mRNA_E_fasciculatus_S2_contig7127.15305.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7127.15305.1
Unique NamemRNA_E_fasciculatus_S2_contig7127.15305.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7127.15305.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4P0_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 1.040e-62
Identity = 243/313 (77.64%), Postives = 252/313 (80.51%), Query Frame = 1 
Query:    1 LQRQGWVKATSAISTTTSSGIPARAWRTPLARHLKLASFLQGGDGGYGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----PLHVAASQNILKLGSLLLAPASAASASVDPSVRDGSGRTPLHWAAMTGRADFALLLLESGAKLDAVDREHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIVRMLSACARRSRSSSLSSASAETTMVGGNGLWRXXXXXXXXXXC-GDRDAYEEERREVCKRHSFDRADLLGRPLFR 924
            ++ Q WVKATSAISTTTSSGIPARAWRTPLARHLKL SFL+ GDG  GN             XXXXXXXXXX              PLHVAASQNILKLG +LL+PA+AAS  VDP+VRDGSGRTPLHWAAMTGR DFALLLLES AKLDAVDRE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   RMLSA A+RSRS      SA  TMVGGN  WR  XXXXXXX   GDRDA EEER EVC+RHSFDRADLL RPLFR
Sbjct:   32 MRSQDWVKATSAISTTTSSGIPARAWRTPLARHLKLVSFLEAGDGCNGNSNINNNSNRVSRDXXXXXXXXXXDDCLLDEEGTMRHHPLHVAASQNILKLGRVLLSPAAAAS--VDPNVRDGSGRTPLHWAAMTGRVDFALLLLESDAKLDAVDREQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARMLSAWAQRSRSL----PSAAGTMVGGNDSWRGGXXXXXXXSGNGDRDACEEERLEVCRRHSFDRADLLRRPLFR 338
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BLAST of mRNA_E_fasciculatus_S2_contig7127.15305.1 vs.
Match: Ankyrin (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Y0_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 1.290e-46
Identity = 197/228 (86.40%), Postives = 205/228 (89.91%), Query Frame = 1 
Query:  247 PLHVAASQNILKLGSLLLAPASAASASVDPSVRDGSGRTPLHWAAMTGRADFALLLLESGAKLDAVDREHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIVRMLSACARRSRSSSLSSASAETTMVGGNGLWRXXXXXXXXXXCGD--RDAYEEERREVCKRHSFDRADLLGRPLFR 924
            PLHVAASQNILKLG++LL+PA+AAS  VDP VRDGSGRTPLHWAAMTGRADFALLLLESGAKLDAVDRE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +VRMLSACARRSR       SA  T+VGGNG+WR  XXXXXX  CGD  RDA EEER EVC+RHSFDRADLL RPLFR
Sbjct:    5 PLHVAASQNILKLGTVLLSPAAAAS--VDPCVRDGSGRTPLHWAAMTGRADFALLLLESGAKLDAVDREQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVRMLSACARRSRPL----PSAAGTVVGGNGVWRGGXXXXXXA-CGDGDRDACEEERLEVCRRHSFDRADLLRRPLFR 225
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7127.15305.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.040e-6277.64protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Ankyrin1.290e-4686.40n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7127contigE_fasciculatus_S2_contig7127:5245..6171 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score171.4
Seed ortholog evalue6.6e-40
Seed eggNOG ortholog2880.D7G1Y0
Model size927
Hectar predicted targeting categorymitochondrion
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-07_003720.1
Cds size927
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842374.8998716-CDS-E_fasciculatus_S2_contig7127:5244..61711696842374.8998716-CDS-E_fasciculatus_S2_contig7127:5244..6171Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7127 5245..6171 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7127.15305.1prot_E_fasciculatus_S2_contig7127.15305.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7127 5245..6171 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7127.15305.1

>prot_E_fasciculatus_S2_contig7127.15305.1 ID=prot_E_fasciculatus_S2_contig7127.15305.1|Name=mRNA_E_fasciculatus_S2_contig7127.15305.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=309bp
LQRQGWVKATSAISTTTSSGIPARAWRTPLARHLKLASFLQGGDGGYGNN
NNNNNNRANREDEDDDDDDDSLLEEQAATHHHPLHVAASQNILKLGSLLL
APASAASASVDPSVRDGSGRTPLHWAAMTGRADFALLLLESGAKLDAVDR
EHRTPLLSSSAFGATDSVRLLLEWGADCRKASRGGLTPLHAAAAGGHAEA
AELLIGGGASVHARTDMGCNPRHVAERQGHIDIVRMLSACARRSRSSSLS
SASAETTMVGGNGLWRGGGGGGGGGGCGDRDAYEEERREVCKRHSFDRAD
LLGRPLFR*
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mRNA from alignment at E_fasciculatus_S2_contig7127:5245..6171-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7127.15305.1 ID=mRNA_E_fasciculatus_S2_contig7127.15305.1|Name=mRNA_E_fasciculatus_S2_contig7127.15305.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=927bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7127:5245..6171- (Ectocarpus fasciculatus EfasUO2)
CTACAACGGCAGGGCTGGGTGAAAGCAACATCGGCGATCTCGACGACGAC
GTCGTCCGGCATCCCGGCCAGGGCGTGGCGGACCCCCCTGGCGCGGCACC
TCAAGCTGGCCTCCTTCCTTCAAGGGGGTGACGGCGGCTACGGCAACAAC
AACAACAACAATAACAACCGCGCAAACAGGGAAGACGAAGATGATGATGA
CGACGACGATAGCCTCCTCGAGGAACAAGCTGCCACTCACCACCACCCCC
TACACGTGGCGGCGTCCCAGAATATCCTCAAGCTCGGCAGCTTGCTCCTG
GCCCCCGCCTCCGCCGCCTCCGCCTCCGTCGACCCCAGCGTGCGGGACGG
CTCGGGCAGGACGCCCCTCCACTGGGCGGCCATGACCGGCCGCGCGGACT
TCGCGCTCCTGCTCCTCGAGAGCGGCGCCAAGCTGGACGCCGTGGACCGG
GAGCACCGGACCCCGCTCCTGTCCTCCTCGGCCTTCGGGGCCACCGACTC
CGTCCGCCTGCTGCTCGAGTGGGGCGCGGACTGCCGGAAGGCCTCGAGGG
GCGGGCTCACGCCCCTCCACGCGGCCGCCGCGGGTGGACACGCGGAGGCC
GCCGAGCTGCTGATCGGCGGCGGGGCGAGCGTCCACGCGAGGACGGACAT
GGGCTGCAACCCGCGCCACGTCGCAGAGAGGCAGGGCCACATCGACATCG
TGCGCATGCTGTCGGCTTGCGCTCGAAGGTCAAGGTCAAGCTCGCTGTCC
TCCGCGTCGGCGGAGACGACGATGGTTGGAGGAAACGGCTTGTGGCGAGG
CGGTGGCGGTGGCGGTGGCGGTGGCGGCTGCGGCGACCGGGACGCGTACG
AGGAGGAGCGGCGTGAGGTGTGCAAGCGGCACAGCTTCGACCGGGCAGAC
CTCTTGGGGCGACCTCTGTTCCGATGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7127:5245..6171-

>mRNA_E_fasciculatus_S2_contig7127.15305.1 ID=mRNA_E_fasciculatus_S2_contig7127.15305.1|Name=mRNA_E_fasciculatus_S2_contig7127.15305.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=927bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7127:5245..6171- (Ectocarpus fasciculatus EfasUO2)
CTACAACGGCAGGGCTGGGTGAAAGCAACATCGGCGATCTCGACGACGAC
GTCGTCCGGCATCCCGGCCAGGGCGTGGCGGACCCCCCTGGCGCGGCACC
TCAAGCTGGCCTCCTTCCTTCAAGGGGGTGACGGCGGCTACGGCAACAAC
AACAACAACAATAACAACCGCGCAAACAGGGAAGACGAAGATGATGATGA
CGACGACGATAGCCTCCTCGAGGAACAAGCTGCCACTCACCACCACCCCC
TACACGTGGCGGCGTCCCAGAATATCCTCAAGCTCGGCAGCTTGCTCCTG
GCCCCCGCCTCCGCCGCCTCCGCCTCCGTCGACCCCAGCGTGCGGGACGG
CTCGGGCAGGACGCCCCTCCACTGGGCGGCCATGACCGGCCGCGCGGACT
TCGCGCTCCTGCTCCTCGAGAGCGGCGCCAAGCTGGACGCCGTGGACCGG
GAGCACCGGACCCCGCTCCTGTCCTCCTCGGCCTTCGGGGCCACCGACTC
CGTCCGCCTGCTGCTCGAGTGGGGCGCGGACTGCCGGAAGGCCTCGAGGG
GCGGGCTCACGCCCCTCCACGCGGCCGCCGCGGGTGGACACGCGGAGGCC
GCCGAGCTGCTGATCGGCGGCGGGGCGAGCGTCCACGCGAGGACGGACAT
GGGCTGCAACCCGCGCCACGTCGCAGAGAGGCAGGGCCACATCGACATCG
TGCGCATGCTGTCGGCTTGCGCTCGAAGGTCAAGGTCAAGCTCGCTGTCC
TCCGCGTCGGCGGAGACGACGATGGTTGGAGGAAACGGCTTGTGGCGAGG
CGGTGGCGGTGGCGGTGGCGGTGGCGGCTGCGGCGACCGGGACGCGTACG
AGGAGGAGCGGCGTGAGGTGTGCAAGCGGCACAGCTTCGACCGGGCAGAC
CTCTTGGGGCGACCTCTGTTCCGATGA
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