mRNA_E_fasciculatus_S2_contig7109.15286.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7109.15286.1
Unique NamemRNA_E_fasciculatus_S2_contig7109.15286.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7109.15286.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUQ6_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 7.550e-47
Identity = 155/220 (70.45%), Postives = 159/220 (72.27%), Query Frame = 1 
Query:   73 MSALTDIFTVKDKVSTKKNREEKDKDKGFKITSLFDAGLTAGAATAENPTPAGGDGV---GGTTTGLFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDG------------GHADGESQPGGPLPISNGXXXXXXAVVAETALWRPLDEVVAVAARFMRTGKREDVETAWLGERRALTQDFKRKHKDAVKGRRGA 687
            MSALTDIFTVKDKVS+KKNREEKDKDKGFKITSLFDAGLTAG                   G      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX              S              G A GESQPGG LP+S  XXXXXX VV ETALWRPLDEVVA+AARFMRTGKREDVE AW+GERRALTQDFKRKHKDAVKGRRGA
Sbjct:    1 MSALTDIFTVKDKVSSKKNREEKDKDKGFKITSLFDAGLTAGXXXXXXXXXXXXXXXXXXAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVLVEGQARPAASLSSXXXXXXXXXXXXXGDAGGESQPGGTLPVSX-XXXXXXXVVVETALWRPLDEVVAIAARFMRTGKREDVEAAWIGERRALTQDFKRKHKDAVKGRRGA 219
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BLAST of mRNA_E_fasciculatus_S2_contig7109.15286.1 vs.
Match: RRM (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS94_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 1.840e-15
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:  541 LDEVVAVAARFMRTGKREDVETAWLGERRALTQDFKRKHKDAVKGRRGA 687
            LD+ +A   RFMRTGKREDVE AWLGERRALTQDFKRKHKDAVKGRRGA
Sbjct:  429 LDDRLAELLRFMRTGKREDVEAAWLGERRALTQDFKRKHKDAVKGRRGA 477
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7109.15286.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized7.550e-4770.45protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
RRM1.840e-1585.71domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7109contigE_fasciculatus_S2_contig7109:3170..3864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size696
Hectar predicted targeting categoryother localisation
Exons1
Cds size693
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842373.0851998-CDS-E_fasciculatus_S2_contig7109:3169..38621696842373.0851998-CDS-E_fasciculatus_S2_contig7109:3169..3862Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7109 3170..3862 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7109.15286.1prot_E_fasciculatus_S2_contig7109.15286.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7109 3170..3862 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7109.15286.1

>prot_E_fasciculatus_S2_contig7109.15286.1 ID=prot_E_fasciculatus_S2_contig7109.15286.1|Name=mRNA_E_fasciculatus_S2_contig7109.15286.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=231bp
ATGRGGGGVGHQDGGGGPERFVAHMSALTDIFTVKDKVSTKKNREEKDKD
KGFKITSLFDAGLTAGAATAENPTPAGGDGVGGTTTGLFSFGFGGERAGA
PAAAAAAGDGGTGAVPVEGQARSAASLSLATAATAAAAAASVSDGGHADG
ESQPGGPLPISNGGGGGGGAVVAETALWRPLDEVVAVAARFMRTGKREDV
ETAWLGERRALTQDFKRKHKDAVKGRRGATA
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mRNA from alignment at E_fasciculatus_S2_contig7109:3170..3864+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7109.15286.1 ID=mRNA_E_fasciculatus_S2_contig7109.15286.1|Name=mRNA_E_fasciculatus_S2_contig7109.15286.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=695bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7109:3170..3864+ (Ectocarpus fasciculatus EfasUO2)
GCTACGGGGCGGGGCGGTGGAGGAGTGGGGCACCAAGATGGAGGGGGGGG
TCCAGAGCGGTTCGTGGCGCACATGTCGGCGCTGACCGACATCTTCACCG
TGAAGGACAAGGTTAGCACCAAGAAGAACAGGGAGGAGAAGGACAAGGAC
AAGGGGTTCAAGATCACCTCGCTCTTCGACGCCGGTCTCACGGCGGGGGC
GGCGACGGCGGAAAATCCGACCCCGGCCGGCGGGGACGGAGTGGGCGGCA
CCACCACCGGACTCTTCTCCTTCGGCTTTGGCGGCGAGCGAGCCGGAGCA
CCGGCGGCGGCGGCGGCGGCCGGCGATGGAGGTACCGGCGCAGTCCCGGT
CGAAGGGCAAGCGCGGTCGGCGGCTAGCCTGTCGCTGGCCACCGCCGCGA
CGGCTGCTGCTGCTGCTGCTTCTGTGTCAGACGGGGGGCACGCCGACGGA
GAATCCCAACCGGGGGGACCCCTCCCGATCTCCAACGGCGGCGGCGGCGG
CGGCGGCGCTGTTGTAGCGGAGACTGCGTTGTGGCGCCCGCTGGACGAAG
TCGTGGCCGTCGCGGCCAGGTTCATGAGGACCGGCAAGAGGGAGGACGTG
GAAACGGCGTGGCTCGGGGAGCGGCGGGCGCTGACCCAGGACTTCAAGCG
CAAGCACAAGGACGCCGTCAAGGGGCGACGCGGGGCGACGGCGGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7109:3170..3864+

>mRNA_E_fasciculatus_S2_contig7109.15286.1 ID=mRNA_E_fasciculatus_S2_contig7109.15286.1|Name=mRNA_E_fasciculatus_S2_contig7109.15286.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=693bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7109:3170..3864+ (Ectocarpus fasciculatus EfasUO2)
GCTACGGGGCGGGGCGGTGGAGGAGTGGGGCACCAAGATGGAGGGGGGGG
TCCAGAGCGGTTCGTGGCGCACATGTCGGCGCTGACCGACATCTTCACCG
TGAAGGACAAGGTTAGCACCAAGAAGAACAGGGAGGAGAAGGACAAGGAC
AAGGGGTTCAAGATCACCTCGCTCTTCGACGCCGGTCTCACGGCGGGGGC
GGCGACGGCGGAAAATCCGACCCCGGCCGGCGGGGACGGAGTGGGCGGCA
CCACCACCGGACTCTTCTCCTTCGGCTTTGGCGGCGAGCGAGCCGGAGCA
CCGGCGGCGGCGGCGGCGGCCGGCGATGGAGGTACCGGCGCAGTCCCGGT
CGAAGGGCAAGCGCGGTCGGCGGCTAGCCTGTCGCTGGCCACCGCCGCGA
CGGCTGCTGCTGCTGCTGCTTCTGTGTCAGACGGGGGGCACGCCGACGGA
GAATCCCAACCGGGGGGACCCCTCCCGATCTCCAACGGCGGCGGCGGCGG
CGGCGGCGCTGTTGTAGCGGAGACTGCGTTGTGGCGCCCGCTGGACGAAG
TCGTGGCCGTCGCGGCCAGGTTCATGAGGACCGGCAAGAGGGAGGACGTG
GAAACGGCGTGGCTCGGGGAGCGGCGGGCGCTGACCCAGGACTTCAAGCG
CAAGCACAAGGACGCCGTCAAGGGGCGACGCGGGGCGACGGCG
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