mRNA_E_fasciculatus_S2_contig7120.15299.1 (mRNA) Ectocarpus fasciculatus EfasUO2
|
Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig7120.15299.1 vs.
Match: Homoserine (dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNL8_ECTSI) HSP 1 Score: 100 bits (250), Expect = 1.350e-22 Identity = 63/128 (49.22%), Postives = 84/128 (65.62%), Query Frame = 1
Query: 1 MQSKIENES--YGEVLKEARDMGHAEEDLRQ------------LLAELVADATVSLASTQCKGVFSSLATEDFEYSRILHCTIKLRGTAILSTEGDRLSVFVSPVMLP-PHPMDSAEDRGSIVSVEIK 339
M SK+E+E YGEVLKEA+D+G+AE D LL +L ATV QCKG+ SSL + DFEY++++ TIKL GTA+ S +G++LSVFVSPV++P HP+ SA G+IVSV+ K
Sbjct: 236 MLSKMESEGADYGEVLKEAQDLGYAEADPTADVEGFDVQAKIALLTKLAFGATVPSDLIQCKGI-SSLTSVDFEYAKMMKSTIKLLGTAMRSPDGEKLSVFVSPVLVPLSHPIASARGAGNIVSVDSK 362
BLAST of mRNA_E_fasciculatus_S2_contig7120.15299.1 vs.
Match: Homoserine (dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAD6_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 6.720e-17 Identity = 54/125 (43.20%), Postives = 79/125 (63.20%), Query Frame = 1
Query: 1 MQSKIENES--YGEVLKEARDMGHAEEDLRQ------------LLAELVADATVSLASTQCKGVFSSLATEDFEYSRILHCTIKLRGTAILSTEGDRLSVFVSPVMLP-PHPMDSAEDRGSIVSV 330
M SK+E+E Y +VLKEA+ +G+AE D LLA+L ATV + + C+G+ S L++ DFE++R++ TIKL GTA+L+ +G +LSVFVSPV++P P+ A G+IV V
Sbjct: 172 MLSKMESEGADYDDVLKEAQALGYAEADPTADVEGLDVQAKIALLAKLAFGATVPVDTVPCQGI-SQLSSADFEFARMMRSTIKLLGTAMLNADGSKLSVFVSPVVVPLTSPIAGARGAGNIVVV 295
BLAST of mRNA_E_fasciculatus_S2_contig7120.15299.1 vs.
Match: Homoserine (dehydrogenase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z3Y2_TRICV) HSP 1 Score: 70.1 bits (170), Expect = 7.570e-12 Identity = 48/119 (40.34%), Postives = 72/119 (60.50%), Query Frame = 1
Query: 28 YGEVLKEARDMGHAE---------EDLRQ---LLAELVADATVSLASTQCKGVFSSLATEDFEYSRILHCTIKLRGTAI-LSTEGDR---LSVFVSPVMLP-PHPMDSAEDRGSIVSVE 333
Y +VL+EA+D+G+AE D+R +LA+L TV + S C G+ + + DFEY+R+L CT+KL GTA LS G+R LSV+V+P ++P H + SA G+ V+V+
Sbjct: 61 YSDVLREAQDLGYAEADPTADVEGHDVRAKIAILAKLAFGTTVPVESIPCMGI-TGVTAVDFEYARLLGCTVKLVGTAARLSKYGERDGALSVYVAPKVVPNSHLLASARGCGNAVAVD 178
BLAST of mRNA_E_fasciculatus_S2_contig7120.15299.1 vs.
Match: Homoserine (dehydrogenase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KEY7_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 1.470e-11 Identity = 49/122 (40.16%), Postives = 73/122 (59.84%), Query Frame = 1
Query: 16 ENESYGEVLKEARDMGHAE---------EDLRQ---LLAELVADATVSLASTQCKGVFSSLATEDFEYSRILHCTIKLRGTAI-LSTEGDR---LSVFVSPVMLP-PHPMDSAEDRGSIVSV 330
E Y EVLKEA+D+G+AE D+R +LA+L TV + + C G+ + +++ DFEY+++L CTIKL GTA LS G+ LSV+V+P ++P H + SA G+ V+V
Sbjct: 172 EGAEYDEVLKEAQDLGYAEADPTADVEGHDVRAKIAILAKLAFGQTVPVDTIPCSGI-TQISSVDFEYAKLLGCTIKLVGTAARLSEYGEHDGALSVYVTPKIVPMTHLLASARGSGNAVAV 292
BLAST of mRNA_E_fasciculatus_S2_contig7120.15299.1 vs.
Match: Homoserine (dehydrogenase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUB9_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 1.980e-11 Identity = 46/114 (40.35%), Postives = 65/114 (57.02%), Query Frame = 1
Query: 28 YGEVLKEARDMGHAEEDLRQ------------LLAELVADATVSLASTQCKGVFSSLATEDFEYSRILHCTIKLRGTAILSTEGDRLSVFVSPVMLP-PHPMDSAEDRGSIVSV 330
YG+VL EA+ +G+AE D LLA+L V KG+ SS+A+ DFEY+R+L+ TIKL G A LS +G +LSV VSP ++P HP+ +IV++
Sbjct: 178 YGQVLAEAQALGYAEADPTADVEGHDVQAKIALLAKLAFGVHVPSDQIPTKGI-SSVASVDFEYARLLNATIKLLGMAQLSPDGKKLSVAVSPFIVPREHPIAGTNGSTNIVNI 290
BLAST of mRNA_E_fasciculatus_S2_contig7120.15299.1 vs.
Match: Homoserine (dehydrogenase n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q5E2_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 3.000e-9 Identity = 49/124 (39.52%), Postives = 70/124 (56.45%), Query Frame = 1
Query: 16 ENESYGEVLKEARDMGHAEEDLRQ------------LLAELVADATV-SLASTQCKGVFSSLATEDFEYSRILHCTIKLRGTAI-LSTEGD---RLSVFVSPVMLPP-HPMDSAEDRGSIVSVE 333
E Y EVL EA+ +G+AE D +LA+L TV L+S C G+ + ++ DFEY+R+L CTIKL GTA LS G+ LSV+V+P ++P H + SA G+ V+V+
Sbjct: 228 EGAEYEEVLNEAQALGYAEADPSADVEGYDVRAKIYILAKLAFGITVPDLSSIPCMGI-TQISNVDFEYARLLGCTIKLVGTAERLSEYGEYDGALSVYVAPKVVPTSHLLASARGAGNAVAVK 350
BLAST of mRNA_E_fasciculatus_S2_contig7120.15299.1 vs.
Match: Homoserine (dehydrogenase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R140_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 5.550e-9 Identity = 47/120 (39.17%), Postives = 68/120 (56.67%), Query Frame = 1
Query: 28 YGEVLKEARDMGHAEEDLRQ------------LLAELVADATVSL-ASTQCKGVFSSLATEDFEYSRILHCTIKLRGTAI-LSTEGDR---LSVFVSPVMLP-PHPMDSAEDRGSIVSVE 333
Y +VLKEA+D+G AE D +LA+L +V + S C G+ S L + DFEY+++L CTIKL GTA LS G+ LSV+V+P ++P H + S G+ V+V+
Sbjct: 224 YEDVLKEAQDLGFAEADPTADVEGHDVQAKIAILAKLAFGTSVPMKTSIPCLGI-SQLTSVDFEYAKLLGCTIKLVGTATRLSEYGEHDGALSVYVAPKVVPNSHLLASIRGSGNAVAVD 342
BLAST of mRNA_E_fasciculatus_S2_contig7120.15299.1 vs.
Match: Homoserine (dehydrogenase n=5 Tax=Bacillales TaxID=1385 RepID=K6DGY2_SCHAZ) HSP 1 Score: 57.8 bits (138), Expect = 2.280e-7 Identity = 42/118 (35.59%), Postives = 60/118 (50.85%), Query Frame = 1
Query: 16 ENESYGEVLKEARDMGHAEED------------LRQLLAELVADATVSLASTQCKGVFSSLATEDFEYSRILHCTIKLRGTAILSTEGDRLSVFVSPVMLPP-HPMDSAEDRGSIVSV 330
E YGEVLKEA+++G+AE D +LA L + L + G+ SS+ ED +YS+ L T+KL G A E D++ V V P +LP HP+ + D + V V
Sbjct: 173 EGRPYGEVLKEAQELGYAESDPTADVEGLDAARKMAILATLGFSMQIDLDDVKVSGI-SSITEEDLDYSKRLGYTMKLIGIA--DREEDKVEVSVQPTLLPNNHPLATVNDVYNAVYV 287
BLAST of mRNA_E_fasciculatus_S2_contig7120.15299.1 vs.
Match: Homoserine (dehydrogenase (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AH45_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 3.300e-7 Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1
Query: 28 YGEVLKEARDMGHAE---------EDLRQ---LLAELVADATVSLASTQCKGVFSSLATEDFEYSRILHCTIKLRGTA 225
Y EVLKEA+D+G AE D+R +LA+L TV + C G+ S +++ DFEY+++L+CTIKL GTA
Sbjct: 196 YDEVLKEAQDLGFAEADPTADVEGHDVRAKIAILAKLAFGTTVDVEEIPCNGI-SQISSVDFEYAKLLNCTIKLIGTA 272
BLAST of mRNA_E_fasciculatus_S2_contig7120.15299.1 vs.
Match: Homoserine (dehydrogenase n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J2EF49_9DINO) HSP 1 Score: 56.2 bits (134), Expect = 7.950e-7 Identity = 43/126 (34.13%), Postives = 67/126 (53.17%), Query Frame = 1
Query: 1 MQSKIENES--YGEVLKEARDMGHAEED---------LRQLLAELVADAT-VSLASTQCKGVFSSLATEDFEYSRILHCTIKLRGTAILSTEGDRLSVFVSPVMLPP-HPMDSAEDRGSIVSVEIK 339
M SK+E E Y +VLKEA+ +G AE D R L L A V+L C+G+ + ++ DFEY+++L CT+KL G + +R+S FVSP ++P H + + ++ +V K
Sbjct: 181 MLSKMETEGADYMQVLKEAQSLGFAEADPTADVGGFDARDKLGILAKLAFGVTLKDIPCEGI-TQVSKIDFEYAKMLGCTVKLLGCVKKDAKSNRVSCFVSPHLVPADHAIAACRGPTNLCAVTSK 305 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7120.15299.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig7120.15299.1 >prot_E_fasciculatus_S2_contig7120.15299.1 ID=prot_E_fasciculatus_S2_contig7120.15299.1|Name=mRNA_E_fasciculatus_S2_contig7120.15299.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=115bp MQSKIENESYGEVLKEARDMGHAEEDLRQLLAELVADATVSLASTQCKGVback to top mRNA from alignment at E_fasciculatus_S2_contig7120:6429..7337+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig7120.15299.1 ID=mRNA_E_fasciculatus_S2_contig7120.15299.1|Name=mRNA_E_fasciculatus_S2_contig7120.15299.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=909bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7120:6429..7337+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7120:6429..7337+ >mRNA_E_fasciculatus_S2_contig7120.15299.1 ID=mRNA_E_fasciculatus_S2_contig7120.15299.1|Name=mRNA_E_fasciculatus_S2_contig7120.15299.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=345bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7120:6429..7337+ (Ectocarpus fasciculatus EfasUO2)back to top |