mRNA_E_fasciculatus_S2_contig7107.15284.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7107.15284.1
Unique NamemRNA_E_fasciculatus_S2_contig7107.15284.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7107.15284.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW0_ECTSI)

HSP 1 Score: 275 bits (702), Expect = 2.790e-79
Identity = 349/589 (59.25%), Postives = 378/589 (64.18%), Query Frame = 1 
Query:    1 MNNGTPXXXXXXXXXXXXXKRHPALAPSLPKSLITKKIPAPRPEDVARAKKAAVEDTKKEEVCTICLDALPDIGRGILACGHTFCFGCIHIWSQSK-ERALCPTCRVPFNKIKKTLTPKDMAKEKLRNERDKKRKNATKKQRDRMRRRRASVKQPCEKVFVKDVRVRKLSHKKRLAQAAREAHPQVSLFSTMGSAAAARQATFEA-------YAVQHQANLLATRARREAELRDQHQTQLTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAEQGGTPLGGVSASYDSVNAAAATPXXXXXXXXXXXXXXXXXXXXXXXXXXGAAAPRGPRMRYTVAGFTNDSIIPRGRSFATAAEAAAFSAGHASYAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQDHARLMREMDAVNAAAFTESFAYMTRETERLRAQQRTADRSRRLGEGEEXXXXXXXXXXXXXXXXXXXXXVSEVAXXXVAAAELPSSRMDLLARLAGLEEPMPARRTST-AVSLNSSAS 1740
            MNNGTP             KRHPALAP LPKSLITKKIPAP PEDV R +KAA +D KK E+C ICL+ALPDI RGI+ACGHTFCFGCIH W+ ++ + ALCP+CR PFNKIKKTL+PKD+ KEKLRNERD                R A VKQP +K+FVKDVRVRK+S KK+  + AR  HP+ +     GS  A +QA   A                                      XXXXXXXXXXXXXXXXXXXXXXXXXXXX    RAEQ G   G VS  +DSV AAAA P XXXXXXXXXXXXXXXXXXXXXXXX GAAA RGPRMRYTVAGF N+SI+ RGRSFA+AAEAAAFSA  ASYAA                            XXXXXXXXXXXXXXXXXXXXXXXX                  XXXXXXXXXXXXXXX               L R M AVNAAA   + A +T E ERLRAQ+R ADRSRRLGE EEXXXXXXXXXXXXXXXXXXXXX     XX    AE+PS RMDLLARLAGLEE MPARR +  A SLNSSAS
Sbjct:    1 MNNGTPPGDAPNNN-----KRHPALAPFLPKSLITKKIPAPHPEDVERTRKAAADDAKKGELCIICLEALPDIERGIIACGHTFCFGCIHDWASNRGDSALCPSCRFPFNKIKKTLSPKDIEKEKLRNERDXXXXXXXXXXXXXXXXRAARVKQPVDKIFVKDVRVRKMSKKKQAIEEARTVHPEAA----GGSMNAGQQAMLRARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVKARAEQRGASPGVVSEWWDSVAAAAAAPAXXXXXXXXXXXXXXXXXXXXXXXXSGAAATRGPRMRYTVAGFANNSIMGRGRSFASAAEAAAFSASRASYAAAAEPVRFSNSSILPISTPRGLAIATATAXXXXXXXXXXXXXXXXXXXXXXXXRLRAQRRATERSGRLGEEXXXXXXXXXXXXXXXLS-------------LERTMAAVNAAAARRALASITLEAERLRAQRRAADRSRRLGEVEEXXXXXXXXXXXXXXXXXXXXXXXXXXXX----AEVPS-RMDLLARLAGLEERMPARRAAPGAASLNSSAS 562
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7107.15284.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L829_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 9.170e-60
Identity = 320/661 (48.41%), Postives = 354/661 (53.56%), Query Frame = 1 
Query:    1 MNNGTPXXXXXXXXXXXXXKRHPALAPSLPKSLITKKIPAPRPEDVARAKKAAVEDTKKEEVCTICLDALPDIGRGILACGHTFCFGCIHIWS-QSKERALCPTCRVPFNKIKKTLTPKDMAKEKLRNERDKKRKNATKKQRDRMRRRRASVKQPCEKVFVKDVRVRKLSHKKRLAQAAREAHPQV---SLFSTMGSAAAARQATFEAYAVQHQANLLATRARREAELRDQHQTQLTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAEQGGTPLGGVSASYDSVNAAAATPXXXXXXXXXXXXXXXXXXXXXXXXXXGAAAPR--GPRMRYTVAGFTNDSIIP----RGRSFATAAEAAAFSAGHASYAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQDHARLMREMDAVNAAAFTESFAYMTRETERLRAQQRTADRSRRLGEGEEXXXXXXXXXXXXXXXXXXXXXVSEVAXXXVAAAELPSSRMDLLARLAGLEEPMPARRTSTAVSLNSSASPPPSISATARVTRSVTRNTRWSSASSXXXXXXXXEVVAAAAIPTRVSPRRTRTMSVALERWVASGQGGGGG 1953
            MNNGTP             KRHPALAP LPKSLITKKIPAP PEDV R KKAA +D KK E+C IC +ALPDI RGI+ACGHTFCFGCIH WS +S +  LCP+CRVPFNKIKKTL+PKD+ KEKLRNE DK                          +FVKD+RVRK+S KK+  + AR  HP     S+ +   +   ARQ   E                                XXXXXXXXXXXXXXXXXXXXXXXXXXXXX   RAEQ G   G VS  +DSV AAAATP XXX                       AA P    P     V  F+N SI+P    RG + A                                                             XXXXXXXXXXXXXXXXXXXXXXXXXXXXX           XXXXXXXXXX      L R M AV+A A     A +T+  ERLRAQ+R ADRSRRL E E+        XXXXXXXXXXXXX     XXX     +PS RMDLLARLAGLEEPMPARR + A S +      PSISATA VTRS TRNTR   +  XXXXXXX EVV  A  PT VSPRR   +S A+  W+A+  GG GG
Sbjct:    1 MNNGTPPGDAPTNN-----KRHPALAPVLPKSLITKKIPAPHPEDVERTKKAAADDAKKGELCIICQEALPDIERGIIACGHTFCFGCIHTWSSRSGDSVLCPSCRVPFNKIKKTLSPKDVEKEKLRNEVDK--------------------------IFVKDIRVRKMSKKKKAIEEARTLHPDAAGGSMNAGQQAMLRARQLAIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKTRAEQRGASPGVVSDWWDSVAAAAATPAXXXAVR--------------------AATPAVATPAADEPVR-FSNSSILPISTPRGLAIAX------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTARSGRLGEEEXXXXXXXXXXXXXELSLERTMAAVHATAARRELASITQVAERLRAQRRAADRSRRLEEVEKEERSLQREXXXXXXXXXXXXXXXXXXXXXXXXXAVPS-RMDLLARLAGLEEPMPARRAADATSAS------PSISATAGVTRSATRNTR---SXXXXXXXXXTEVVTVA--PTWVSPRRR--LSEAVATWLANAGGGDGG 535
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7107.15284.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A7_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 9.830e-15
Identity = 48/124 (38.71%), Postives = 66/124 (53.23%), Query Frame = 1 
Query:   58 KRHPALAPSLPKSLITKKIPAPRPEDVARAKKAAVEDTKKE-------------------EVCTICLDALPDIGRGILACGHTFCFGCIHIWSQSKERALCPTCRVPFNKIKKTLTPKDMAKEK 372
            K  P LAP+  +S +T+  P P  E +AR +  + E+  +                     +C IC D LPD+ RG+L+CGH FCF CIH W+  K  ++CP CRV   +I KTL+P D AK K
Sbjct:   19 KNQPTLAPTPDQSEVTRTAPLPE-ELIARTEGVSKEEEARRVERAXXXXXXXXXXXXXXXXMCAICCDKLPDLERGVLSCGHVFCFACIHQWT--KNSSICPGCRVQIKRITKTLSPADEAKSK 139
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig7107.15284.1 vs.
Match: Similar (to PHD finger family protein, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV7_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 2.480e-14
Identity = 69/191 (36.13%), Postives = 92/191 (48.17%), Query Frame = 1 
Query:   58 KRHPALAPSLPKSLITKKIPAPRPEDVARAKKAAVEDTKKEE--------------------VCTICLDALPDIGRGILACGHTFCFGCIHIWSQSKERALCPTCRVPFNKIKKTLTPKDMAKEK------LRNERDKKRKNATKKQRDRMRRRRASVKQPCEKVFVKDVRVRKLSHKKRLAQAAREAHPQ 552
            K  P LAP+  +S +T+  P P  E +AR +  + E                          +C IC D LP++ RG+L+CGH FCF CIH W+  K  ++CP CRV   +I KTL+P D AK K      + ++R  K+K   +KQ  R R R +  K P      K VRVR  S K   AQ     HPQ
Sbjct:  114 KNQPTLAPTPDQSEVTRTAPLPE-ELIARTEGVSKEXXXXXXXXXXXXXXXXXXXXXXXXXXMCAICCDKLPNLERGVLSCGHVFCFACIHQWT--KNSSICPGCRVQIKRITKTLSPADEAKAKGETRKPVVSQRGMKKK--PRKQLKRARHRDSRAKNPASGFVTKTVRVRPKSLKMTPAQQRAAPHPQ 299
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7107.15284.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
RING-type2.790e-7959.25domain-containing protein n=1 Tax=Ectocarpus silic... [more]
RING-type9.170e-6048.41domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
RING-type9.830e-1538.71domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Similar2.480e-1436.13to PHD finger family protein, partial n=1 Tax=Ecto... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7107contigE_fasciculatus_S2_contig7107:57..5020 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score64.3
Seed ortholog evalue2.4e-07
Seed eggNOG ortholog2880.D8LMP5
Model size1965
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.RING-type zinc-finger
EggNOG OGs2D0HG@1,2SE7A@2759
Cds size1965
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7107.15284.1prot_E_fasciculatus_S2_contig7107.15284.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7107 57..5020 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842372.9747014-CDS-E_fasciculatus_S2_contig7107:56..1891696842372.9747014-CDS-E_fasciculatus_S2_contig7107:56..189Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7107 57..189 +
1696842372.9878933-CDS-E_fasciculatus_S2_contig7107:755..8621696842372.9878933-CDS-E_fasciculatus_S2_contig7107:755..862Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7107 756..862 +
1696842372.998146-CDS-E_fasciculatus_S2_contig7107:1545..16891696842372.998146-CDS-E_fasciculatus_S2_contig7107:1545..1689Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7107 1546..1689 +
1696842373.0082865-CDS-E_fasciculatus_S2_contig7107:1975..20531696842373.0082865-CDS-E_fasciculatus_S2_contig7107:1975..2053Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7107 1976..2053 +
1696842373.0179594-CDS-E_fasciculatus_S2_contig7107:2928..30331696842373.0179594-CDS-E_fasciculatus_S2_contig7107:2928..3033Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7107 2929..3033 +
1696842373.0281951-CDS-E_fasciculatus_S2_contig7107:3622..50201696842373.0281951-CDS-E_fasciculatus_S2_contig7107:3622..5020Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7107 3623..5020 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7107.15284.1

>prot_E_fasciculatus_S2_contig7107.15284.1 ID=prot_E_fasciculatus_S2_contig7107.15284.1|Name=mRNA_E_fasciculatus_S2_contig7107.15284.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=655bp
MNNGTPPGGAPNNNNNNNNKRHPALAPSLPKSLITKKIPAPRPEDVARAK
KAAVEDTKKEEVCTICLDALPDIGRGILACGHTFCFGCIHIWSQSKERAL
CPTCRVPFNKIKKTLTPKDMAKEKLRNERDKKRKNATKKQRDRMRRRRAS
VKQPCEKVFVKDVRVRKLSHKKRLAQAAREAHPQVSLFSTMGSAAAARQA
TFEAYAVQHQANLLATRARREAELRDQHQTQLTAAREVQQAAARALAEAQ
ARQAAGTRARQVAAAEARAEQGGTPLGGVSASYDSVNAAAATPAAAAPAA
AAPTAAAAPAAAAAAATPSGAAAPRGPRMRYTVAGFTNDSIIPRGRSFAT
AAEAAAFSAGHASYAAAAAAAAAAAPEPASSNSSMTPTNRPRTFATAAAG
AANAAAAARAEARSAAAAAAAAAAAATTASEQLRARMRADDRSRRLGGDE
EEERSRQRERQQDHARLMREMDAVNAAAFTESFAYMTRETERLRAQQRTA
DRSRRLGEGEEEEERSQQRERQQEEEARRRDGVSEVAAAAVAAAELPSSR
MDLLARLAGLEEPMPARRTSTAVSLNSSASPPPSISATARVTRSVTRNTR
WSSASSAPASATATEVVAAAAIPTRVSPRRTRTMSVALERWVASGQGGGG
GPSA*
back to top

mRNA from alignment at E_fasciculatus_S2_contig7107:57..5020+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7107.15284.1 ID=mRNA_E_fasciculatus_S2_contig7107.15284.1|Name=mRNA_E_fasciculatus_S2_contig7107.15284.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4964bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7107:57..5020+ (Ectocarpus fasciculatus EfasUO2)
ATGAACAACGGTACACCTCCGGGGGGTGCCCCCAACAACAACAACAACAA
CAACAACAAGCGCCACCCCGCCCTGGCGCCCTCCTTGCCGAAGTCGCTCA
TCACCAAGAAGATTCCCGCGCCTCGGCCCGAAGGTATGTACGTGGCGTTC
GACGCTTTTTTGTAGACGCTGCCTGTTGTCGGCTCAACAGTACTGCTTGT
AGCACGTTGTTTGATGTGTACACCCACCTGCCTCCGTGGTGTTCCATGTT
TTGTGCCTCCACGGTACGGTATCCCGTGTGTGTGCCTCCGCGTCCCACCC
GTATTTGGGCCGATCGGGAGGTCGTCGAATGTACGCATACCAAGAATCAT
GCAAAAAAAATAGGAAATGCTAAATAGTAGATTTAGCGGCAACGCACTGC
TGCTGTGTCTGTTCCGTGCTGGATTTCGTGCTCGTTGTTCCCGGGTTCAA
AAGCAGGGATGGGTTGGTGTTAACACATGTGGTGACAAACTTGTCTGCGA
ATTTCATCGTCTTGTGCTCGTGTCCGGGGATGTACACAGGACAGATGCGT
TTATTGTCGTTGTTGTTCCCCCGATAATGTTTGAAGAGGAGGTGGTTATG
GTGATCCACCCCCTTGTGTGCTGGCGGTCTTCCACACCCACCCCACCACG
TCTTGTAAATATCACAACCTCGGTGATTGGCATCTCTCTGCCGCCACAGA
CGTTGCGAGGGCTAAGAAGGCCGCGGTGGAGGACACGAAAAAGGAAGAGG
TCTGCACCATCTGCCTAGACGCCCTCCCTGACATCGGAAGAGGCATTCTC
GCTTGCGTGAGTCGAGTCATCCATCTCTCGAATCTCTTGCGTTCCTCTGC
ATCTGTGATTTTCTCTTTCTTTGCTCGGTGTTTTTTTTTTTTTTTTCGTG
TGCGCTTTCGGGTGTCAGCTCTCGCTTGGTGTCGCTGGTAGCTGTTGTGC
TTTCGAGGAATGCCAGAGAGAACCAAGAGTGCTTGATTTCCGGAACTATA
AATGTGTTAGATGGGGAGTGTTTATGTAATTTAGTAATTGGGTTTTGTTT
GGGGAACATAACCAAGCTACAGTACGACTGAACGAATCAATAGAGCAGCG
TGAGAAACGAAGCATGTCTGGTAGAAAAAAACGGCAAGAGAACGGAGCCA
GGCGAACAAAACAAAAATCGGGATCAGGTCGTGAGCGTAGAGAGAAAGAG
TGTGAAGCCTCGTCTCCACAGACCATCCCGCGCTCTCTTAGTTATCACTT
ATCGTTACTGCTGACTATCAAATTTCTCTCTTCTGTTTTTTTTTTTTTGT
TATCGAAGGCCAAGATGTTCCTTCTCCTCTCATACACCACCACCACCCGT
CATCACCGACACTATATCGCCTGAGAAGTTGTAACTTGCTGCGCATCACC
GCCTTGAATTTAACCGTGCTTCTCCGCCGATGCCTCTTTTTGTTTTGGGG
GGATGATTTTTTCGCGCGCACTCCTGCTGCTTTATCCAGGGACACACCTT
CTGCTTCGGCTGCATCCACATTTGGTCCCAGAGTAAGGAGCGCGCGCTCT
GCCCAACATGCCGCGTCCCCTTCAACAAGATCAAGAAGACTCTGACGCCG
AAGGACATGGCGAAGGAGAAGCTTCGCAACGAGGTGTGCGCGAATTGCAA
GAGGAGAAGACTCAACCCCACGACCCTCGTTAGCTAGTCCTGGGGTCGGC
TACATCCGTTCCTGCCCTGGCTTAGTCGCCCTGCGGCGGATTGTCATCTG
TCTGACGCATCGCTCTGCTGTGGGGTACTCTCTGTCTGCTTATCGGCCGC
AACTGGTACATCTAGATTCCGCATATCAATTCCTGCGATTCATTTCTAGA
ACTCTCTTCCGCTACGATTACACCTCTGTCCCTGTACGTGTGCTTGTGCG
TTCTTTTGTTTTTTTGCAGCGCGACAAGAAGAGGAAGAACGCCACCAAGA
AGCAGCGCGACAGGATGAGGCGTCGCCGCGCGAGCGTGAAGCAACCAGTG
AGTTCGAGCGACCGCTTTTCTTTTTTTTCTCTTTATTACAGAGAGCACAT
CCTCTTGCACAGATAAAGAACTTCCTGTACCTCGGCATGTCTGTTGTAGT
TGTTTGTGCCACGTTCCTCTACGATAGTGATGATCGGGTCGTCTTGTGGA
CTAAGTCGACCTTGCTAAGTATATTGGGGAAGGCGCCGCATGTCTTTGTA
AGTTGACATGGCGGGGCACAGCGAATGTTATGTTGTTGTACGTGTCGATC
TTAATGTCCGTGATGACACCTTGTCCAGCAGGGTATTGTGTTCTTCCGCT
CTGTTGGAGGGAAAATAAGCACTCTTAACAAGAAAAAAAAGAACCACGTC
CCCTTGCGACAAGTTCATCCAAAGTTACCGTGCTCGATGTTGTTGAAGAA
CATAATTGTAGGTCCAGTGTCGAGCAGATTTCCCTCACCCGACACGTATG
TGTACTGTCTAAAACAAGAAGCCCGGGAAGAGAGAGTCCCTCTCCTCACA
ACACAATAAGAGGGACTGACTGCCATTGGTGTGCAATGAGTTTTTTTTTT
CCTCTTTTTTTCCCCTAGTATGAGATAAGCCTGGTCCGGTGAGAACCGGG
CGTGCTCCCTCCCTGCTTGTTAGCGATGCGAGGTCAATGGTCTAACGACT
ACGGCATGCAAGACTATGAGTACACCCTCCCCCCTTCTCCCGAGTGTGGC
GTGGCTCTTTTTCGGAACATTTTTCTGGTTTTTTTTTTTTTTCCTTCTCG
TGTTCCCCTGCGTGTTGCGTAATCTTCCTTTTTCTCCGTCTATGACCACG
ATCGCACTCCCGTCACCGTTTGTTGGTGTGCAATCAATGCCCGCGCATGC
ACGCACGTGTCAAACCATGAAGTGCGAGAAGGTGTTTGTGAAGGACGTAC
GCGTGCGCAAGCTGTCGCACAAGAAGAGGCTCGCTCAGGCTGCCCGCGAA
GCTCACCCGCAGGTGAGCCTATTTAGCGTCGAGACTGCTACTGCATGCAC
TAAAACAAGCACACGAAGCCTCATGTCGAGCAGTCAAGATTGCCTGAATA
TGGAAGAATAACTACGAGTCGGGATCAGCTTGCTCCCAGTAGCGATACAC
CTGGTAGCCAAGATATGTGTGCTGGTATGTTGTTGTATAGTTGTTATTTA
CCCTTCCGGGACGCGTTATTGGTCAGATTCCTCCACACTATTCAGCCTGT
CTCCAAAGAATTGTATCCCAGGCCGATATCTTCTGACCTCGCGAAATTTT
TGCGATTAGACGTGAGTTCGAATCTCGTACTTTTTTTTTTTTTTCTCGCA
TCTTGCTGCCGCCCGAGCAAGTACGCGTCGCGCACATCCGAACGCGCGAA
GTTGCGCTATGTAGACCGCGTACTCTAACGTCTGCATAGCGTCATCAGTC
ATGGCGAAATAAAATTGACCCTCCACAAGCATGTGACCCGCATCTGATCG
AAAACGTTCAACTGTTTGTTTTCTCCGGCACCGATGCTCGCTACGCTACG
CTACTTCTCACCGGGGGCGCTACTTCGATGACGACGACACAACGTCCTGC
CGGCCGCGACACACAGACCATGGGAAGCGCTGCGGCAGCCCGCCAGGCGA
CCTTCGAGGCTTACGCCGTCCAGCACCAGGCCAACCTCCTCGCTACCCGC
GCCCGGCGGGAAGCGGAGCTGCGGGACCAGCACCAGACCCAACTGACGGC
CGCCCGCGAGGTGCAGCAGGCGGCGGCGCGGGCGCTGGCGGAGGCCCAGG
CCAGGCAGGCGGCGGGGACCCGGGCCCGCCAAGTCGCGGCGGCGGAGGCC
AGAGCCGAGCAGGGGGGTACGCCCCTGGGCGGCGTTTCGGCGTCGTATGA
TTCCGTGAACGCTGCTGCCGCCACCCCCGCCGCCGCAGCCCCCGCTGCCG
CCGCCCCCACTGCCGCCGCCGCCCCCGCTGCCGCTGCTGCCGCTGCTACC
CCTTCGGGTGCTGCGGCTCCTAGGGGTCCTAGGATGAGGTACACCGTTGC
GGGGTTCACGAACGACAGCATAATACCTCGGGGGCGATCGTTCGCCACTG
CCGCGGAGGCGGCGGCCTTTTCTGCCGGCCACGCCTCGTACGCTGCCGCC
GCCGCTGCCGCCGCCGCCGCTGCTCCTGAGCCCGCGAGCTCCAATTCTAG
CATGACGCCCACCAACAGGCCTCGAACATTCGCCACTGCCGCCGCGGGCG
CCGCTAACGCCGCTGCCGCCGCGCGTGCTGAGGCCAGGTCTGCAGCCGCC
GCCGCCGCTGCTGCCGCCGCCGCTGCCACCACTGCTTCGGAGCAGCTTCG
CGCGCGGATGAGGGCGGACGACCGCTCCCGCCGGCTGGGGGGGGACGAGG
AGGAGGAGAGGTCGCGGCAGCGCGAGCGGCAGCAGGATCATGCCCGCCTC
ATGCGGGAAATGGACGCCGTGAACGCTGCCGCCTTCACTGAGAGTTTCGC
TTATATGACCCGGGAAACGGAGCGGCTTCGGGCGCAGCAGCGGACGGCCG
ACCGCTCTCGCCGGCTGGGGGAGGGCGAGGAGGAGGAGGAGAGGTCCCAG
CAACGCGAGCGCCAGCAGGAGGAGGAGGCCCGCCGCCGCGACGGTGTCAG
CGAGGTGGCGGCGGCGGCGGTGGCGGCGGCGGAACTGCCTTCTTCCCGTA
TGGACCTGCTGGCGCGGCTGGCAGGGTTGGAGGAGCCCATGCCCGCCCGG
CGCACCTCCACCGCCGTGTCTCTGAACTCGTCGGCATCGCCACCGCCTTC
GATCTCGGCCACGGCTAGGGTAACGAGGTCGGTGACGAGGAACACGAGGT
GGTCGTCGGCGTCGTCCGCGCCGGCGTCCGCCACGGCGACTGAGGTCGTT
GCTGCCGCCGCCATCCCCACGAGGGTTTCTCCCCGTCGCACGAGGACGAT
GTCGGTGGCGTTGGAGCGGTGGGTAGCGAGCGGCCAGGGCGGTGGTGGTG
GGCCGTCTGCTTAG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7107:57..5020+

>mRNA_E_fasciculatus_S2_contig7107.15284.1 ID=mRNA_E_fasciculatus_S2_contig7107.15284.1|Name=mRNA_E_fasciculatus_S2_contig7107.15284.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1965bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7107:57..5020+ (Ectocarpus fasciculatus EfasUO2)
ATGAACAACGGTACACCTCCGGGGGGTGCCCCCAACAACAACAACAACAA
CAACAACAAGCGCCACCCCGCCCTGGCGCCCTCCTTGCCGAAGTCGCTCA
TCACCAAGAAGATTCCCGCGCCTCGGCCCGAAGACGTTGCGAGGGCTAAG
AAGGCCGCGGTGGAGGACACGAAAAAGGAAGAGGTCTGCACCATCTGCCT
AGACGCCCTCCCTGACATCGGAAGAGGCATTCTCGCTTGCGGACACACCT
TCTGCTTCGGCTGCATCCACATTTGGTCCCAGAGTAAGGAGCGCGCGCTC
TGCCCAACATGCCGCGTCCCCTTCAACAAGATCAAGAAGACTCTGACGCC
GAAGGACATGGCGAAGGAGAAGCTTCGCAACGAGCGCGACAAGAAGAGGA
AGAACGCCACCAAGAAGCAGCGCGACAGGATGAGGCGTCGCCGCGCGAGC
GTGAAGCAACCATGCGAGAAGGTGTTTGTGAAGGACGTACGCGTGCGCAA
GCTGTCGCACAAGAAGAGGCTCGCTCAGGCTGCCCGCGAAGCTCACCCGC
AGGTGAGCCTATTTAGCACCATGGGAAGCGCTGCGGCAGCCCGCCAGGCG
ACCTTCGAGGCTTACGCCGTCCAGCACCAGGCCAACCTCCTCGCTACCCG
CGCCCGGCGGGAAGCGGAGCTGCGGGACCAGCACCAGACCCAACTGACGG
CCGCCCGCGAGGTGCAGCAGGCGGCGGCGCGGGCGCTGGCGGAGGCCCAG
GCCAGGCAGGCGGCGGGGACCCGGGCCCGCCAAGTCGCGGCGGCGGAGGC
CAGAGCCGAGCAGGGGGGTACGCCCCTGGGCGGCGTTTCGGCGTCGTATG
ATTCCGTGAACGCTGCTGCCGCCACCCCCGCCGCCGCAGCCCCCGCTGCC
GCCGCCCCCACTGCCGCCGCCGCCCCCGCTGCCGCTGCTGCCGCTGCTAC
CCCTTCGGGTGCTGCGGCTCCTAGGGGTCCTAGGATGAGGTACACCGTTG
CGGGGTTCACGAACGACAGCATAATACCTCGGGGGCGATCGTTCGCCACT
GCCGCGGAGGCGGCGGCCTTTTCTGCCGGCCACGCCTCGTACGCTGCCGC
CGCCGCTGCCGCCGCCGCCGCTGCTCCTGAGCCCGCGAGCTCCAATTCTA
GCATGACGCCCACCAACAGGCCTCGAACATTCGCCACTGCCGCCGCGGGC
GCCGCTAACGCCGCTGCCGCCGCGCGTGCTGAGGCCAGGTCTGCAGCCGC
CGCCGCCGCTGCTGCCGCCGCCGCTGCCACCACTGCTTCGGAGCAGCTTC
GCGCGCGGATGAGGGCGGACGACCGCTCCCGCCGGCTGGGGGGGGACGAG
GAGGAGGAGAGGTCGCGGCAGCGCGAGCGGCAGCAGGATCATGCCCGCCT
CATGCGGGAAATGGACGCCGTGAACGCTGCCGCCTTCACTGAGAGTTTCG
CTTATATGACCCGGGAAACGGAGCGGCTTCGGGCGCAGCAGCGGACGGCC
GACCGCTCTCGCCGGCTGGGGGAGGGCGAGGAGGAGGAGGAGAGGTCCCA
GCAACGCGAGCGCCAGCAGGAGGAGGAGGCCCGCCGCCGCGACGGTGTCA
GCGAGGTGGCGGCGGCGGCGGTGGCGGCGGCGGAACTGCCTTCTTCCCGT
ATGGACCTGCTGGCGCGGCTGGCAGGGTTGGAGGAGCCCATGCCCGCCCG
GCGCACCTCCACCGCCGTGTCTCTGAACTCGTCGGCATCGCCACCGCCTT
CGATCTCGGCCACGGCTAGGGTAACGAGGTCGGTGACGAGGAACACGAGG
TGGTCGTCGGCGTCGTCCGCGCCGGCGTCCGCCACGGCGACTGAGGTCGT
TGCTGCCGCCGCCATCCCCACGAGGGTTTCTCCCCGTCGCACGAGGACGA
TGTCGGTGGCGTTGGAGCGGTGGGTAGCGAGCGGCCAGGGCGGTGGTGGT
GGGCCGTCTGCTTAG
back to top