mRNA_E_fasciculatus_S2_contig7104.15281.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7104.15281.1
Unique NamemRNA_E_fasciculatus_S2_contig7104.15281.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7104.15281.1 vs.
Match: Myb-like (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI88_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 6.490e-57
Identity = 130/135 (96.30%), Postives = 131/135 (97.04%), Query Frame = 1 
Query:    1 AGHGIQPQAPLPVSATQQQLQQGASVGAXXXXXXXXXXXXXXAPAGIALAAGGVAGAAPTSPAQNLAANLSSQVRALLSRAPNMPGAAGGSTNQVLEALRLHPQLTAKIQATIHRTDTTDAQKVEALASMLSAVR 405
            AGHGIQPQAPLPVSA QQ LQQG SVG XXXXXXXXXXXXXXAPAG+ALAAGGVAGAAPTSPAQNLAANLSSQVRALLSRAPNMPGAAGGSTNQVLEALRLHPQLTAKIQATIHRTDTTDAQKVEALASMLSAVR
Sbjct:  850 AGHGIQPQAPLPVSAGQQPLQQGGSVGXXXXXXXXXXXXXXXAPAGVALAAGGVAGAAPTSPAQNLAANLSSQVRALLSRAPNMPGAAGGSTNQVLEALRLHPQLTAKIQATIHRTDTTDAQKVEALASMLSAVR 984
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7104.15281.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Myb-like6.490e-5796.30domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7104contigE_fasciculatus_S2_contig7104:90..1431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size422
Hectar predicted targeting categoryother localisation
Exons3
Cds size420
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842372.6092756-CDS-E_fasciculatus_S2_contig7104:89..3131696842372.6092756-CDS-E_fasciculatus_S2_contig7104:89..313Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7104 90..313 +
1696842372.6213083-CDS-E_fasciculatus_S2_contig7104:902..10471696842372.6213083-CDS-E_fasciculatus_S2_contig7104:902..1047Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7104 903..1047 +
1696842372.6323724-CDS-E_fasciculatus_S2_contig7104:1378..14291696842372.6323724-CDS-E_fasciculatus_S2_contig7104:1378..1429Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7104 1379..1429 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7104.15281.1prot_E_fasciculatus_S2_contig7104.15281.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7104 90..1429 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7104.15281.1

>prot_E_fasciculatus_S2_contig7104.15281.1 ID=prot_E_fasciculatus_S2_contig7104.15281.1|Name=mRNA_E_fasciculatus_S2_contig7104.15281.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=140bp
AGHGIQPQAPLPVSATQQQLQQGASVGAAAVSSPPAAVVGGGAPAGIALA
AGGVAGAAPTSPAQNLAANLSSQVRALLSRAPNMPGAAGGSTNQVLEALR
LHPQLTAKIQATIHRTDTTDAQKVEALASMLSAVRSAAAA
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mRNA from alignment at E_fasciculatus_S2_contig7104:90..1431+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7104.15281.1 ID=mRNA_E_fasciculatus_S2_contig7104.15281.1|Name=mRNA_E_fasciculatus_S2_contig7104.15281.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1342bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7104:90..1431+ (Ectocarpus fasciculatus EfasUO2)
GCAGGCCACGGGATCCAGCCTCAGGCCCCCCTCCCAGTCTCGGCGACCCA
ACAGCAGCTTCAGCAGGGGGCCTCCGTCGGCGCCGCCGCGGTTTCGTCAC
CCCCTGCGGCCGTTGTGGGCGGCGGGGCCCCCGCGGGAATCGCCCTGGCG
GCGGGTGGGGTGGCGGGGGCGGCGCCGACGTCTCCGGCGCAGAACCTGGC
GGCTAATCTTTCATCCCAAGTCCGGTGAGCGCAGCAGGTTGGACGTCGGC
TTCCTTCTTCCCCTCCCCTTTTGACGCGATGGATCTCCTGCTAGCGTTGT
TTTGGCTGTTGAAGGATGCTATGCGAGCATTGTCAGCGTTGGTCCACGGT
CATGGATGAGGGTATTTTTTGTTGTGTTTCGCCCCCAAGGTCAAGACGAT
TGCTGTGGTAGGAAGATAGACATGGCCACACGTACCTGTGGCCATGGAAA
GTGTCCGCGTGAGTTGGACCGTTATGTACTGGGCAAAAGGTGGGAACGGT
TGGCCAAGTGATAACAACGACAACCACAGCAACCACAATAGGAACAATTC
AAATTCTATCTATCGGAGCGTTCATCCATTCTCCACCCAAGCATGACGCA
TGGGTTTCAAAATCGAGGCGCTGGTAAAACGCGCGTTTTTGTTCTCCTTC
CTTCGCTCTCATACTCTCCTTCCTTTCGCTCTCGTACTCATAATCTCATC
ATCGTTGTCACAACAACCCACGACCTTGTCTCCCCCCACTACCCCCCTTA
CATTGCAACCTCGGTTCCCCCTACACCCCTACCCCTACCCCTACCCCTAC
CCCTACCCGACAGGGCGCTGTTGTCACGTGCTCCGAATATGCCCGGGGCC
GCGGGCGGATCTACAAACCAGGTCCTAGAGGCTCTGCGGCTGCACCCCCA
GCTTACGGCGAAGATCCAGGCAACGATTCATCGCACCGACACCACCGACG
CTCAGAAGGTAAGGAAGGAAGGTTAGCGTTGTACGGGTTTCCGTATTATA
CGGGTTTCCGCATCATTTTGGGAGGCGGTTGATGGTTTTGGAGTTGTTTG
TTGAAGGTGAGAGGAGCGAAGATAGATCACCGTGTTTACTAAAGCGGTGG
TGCGAGATGACCCGTCTGATTTTAGCCCCGCCATGTATGCCGCATACAGA
GTGTTGAACAAGAGGTGTGCCGTCATGCCCTTTGGGACTGACTCACTGTG
ACCGAGCGTTCCAAATTCATCATCTTCTGCTTGCTTTTGCTTTTCAACCG
CCGTCATATTGTCCTCGCCCTCCCGATCTCCGTGCCCAGGTGGAAGCACT
GGCGAGCATGCTCAGCGCCGTCCGATCCGCGGCGGCGGCGGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7104:90..1431+

>mRNA_E_fasciculatus_S2_contig7104.15281.1 ID=mRNA_E_fasciculatus_S2_contig7104.15281.1|Name=mRNA_E_fasciculatus_S2_contig7104.15281.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=420bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7104:90..1431+ (Ectocarpus fasciculatus EfasUO2)
GCAGGCCACGGGATCCAGCCTCAGGCCCCCCTCCCAGTCTCGGCGACCCA
ACAGCAGCTTCAGCAGGGGGCCTCCGTCGGCGCCGCCGCGGTTTCGTCAC
CCCCTGCGGCCGTTGTGGGCGGCGGGGCCCCCGCGGGAATCGCCCTGGCG
GCGGGTGGGGTGGCGGGGGCGGCGCCGACGTCTCCGGCGCAGAACCTGGC
GGCTAATCTTTCATCCCAAGTCCGGGCGCTGTTGTCACGTGCTCCGAATA
TGCCCGGGGCCGCGGGCGGATCTACAAACCAGGTCCTAGAGGCTCTGCGG
CTGCACCCCCAGCTTACGGCGAAGATCCAGGCAACGATTCATCGCACCGA
CACCACCGACGCTCAGAAGGTGGAAGCACTGGCGAGCATGCTCAGCGCCG
TCCGATCCGCGGCGGCGGCG
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