mRNA_E_fasciculatus_S2_contig7127.15304.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7127.15304.1
Unique NamemRNA_E_fasciculatus_S2_contig7127.15304.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7127.15304.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y1_ECTSI)

HSP 1 Score: 263 bits (672), Expect = 2.790e-87
Identity = 144/157 (91.72%), Postives = 148/157 (94.27%), Query Frame = 1 
Query:    1 MASPPQQQQQQHVQRMDRGSFVSSESFESLTCGAPAVVIERLRQATGSADAGPDALKELGESIKKAAVDKLGGGGDKGGVEVAFGGAMGRSFYATADGSTTTADVVLFYTLDPLDIDTKQSTCVRKARTGCELSADEVMQALYKLEPCGGGDSSSGG 471
            MASPPQQQ    VQRMDRGSFVSSESFESLTCGAPAVVIERLRQATG ADAGP+ALKELGESIKKAAV+KLGGGGDKGGVEVAFGGAMGRSFYATADGSTTTADVVLFYTLDPLDIDTKQSTCVRKART CELSADEVMQALYKL+P GGGD+S  G
Sbjct:    1 MASPPQQQ----VQRMDRGSFVSSESFESLTCGAPAVVIERLRQATG-ADAGPNALKELGESIKKAAVEKLGGGGDKGGVEVAFGGAMGRSFYATADGSTTTADVVLFYTLDPLDIDTKQSTCVRKARTECELSADEVMQALYKLQP-GGGDTSDSG 151
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7127.15304.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.790e-8791.72protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7127contigE_fasciculatus_S2_contig7127:400..2040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size632
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_003710.1
Cds size528
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842374.8216646-CDS-E_fasciculatus_S2_contig7127:399..7321696842374.8216646-CDS-E_fasciculatus_S2_contig7127:399..732Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7127 400..732 +
1696842374.8353724-CDS-E_fasciculatus_S2_contig7127:1005..12001696842374.8353724-CDS-E_fasciculatus_S2_contig7127:1005..1200Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7127 1006..1200 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842374.84936-UTR-E_fasciculatus_S2_contig7127:1200..12251696842374.84936-UTR-E_fasciculatus_S2_contig7127:1200..1225Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7127 1201..1225 +
1696842374.8673327-UTR-E_fasciculatus_S2_contig7127:1961..20401696842374.8673327-UTR-E_fasciculatus_S2_contig7127:1961..2040Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7127 1962..2040 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7127.15304.1prot_E_fasciculatus_S2_contig7127.15304.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7127 400..1200 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7127.15304.1

>prot_E_fasciculatus_S2_contig7127.15304.1 ID=prot_E_fasciculatus_S2_contig7127.15304.1|Name=mRNA_E_fasciculatus_S2_contig7127.15304.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=176bp
MASPPQQQQQQHVQRMDRGSFVSSESFESLTCGAPAVVIERLRQATGSAD
AGPDALKELGESIKKAAVDKLGGGGDKGGVEVAFGGAMGRSFYATADGST
TTADVVLFYTLDPLDIDTKQSTCVRKARTGCELSADEVMQALYKLEPCGG
GDSSSGGGAGDGSSGSGGGATTSTS*
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mRNA from alignment at E_fasciculatus_S2_contig7127:400..2040+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7127.15304.1 ID=mRNA_E_fasciculatus_S2_contig7127.15304.1|Name=mRNA_E_fasciculatus_S2_contig7127.15304.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1641bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7127:400..2040+ (Ectocarpus fasciculatus EfasUO2)
ATGGCGTCGCCCCCGCAGCAGCAGCAGCAGCAGCACGTGCAACGGATGGA
CCGTGGGAGCTTCGTCTCTTCAGAGAGCTTCGAAAGTCTGACCTGCGGCG
CCCCCGCCGTCGTTATCGAGCGACTCCGCCAAGCCACCGGCTCTGCTGAC
GCCGGCCCGGATGCGCTGAAAGAGCTCGGCGAGAGCATCAAGAAGGCAGC
GGTGGACAAGTTGGGAGGGGGTGGGGACAAGGGGGGGGTGGAGGTGGCAT
TTGGGGGGGCGATGGGCCGGTCATTCTACGCCACGGCTGACGGTTCGACA
ACAACCGCGGACGTTGTCCTGTTCTACACGCTGGTGGGTTGAGTTGTCGA
GCAATATTATGGTACTGTAGGCACATGCTGCGCTCCCACGTACGATGCAG
CCATCACATTTTCCCACCCCTCGACCTCCCGACAGTACGTTGAGTTTGCA
TATACGGTGTTAGCTTTGCAGGGGCATACGCACACGCGCAAAGAAGAGAA
AATACTCGAGTGAGTCTTTCTTTGCTGGCGGAACGCCTCAAAATGCGTCG
AATAATATTGAACCAACACAACGTTCCTCCTCCGTCGAATCGCTTATTTC
TTTCAGGACCCGTTGGACATCGACACAAAACAGAGCACATGCGTTCGGAA
AGCCAGAACAGGGTGCGAACTCTCGGCGGACGAGGTGATGCAGGCACTCT
ACAAGCTTGAGCCTTGCGGGGGCGGTGACAGCAGCAGCGGCGGCGGTGCA
GGTGACGGCAGCAGCGGCAGCGGCGGCGGTGCTACCACGTCGACTTCTTA
GGGATGGCAAAGGCCAGATATAAACGGTCAGGTAGATGAGGGTCACCGCC
TTTCCAGAGCTATATGCATAGCTGTCACAGCCCCCATGGCGCCGTTTTAC
GGTGGCTGTATTCTCTTTCTTGCTTGTTTTGGCGAGGGGGGGGAGGGGGG
GGATACCGCAGGCTAGACAAATAAATGTTGTGCCGCATTTAATTTGGTAT
CGCCTACAATAACTTACTTAAGCCTTGTCTAGATTTGAACATGGGTGTGT
TTGGCCGCCCGACGTGCATGGTTGTAGTACTGCTGTAGCTCTGCATCATG
AAATCCCTGACAGATTTCCATTTTAGAGCTTGCATTTCAACCAACCGTGG
GGGATTCGGGCGTGGTCGCTGTTCGTTGTCTGCCGGCTATGAGATAATAG
AAGAACCATCCTTCCTTGTCGTTTATTTTGCTTAGCAGCCGATCGTGTTT
GTCGTAACTAAAATCGAACCTGCGAAGGTCGCCAAGGGGACCGGGGGGCT
TATGAGTTGGTTTCGTTGCGTTGTTGTCGCGGTTTCGACACAATTCCCTT
GCCTTGTCGACATGTCGTGATCTTGTCCGTAGGTATCATGTAAGTAAATG
TATATATATGTTATTCTCCCGAGTGGAAAGCCGTTTGCCACCAACTCTCG
TTTTTTTTATTGCTTAGACGGTGGGCATTGCTTTGCGGCCAGACGGGATG
TCAAAAAGTACACCAACCAATCGATCCTTGCACGTTTTGCATCTTCTTGC
GTCGTCCAACAGCCAAGACACGTACGTACAGTAATTCACCCGGCGGACTT
GCCCCGTCGCCACGGGCGTTTGGTGTTTGAATTTGATTCAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7127:400..2040+

>mRNA_E_fasciculatus_S2_contig7127.15304.1 ID=mRNA_E_fasciculatus_S2_contig7127.15304.1|Name=mRNA_E_fasciculatus_S2_contig7127.15304.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=528bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7127:400..2040+ (Ectocarpus fasciculatus EfasUO2)
ATGGCGTCGCCCCCGCAGCAGCAGCAGCAGCAGCACGTGCAACGGATGGA
CCGTGGGAGCTTCGTCTCTTCAGAGAGCTTCGAAAGTCTGACCTGCGGCG
CCCCCGCCGTCGTTATCGAGCGACTCCGCCAAGCCACCGGCTCTGCTGAC
GCCGGCCCGGATGCGCTGAAAGAGCTCGGCGAGAGCATCAAGAAGGCAGC
GGTGGACAAGTTGGGAGGGGGTGGGGACAAGGGGGGGGTGGAGGTGGCAT
TTGGGGGGGCGATGGGCCGGTCATTCTACGCCACGGCTGACGGTTCGACA
ACAACCGCGGACGTTGTCCTGTTCTACACGCTGGACCCGTTGGACATCGA
CACAAAACAGAGCACATGCGTTCGGAAAGCCAGAACAGGGTGCGAACTCT
CGGCGGACGAGGTGATGCAGGCACTCTACAAGCTTGAGCCTTGCGGGGGC
GGTGACAGCAGCAGCGGCGGCGGTGCAGGTGACGGCAGCAGCGGCAGCGG
CGGCGGTGCTACCACGTCGACTTCTTAG
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