAACAAAATCGTGAGC
AGGTCGAAGGTTCGCGAAATGATACCTGCTGTGTGGCTACGACTGGCACT
GCGTTGGTGCGTGCTCGAGGCTGATACATGATCTCTGTTGACTTGCTGAC
GACAGCTAGTCGCTGATTTCTGTGTGATGCAGGTATCGCGATGCGCTGCA
GCCCGCGACCGAAAAAGTGTCGCATCAGGGCTTGCTTGGCTCGGACACGT
CAATAGCCAGAGTTCTTGGAGAGATTCAGGGTGAGCGGCGAGATCAAAGC
AGGCCTGTGGCGGTCGCGATCACGAAGCCGCCCGAAACGGTGAGGCGCCC
TAGGGTAATGCCCTACCGCTTGTTTTGTTTGTAGCCATGCGTCAGTGTCC
GCGCAGCAGGTTCCCCGTTTTTGCTTGTACTGTAGCGGGGTTAGACTCGA
AGGCTTCTTCTGCCGCGGATTTAGGTTAAGATTTGCGGTGCATCGATTTG
TTTTGCCGGAATGTTCACATATTTGAGTGTTCTGCATCGCGCCAAGAACG
TTTCTCTAATAGTGAGGTTCTGTGGTGGAAAAGTCCTATGGATATGTTTC
TCGACTGCCTCAGGTGGTCTGCTTTCTGCCTGCGGAGAGCCAAGGAGGAG
GGGGTGTTGCGACCACAGGCGCGCCTTCGACCCGACAATGGCTGCTGTTT
GATTCGCATCCCCGCCCGCAGCTTGGGTTGGTTGGGGCAAGCGTTCGTTC
GTTCGGGGCGCAGGAAGCTCTTGTCGAAGCGTTGAACGATATATTTCCTG
CGGTTGACCTCGGCACAGACAGCGTCATGTCGAGCATGTACAACATGTTC
GACTGTGTCCCCTTGTCCTTGAAGAGATGAAAGCGAGGCACTCTTTAGGT
ATTGGGTTGTAAGGTTGTTTCTATCAACACTCACGTGTATCGCCTACAAT
AATGATGCTGGTCTGACGGTGGGCTGGTCTGACGGTGGGCTGGTCTGACG
GTGGGCTGTGCTGCGCACCGCCACGAGAAGTGTTCCTTCCCTCGCGTGTA
TA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig713:351..3652+

>mRNA_E_fasciculatus_S2_contig713.15307.1 ID=mRNA_E_fasciculatus_S2_contig713.15307.1|Name=mRNA_E_fasciculatus_S2_contig713.15307.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=795bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig713:351..3652+ (Ectocarpus fasciculatus EfasUO2)
ATGGCTTCGTTGGAACAGCTCGTCACCATGGGTTTCTCTGAGGACGAGGC
AAGGACTGCTGTTGAGGCGCATGGAGTTGGTGCGTTGGACGTACTGCTTG
GGGTTGCATCTTCAGCCCCACACCAGGTCGTCTCTGCTTCCATCAGCCAG
TACGACATCGAGAATGGGAGATCTTCGTGCACGTGCATCTGCTTGGAAGC
TTCGTTGACGGTTTTGGAGCGTTTGGGTGATGGCACCGCGTGGGCTGGCT
CGCCAGACGATGTAGCGAGCTGCGTCAACACTGGGGTGGCCATGTACGAA
GCAGTGGCAGCCACTGGCACGCTTGCGGTGGAGCACACTTCTGTCGCTGA
AATTCTCGCAGCTGTTGCCAGGTATCGCGATGCGCTGCAGCCCGCGACCG
AAAAAGTGTCGCATCAGGGCTTGCTTGGCTCGGACACGTCAATAGCCAGA
GTTCTTGGAGAGATTCAGGGTGAGCGGCGAGATCAAAGCAGGCCTGTGGC
GGTCGCGATCACGAAGCCGCCCGAAACGGTGGTCTGCTTTCTGCCTGCGG
AGAGCCAAGGAGGAGGGGGTGTTGCGACCACAGGCGCGCCTTCGACCCGA
CAATGGCTGCTGTTTGATTCGCATCCCCGCCCGCAGCTTGGGTTGGTTGG
GGCAAGCGTTCGTTCGTTCGGGGCGCAGGAAGCTCTTGTCGAAGCGTTGA
ACGATATATTTCCTGCGGTTGACCTCGGCACAGACAGCGTCATGTCGAGC
ATGTACAACATGTTCGACTGTGTCCCCTTGTCCTTGAAGAGATGA
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