mRNA_E_fasciculatus_S2_contig7120.15299.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7120.15299.1
Unique NamemRNA_E_fasciculatus_S2_contig7120.15299.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7120.15299.1 vs.
Match: Homoserine (dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNL8_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 1.350e-22
Identity = 63/128 (49.22%), Postives = 84/128 (65.62%), Query Frame = 1
Query:    1 MQSKIENES--YGEVLKEARDMGHAEEDLRQ------------LLAELVADATVSLASTQCKGVFSSLATEDFEYSRILHCTIKLRGTAILSTEGDRLSVFVSPVMLP-PHPMDSAEDRGSIVSVEIK 339
            M SK+E+E   YGEVLKEA+D+G+AE D               LL +L   ATV     QCKG+ SSL + DFEY++++  TIKL GTA+ S +G++LSVFVSPV++P  HP+ SA   G+IVSV+ K
Sbjct:  236 MLSKMESEGADYGEVLKEAQDLGYAEADPTADVEGFDVQAKIALLTKLAFGATVPSDLIQCKGI-SSLTSVDFEYAKMMKSTIKLLGTAMRSPDGEKLSVFVSPVLVPLSHPIASARGAGNIVSVDSK 362          
BLAST of mRNA_E_fasciculatus_S2_contig7120.15299.1 vs.
Match: Homoserine (dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAD6_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 6.720e-17
Identity = 54/125 (43.20%), Postives = 79/125 (63.20%), Query Frame = 1
Query:    1 MQSKIENES--YGEVLKEARDMGHAEEDLRQ------------LLAELVADATVSLASTQCKGVFSSLATEDFEYSRILHCTIKLRGTAILSTEGDRLSVFVSPVMLP-PHPMDSAEDRGSIVSV 330
            M SK+E+E   Y +VLKEA+ +G+AE D               LLA+L   ATV + +  C+G+ S L++ DFE++R++  TIKL GTA+L+ +G +LSVFVSPV++P   P+  A   G+IV V
Sbjct:  172 MLSKMESEGADYDDVLKEAQALGYAEADPTADVEGLDVQAKIALLAKLAFGATVPVDTVPCQGI-SQLSSADFEFARMMRSTIKLLGTAMLNADGSKLSVFVSPVVVPLTSPIAGARGAGNIVVV 295          
BLAST of mRNA_E_fasciculatus_S2_contig7120.15299.1 vs.
Match: Homoserine (dehydrogenase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z3Y2_TRICV)

HSP 1 Score: 70.1 bits (170), Expect = 7.570e-12
Identity = 48/119 (40.34%), Postives = 72/119 (60.50%), Query Frame = 1
Query:   28 YGEVLKEARDMGHAE---------EDLRQ---LLAELVADATVSLASTQCKGVFSSLATEDFEYSRILHCTIKLRGTAI-LSTEGDR---LSVFVSPVMLP-PHPMDSAEDRGSIVSVE 333
            Y +VL+EA+D+G+AE          D+R    +LA+L    TV + S  C G+ + +   DFEY+R+L CT+KL GTA  LS  G+R   LSV+V+P ++P  H + SA   G+ V+V+
Sbjct:   61 YSDVLREAQDLGYAEADPTADVEGHDVRAKIAILAKLAFGTTVPVESIPCMGI-TGVTAVDFEYARLLGCTVKLVGTAARLSKYGERDGALSVYVAPKVVPNSHLLASARGCGNAVAVD 178          
BLAST of mRNA_E_fasciculatus_S2_contig7120.15299.1 vs.
Match: Homoserine (dehydrogenase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KEY7_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.470e-11
Identity = 49/122 (40.16%), Postives = 73/122 (59.84%), Query Frame = 1
Query:   16 ENESYGEVLKEARDMGHAE---------EDLRQ---LLAELVADATVSLASTQCKGVFSSLATEDFEYSRILHCTIKLRGTAI-LSTEGDR---LSVFVSPVMLP-PHPMDSAEDRGSIVSV 330
            E   Y EVLKEA+D+G+AE          D+R    +LA+L    TV + +  C G+ + +++ DFEY+++L CTIKL GTA  LS  G+    LSV+V+P ++P  H + SA   G+ V+V
Sbjct:  172 EGAEYDEVLKEAQDLGYAEADPTADVEGHDVRAKIAILAKLAFGQTVPVDTIPCSGI-TQISSVDFEYAKLLGCTIKLVGTAARLSEYGEHDGALSVYVTPKIVPMTHLLASARGSGNAVAV 292          
BLAST of mRNA_E_fasciculatus_S2_contig7120.15299.1 vs.
Match: Homoserine (dehydrogenase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUB9_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.980e-11
Identity = 46/114 (40.35%), Postives = 65/114 (57.02%), Query Frame = 1
Query:   28 YGEVLKEARDMGHAEEDLRQ------------LLAELVADATVSLASTQCKGVFSSLATEDFEYSRILHCTIKLRGTAILSTEGDRLSVFVSPVMLP-PHPMDSAEDRGSIVSV 330
            YG+VL EA+ +G+AE D               LLA+L     V       KG+ SS+A+ DFEY+R+L+ TIKL G A LS +G +LSV VSP ++P  HP+       +IV++
Sbjct:  178 YGQVLAEAQALGYAEADPTADVEGHDVQAKIALLAKLAFGVHVPSDQIPTKGI-SSVASVDFEYARLLNATIKLLGMAQLSPDGKKLSVAVSPFIVPREHPIAGTNGSTNIVNI 290          
BLAST of mRNA_E_fasciculatus_S2_contig7120.15299.1 vs.
Match: Homoserine (dehydrogenase n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q5E2_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.000e-9
Identity = 49/124 (39.52%), Postives = 70/124 (56.45%), Query Frame = 1
Query:   16 ENESYGEVLKEARDMGHAEEDLRQ------------LLAELVADATV-SLASTQCKGVFSSLATEDFEYSRILHCTIKLRGTAI-LSTEGD---RLSVFVSPVMLPP-HPMDSAEDRGSIVSVE 333
            E   Y EVL EA+ +G+AE D               +LA+L    TV  L+S  C G+ + ++  DFEY+R+L CTIKL GTA  LS  G+    LSV+V+P ++P  H + SA   G+ V+V+
Sbjct:  228 EGAEYEEVLNEAQALGYAEADPSADVEGYDVRAKIYILAKLAFGITVPDLSSIPCMGI-TQISNVDFEYARLLGCTIKLVGTAERLSEYGEYDGALSVYVAPKVVPTSHLLASARGAGNAVAVK 350          
BLAST of mRNA_E_fasciculatus_S2_contig7120.15299.1 vs.
Match: Homoserine (dehydrogenase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R140_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 5.550e-9
Identity = 47/120 (39.17%), Postives = 68/120 (56.67%), Query Frame = 1
Query:   28 YGEVLKEARDMGHAEEDLRQ------------LLAELVADATVSL-ASTQCKGVFSSLATEDFEYSRILHCTIKLRGTAI-LSTEGDR---LSVFVSPVMLP-PHPMDSAEDRGSIVSVE 333
            Y +VLKEA+D+G AE D               +LA+L    +V +  S  C G+ S L + DFEY+++L CTIKL GTA  LS  G+    LSV+V+P ++P  H + S    G+ V+V+
Sbjct:  224 YEDVLKEAQDLGFAEADPTADVEGHDVQAKIAILAKLAFGTSVPMKTSIPCLGI-SQLTSVDFEYAKLLGCTIKLVGTATRLSEYGEHDGALSVYVAPKVVPNSHLLASIRGSGNAVAVD 342          
BLAST of mRNA_E_fasciculatus_S2_contig7120.15299.1 vs.
Match: Homoserine (dehydrogenase n=5 Tax=Bacillales TaxID=1385 RepID=K6DGY2_SCHAZ)

HSP 1 Score: 57.8 bits (138), Expect = 2.280e-7
Identity = 42/118 (35.59%), Postives = 60/118 (50.85%), Query Frame = 1
Query:   16 ENESYGEVLKEARDMGHAEED------------LRQLLAELVADATVSLASTQCKGVFSSLATEDFEYSRILHCTIKLRGTAILSTEGDRLSVFVSPVMLPP-HPMDSAEDRGSIVSV 330
            E   YGEVLKEA+++G+AE D               +LA L     + L   +  G+ SS+  ED +YS+ L  T+KL G A    E D++ V V P +LP  HP+ +  D  + V V
Sbjct:  173 EGRPYGEVLKEAQELGYAESDPTADVEGLDAARKMAILATLGFSMQIDLDDVKVSGI-SSITEEDLDYSKRLGYTMKLIGIA--DREEDKVEVSVQPTLLPNNHPLATVNDVYNAVYV 287          
BLAST of mRNA_E_fasciculatus_S2_contig7120.15299.1 vs.
Match: Homoserine (dehydrogenase (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AH45_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.300e-7
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   28 YGEVLKEARDMGHAE---------EDLRQ---LLAELVADATVSLASTQCKGVFSSLATEDFEYSRILHCTIKLRGTA 225
            Y EVLKEA+D+G AE          D+R    +LA+L    TV +    C G+ S +++ DFEY+++L+CTIKL GTA
Sbjct:  196 YDEVLKEAQDLGFAEADPTADVEGHDVRAKIAILAKLAFGTTVDVEEIPCNGI-SQISSVDFEYAKLLNCTIKLIGTA 272          
BLAST of mRNA_E_fasciculatus_S2_contig7120.15299.1 vs.
Match: Homoserine (dehydrogenase n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J2EF49_9DINO)

HSP 1 Score: 56.2 bits (134), Expect = 7.950e-7
Identity = 43/126 (34.13%), Postives = 67/126 (53.17%), Query Frame = 1
Query:    1 MQSKIENES--YGEVLKEARDMGHAEED---------LRQLLAELVADAT-VSLASTQCKGVFSSLATEDFEYSRILHCTIKLRGTAILSTEGDRLSVFVSPVMLPP-HPMDSAEDRGSIVSVEIK 339
            M SK+E E   Y +VLKEA+ +G AE D          R  L  L   A  V+L    C+G+ + ++  DFEY+++L CT+KL G      + +R+S FVSP ++P  H + +     ++ +V  K
Sbjct:  181 MLSKMETEGADYMQVLKEAQSLGFAEADPTADVGGFDARDKLGILAKLAFGVTLKDIPCEGI-TQVSKIDFEYAKMLGCTVKLLGCVKKDAKSNRVSCFVSPHLVPADHAIAACRGPTNLCAVTSK 305          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7120.15299.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
Homoserine1.350e-2249.22dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
Homoserine6.720e-1743.20dehydrogenase n=1 Tax=Tribonema minus TaxID=303371... [more]
Homoserine7.570e-1240.34dehydrogenase (Fragment) n=1 Tax=Trieres chinensis... [more]
Homoserine1.470e-1140.16dehydrogenase n=1 Tax=Leptocylindrus danicus TaxID... [more]
Homoserine1.980e-1140.35dehydrogenase n=2 Tax=Monodopsidaceae TaxID=425072... [more]
Homoserine3.000e-939.52dehydrogenase n=2 Tax=Chaetoceros debilis TaxID=12... [more]
Homoserine5.550e-939.17dehydrogenase n=1 Tax=Eucampia antarctica TaxID=49... [more]
Homoserine2.280e-735.59dehydrogenase n=5 Tax=Bacillales TaxID=1385 RepID=... [more]
Homoserine3.300e-743.59dehydrogenase (Fragment) n=1 Tax=Minutocellus poly... [more]
Homoserine7.950e-734.13dehydrogenase n=1 Tax=Amoebophrya sp. A25 TaxID=14... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7120contigE_fasciculatus_S2_contig7120:6429..7337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score102.1
Seed ortholog evalue1.8e-19
Seed eggNOG ortholog2880.D7FNL8
Model size345
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Homoserine dehydrogenase
EggNOG OGs2QT5B@2759,COG0460@1
Cds size345
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842374.3985517-CDS-E_fasciculatus_S2_contig7120:6428..65011696842374.3985517-CDS-E_fasciculatus_S2_contig7120:6428..6501Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7120 6429..6501 +
1696842374.410415-CDS-E_fasciculatus_S2_contig7120:6836..68951696842374.410415-CDS-E_fasciculatus_S2_contig7120:6836..6895Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7120 6837..6895 +
1696842374.42162-CDS-E_fasciculatus_S2_contig7120:7124..73371696842374.42162-CDS-E_fasciculatus_S2_contig7120:7124..7337Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7120 7125..7337 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7120.15299.1prot_E_fasciculatus_S2_contig7120.15299.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7120 6429..7337 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7120.15299.1

>prot_E_fasciculatus_S2_contig7120.15299.1 ID=prot_E_fasciculatus_S2_contig7120.15299.1|Name=mRNA_E_fasciculatus_S2_contig7120.15299.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=115bp
MQSKIENESYGEVLKEARDMGHAEEDLRQLLAELVADATVSLASTQCKGV
FSSLATEDFEYSRILHCTIKLRGTAILSTEGDRLSVFVSPVMLPPHPMDS
AEDRGSIVSVEIKV*
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mRNA from alignment at E_fasciculatus_S2_contig7120:6429..7337+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7120.15299.1 ID=mRNA_E_fasciculatus_S2_contig7120.15299.1|Name=mRNA_E_fasciculatus_S2_contig7120.15299.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=909bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7120:6429..7337+ (Ectocarpus fasciculatus EfasUO2)
ATGCAGTCCAAGATAGAGAATGAGAGCTACGGAGAAGTTCTGAAGGAGGC GCGGGACATGGGTCACGCCGAGGGTGAGTTTCCCCTTTTCTGTCAACTCT TTTGCTTTGAATGCTTGGCACGAGCGTACTTTCCAGGTCGGCACCCTTTT CTCTCGTCGGACTCGCTTTGAACCGCGCCAACACGTTTTGAAACCTGCAC TGAATACGCTACTTTTTTGCAGGCGAAGTGCCATGTAAAAGGCGTGCCCA AACTCCCAAACCAACGGAGGGATCCTCCCCCCAATCGTCGGCCTTGTGGT TTGTTTTGCTTCGACGCCCATATCGCATCCCAAGGAAGTGTAACGTTATG CAGATGAGATGTACATCCGCTGTTTTTTTCCGTCGCCCGTTACTCTTGCG TGTTGTAGAGGACCTTCGGCAACTTCTCGCGGAGCTGGTGGCCGACGCTA CAGTGTCGTTGGCGTCGGTGAGTTTGGATCTACAGGGGTGGGAAGGGGGC ACATTTCGTGGAAGGGGGTCTTGGGGGGATGTGTCTTGCTTCTTGCACAG TACTAGGAGATGAGACGTATGTTGCTTGCTTGGTCGAAACAGATTGCAGA ACCGGAATTGCTTGCTGTAGCATTCCTCGGTGTCCTCCTGCACTTCCTTT ACCCTGCCGTGTCGATGTCACTCCATGCTTGAACTGCTGTGAGCAGACCC AGTGCAAAGGGGTGTTTTCGTCCCTGGCAACGGAAGACTTCGAGTACTCC AGGATATTGCACTGCACCATCAAGTTGAGGGGCACCGCGATACTCTCAAC CGAGGGCGACAGGCTGTCAGTATTCGTGTCCCCCGTCATGCTACCACCGC ATCCTATGGATTCGGCCGAGGACCGTGGAAGCATCGTCTCGGTTGAGATC AAGGTATGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7120:6429..7337+

>mRNA_E_fasciculatus_S2_contig7120.15299.1 ID=mRNA_E_fasciculatus_S2_contig7120.15299.1|Name=mRNA_E_fasciculatus_S2_contig7120.15299.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=345bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7120:6429..7337+ (Ectocarpus fasciculatus EfasUO2)
ATGCAGTCCAAGATAGAGAATGAGAGCTACGGAGAAGTTCTGAAGGAGGC
GCGGGACATGGGTCACGCCGAGGAGGACCTTCGGCAACTTCTCGCGGAGC
TGGTGGCCGACGCTACAGTGTCGTTGGCGTCGACCCAGTGCAAAGGGGTG
TTTTCGTCCCTGGCAACGGAAGACTTCGAGTACTCCAGGATATTGCACTG
CACCATCAAGTTGAGGGGCACCGCGATACTCTCAACCGAGGGCGACAGGC
TGTCAGTATTCGTGTCCCCCGTCATGCTACCACCGCATCCTATGGATTCG
GCCGAGGACCGTGGAAGCATCGTCTCGGTTGAGATCAAGGTATGA
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