mRNA_E_fasciculatus_S2_contig7103.15280.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7103.15280.1
Unique NamemRNA_E_fasciculatus_S2_contig7103.15280.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7103.15280.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G9_ECTSI)

HSP 1 Score: 393 bits (1010), Expect = 8.580e-134
Identity = 201/242 (83.06%), Postives = 214/242 (88.43%), Query Frame = 1 
Query:  316 MVWMNKTETEFALVKNAKSSVRNFIGKKIVHPVAKLATVTLGVSASDIYSSRDGAGGRPLNDPWRLSNHVPDPRLTIRLKFSTDTIDIEGCTQDESNALFAILSPYASSMPNPTKGAIREYAGTGGRLSPRPAVAAGRGSGGGRPSRDEDNDVLDESYKANPIPVQNPAVLNGGALRKQRSNLRDMMQQGSEYDKSREVFLADDDLDNGVDAAAVALKPYTLAEVSGAVPQTPTCYVHREEE 1041
            MVWMNKTETEFALVKNAKSSVRNFIGKKIVHPVA L TVTLGV  S+IYSSRD AGGR  + PWRLSNHVPDPRLTIRL+FSTDT+D EGCTQDESNALFAILSPYA S  +P KGAI  YA    RLSPRPA AA RG+ GGRP+ DED+D L+ SYKANPIPVQNPA+ NGG  R+QRSNLRDMMQQGSEYDKSREVFLADDDLDNGVDAAAVALKPYTLAEVSGAVPQTP+CYVHRE+E
Sbjct:    1 MVWMNKTETEFALVKNAKSSVRNFIGKKIVHPVANLLTVTLGVPPSEIYSSRDSAGGRSSSGPWRLSNHVPDPRLTIRLRFSTDTVDFEGCTQDESNALFAILSPYARS--HPAKGAISAYASAPRRLSPRPAAAAVRGNSGGRPALDEDSDPLEASYKANPIPVQNPAIPNGGVPRRQRSNLRDMMQQGSEYDKSREVFLADDDLDNGVDAAAVALKPYTLAEVSGAVPQTPSCYVHREDE 240
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7103.15280.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized8.580e-13483.06protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7103contigE_fasciculatus_S2_contig7103:301..6401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size1113
Hectar predicted targeting categoryother localisation
Exons7
Cds size1113
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7103.15280.1prot_E_fasciculatus_S2_contig7103.15280.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7103 301..6401 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842372.5069106-CDS-E_fasciculatus_S2_contig7103:300..5371696842372.5069106-CDS-E_fasciculatus_S2_contig7103:300..537Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7103 301..537 -
1696842372.5175035-CDS-E_fasciculatus_S2_contig7103:1682..17941696842372.5175035-CDS-E_fasciculatus_S2_contig7103:1682..1794Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7103 1683..1794 -
1696842372.528461-CDS-E_fasciculatus_S2_contig7103:2330..24341696842372.528461-CDS-E_fasciculatus_S2_contig7103:2330..2434Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7103 2331..2434 -
1696842372.545177-CDS-E_fasciculatus_S2_contig7103:3033..31391696842372.545177-CDS-E_fasciculatus_S2_contig7103:3033..3139Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7103 3034..3139 -
1696842372.5566425-CDS-E_fasciculatus_S2_contig7103:3987..41121696842372.5566425-CDS-E_fasciculatus_S2_contig7103:3987..4112Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7103 3988..4112 -
1696842372.5665524-CDS-E_fasciculatus_S2_contig7103:4630..47861696842372.5665524-CDS-E_fasciculatus_S2_contig7103:4630..4786Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7103 4631..4786 -
1696842372.576995-CDS-E_fasciculatus_S2_contig7103:6128..64011696842372.576995-CDS-E_fasciculatus_S2_contig7103:6128..6401Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7103 6129..6401 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7103.15280.1

>prot_E_fasciculatus_S2_contig7103.15280.1 ID=prot_E_fasciculatus_S2_contig7103.15280.1|Name=mRNA_E_fasciculatus_S2_contig7103.15280.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=371bp
MTARRPPPSYEETLGRGEDALNASPFNSTPGRPNGAASPAPAAAGDYRSN
RSTAHHGGERRRSGGGGGGGGGVSASLISEIQHSLHGTGFKVVYYPPQRA
RPQERMVWMNKTETEFALVKNAKSSVRNFIGKKIVHPVAKLATVTLGVSA
SDIYSSRDGAGGRPLNDPWRLSNHVPDPRLTIRLKFSTDTIDIEGCTQDE
SNALFAILSPYASSMPNPTKGAIREYAGTGGRLSPRPAVAAGRGSGGGRP
SRDEDNDVLDESYKANPIPVQNPAVLNGGALRKQRSNLRDMMQQGSEYDK
SREVFLADDDLDNGVDAAAVALKPYTLAEVSGAVPQTPTCYVHREEETTR
WGGDGGGGGGGGGGGGGEVAV
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mRNA from alignment at E_fasciculatus_S2_contig7103:301..6401-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7103.15280.1 ID=mRNA_E_fasciculatus_S2_contig7103.15280.1|Name=mRNA_E_fasciculatus_S2_contig7103.15280.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=6101bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7103:301..6401- (Ectocarpus fasciculatus EfasUO2)
ATGACGGCTCGCAGGCCACCCCCTTCCTACGAGGAGACGCTCGGGCGTGG
GGAGGATGCACTCAACGCATCGCCTTTCAATTCCACGCCCGGACGCCCAA
ATGGTGCCGCGTCGCCGGCGCCCGCGGCGGCGGGGGACTACAGGTCCAAC
AGGAGTACCGCGCATCACGGAGGGGAGAGGAGGAGGAGCGGCGGGGGCGG
TGGCGGAGGCGGCGGCGTGTCTGCATCGTTGATCTCGGAGATACAGCACA
GCCTCCACGGGACGGGGTTCAAGGTGTGTGGCTTTAGCAAAGCAAGCGGT
ATGTTGCAGCGGTGTTTAACTTCCGGTCGTGTCCTCCTATCAAGCAAAGC
ATACCACCGGGGAGGATGCTTGTCTTCTCTTGGCATTGTTTATTTGGGAG
GACAACACATGCATTTCGCGACAAACGCCAGTGTTTTCCCATACTATTCT
CCGCCTGACCTCACACAGAGTAGTGGTTCGTAGCTGCAAATGTTTCAGAG
CCGTTCGCGGACCAATGCAACACACCAATTTCCTCGCATGCACGAGAAAA
TCACGGCGGGGTCGCGCAGGTTTTTGTGTCCGTCAGCGCGGCGGAACGGT
CCGAAAGCGAGGGTCGAGGGAGACCGCAGAACATCACCATATTTCTCTCA
TCCAACCCTTTCCCCTTTTCATGGCGGGCATCAACAAGAGCGCGGGTGGC
TGCTTTGCGGTGTCATGCTGTCGGCGTTGTTGTTGAGCCGACAGCGGTGA
AGTACGTGTGTCACAGCAGCATCTTGATTGATCGCGGGTCGATGGACCGA
TGCATATGCATACCCGACCACTTGGAAACATGTCTACACGGACGGACATC
TCTTCGCAGTCCCTCGCAGCCTAACCTCGCAGCCTTTACATTGCTCCACC
GGGAACAACCAACCAAAAGACAGCAGTAGTCACGCTTGCGGCAAGAGGAG
GAGCCTGCTGCTCTCTGGTGTTCATGAACACGAACAAGGGAAGGGCGATT
TTTTGGCGGTTTGCTCTTCCCCAATAAGAAGCGCTGGTACATAGCTTGAA
ATATACAATAAAAAGGGTAGTCTGTGATAATGTATTTTATTTTTCCCTAT
TAAAAATTCCACAAAATTGTAACTAGCCACAACACCATTTCTGGTGCTGT
TCGTACCCGTGCGGAGCTGTATTCTTGCATCGTTGTGGGAGGTCTCACGC
AATAACCCCGTCCACTTAGTTGCACGGCGGTGCTAGGTGGGTTGTCTTGG
TCACCCGGGCCGAGGCAGTGGAGCTGTGTACAGCATTCACGGCTACACTT
CACCCGCTCTGATTCTCGAACTGGATGCACGGGATCAAAAGGTCAAACGC
TGGCGATTGCAGTGTACGAACATACTCATGACCTAAAACCTCTCTTGTCC
TCATGCCCTATCCCCCATGCTCTTGGCACAGCAACCGCAAGGATGATGAC
CAGCTTGGTAGATACATCCATGTCAAACGCAGCCTGGGCCGGCGAAAACC
CGGCATATCGCTCCGTCCCGGTGTTGTCGGGATGCGAGGTCACAGGTCCA
ACGACTGCGGCATGCATGTACCTGAGTACTATCTCCCCTCTTCGTATTTT
TTCGGTCATGTATAGGTTGTTTACTATCCGCCGCAGAGGGCCAGGCCGCA
GGAGAGGATGGTCTGGATGAACAAGACGGAGACGGAGTTTGCCTTGGTCA
AGAACGCCAAGAGTTCGGTCAGAAACTTCATCGGGAAGAAGATCGTCCAC
CCGGTGGCCAAGCTCGCGACGGTGTGTAGCAGCACACAGCAGCAAATGGG
TCTCGTAGCTGTTTATCCTAGCCACAGTCGCTGTCGAACCTCTCGCCCGT
ATGATGTGTAGTAGCACACACAATTGCAGTGGGTCTTGGAGTCGTTGCGT
TGGTTGTGAAAAGCTGTTTATCCTAGCCACAGTAGTCGCTGTCCAACCTC
TCGCCCGTACGATGTGTATTAGCACACACAACAGCAGTGGCTCGTGTCGT
CGATGCGTTGGTTGTAGCTGTTTATCCTAGCAATGCCAGAATAGTATGCC
ATGGTCGCTGTCCAACCTCTGAGGTGCGTGTAACAGCACCCAGCAGTGGT
CCTTCAATCGATGCGTTGGTTTGTCTAGCATGGAAGCGCTTTCAGTGAAA
TGCAGCTTCGTCGCCTTCCTCCAAGCTTTGTCTCGCGGTGTACATGCTGC
GAACGTGCTTCAGCGCACGGAGCAGCATTGTTAGGCGTGGCAATATATCG
ACTGCCGTGTCCTTCTTTTCTTGATGTGTGCCCTCTCAGGTAACGCTTGG
GGTCTCCGCTTCGGACATCTATTCGTCGAGGGATGGCGCCGGCGGTCGCC
CGCTGAATGACCCGTGGCGGCTCAGCAACCACGTGCCAGACCCGCGGCTG
ACCATACGCTTGAAGTGAGAGGGGCTTGCGTTGCTCGGGTTGAGCCGGTT
GGACCGCCTTCGCTAGGATGTTTTTGTCATTTGTCTATGAATTTCAGAGG
GGGGCTCCGTATCCCTAGCCCTAACCTCCTACCAAAACCAAGCTTGAATT
CCTGGCGAAGGGTACTGGCCAGGTTTATTGGTGATGGTGCTAGCTTATTT
TTCGGGGGGCGGCGTGCTCATGTTTTGCATGCCTTAGTTGTTAATAGTGC
CATTGATCACTCGTCCTCGAGAGGATGCAGGGATAGGCGGTGGACGGCAA
AGACGGTGGCATTGGGTACACGCTTCGGCTTGCCACCACCGTCCGTTGTA
CACAGCCTAGTGTGAGCACGCGCAAAGAGGGCTGAGGAGTGGGCGGGAGG
GCCTTGGCTCGAAAACTTGGAGGTCGGCCGGTGGATCTGGGTGAAAATGG
TTGATAGCTGTGTGTTGTTTTGAATCGTTGTGACGGCGCATGCGGCGCAA
CAACAGGGGCGGAAATTGTCGAGCGGAAATCGACCGAGCCGGGTGTTGGC
GTGCTAGGAGGAGAATATTTCCTTGTCATCCCCTCCTCCTCCCCCGCGGA
CCCTGATATGGGGAGCGCTGGCGCTAGCATGTACGGCAACGGCAACCTGA
ACAACATCACTAACGCCAACTCTAAACATTTTCTCTAGCATTAACCCCAA
CACTAACCGAAACACGAGCATTAAACTGTAACGCTAGCCCTATTTCTAAC
ACCAACACTATTGCTGACATTAGCTCTAGCCCTGACCCTAGTGATATGGC
TTAGCACCAACAGTAACCCTAACAACGCTAACGCTAACCCTATCCCACAA
CCCGTTTGAAAGGTTCTCGACGGACACGATCGACATCGAGGGCTGCACGC
AAGACGAGTCCAACGCTCTCTTCGCCATCCTGTCTCCCTACGCTTCATCG
ATGCCGAACCCTACGAAGGTGCGTACGTTTGCCCAGAATAACCGCCTTGG
TAGATTCGGCCGCGTTGACCTTGCGCGTGTCTGTGCGCGGTCGAGTTTTA
AACCGTATTGGGTGATTGTGATTTTTGGTATAGGCAGTAACAAGTGTCCA
AATATGCTGTAAGGCTGCACAGCAGTACTTGTGCCAAGGGAATCGGCCGG
CGTTTTCCCGGGCAAACACGTGACACTATTCAGAGTTATGAGTCAAGCCG
AATGAGCAAGTGTATTCCCTCTGTGTCACGCTTGCTTCGCTTTAGCTTTT
GTTGCAGAGCCACCACGGTAGGCGGGATTCTTTTGCGTCGCTTTTCTTGG
TCCTCTGTTTTCTGCACCCATCCCACGGCGATAAGCCACAAATCAGTTGT
TGGCTGTGCGCACCCACCGTGCCAGCCGGCACCATTTTGCGCCGCCTGCT
TGCTTGGCCGTCTGCACCCAACCCTACCGTGCTCACCGCCACCATTTTGG
GCCGCTTGCTTCGATTGCTGTTTTCTGCACCCAACCCCACCCTGCTAACC
GCCGCCATTTGATGCCGCTTGCTTGCTTGACCGCCCGTACCAAAACCCCC
CACGCCGGTCACCGAAGGGCGCGATAAGAGAGTATGCTGGTACTGGCGGG
AGATTATCTCCCCGACCGGCGGTGGCGGCTGGTCGTGGGAGCGGCGGTGG
TCGCCCCTCACGCGATGAGGAGTGAGTTGACTTTTTTTTTTGTTCCTTTG
TGATAGGGGACACGCAGAAAGCAACTATTAATTGAGAATTGTATACATAC
GGGGGGGTGAGATGCGAGGGAAGCTTTGCAGAGGGTCATGCAGGACCTCC
CCCCTGCCACCACTATTGAAGGGTTTCGCTGTGTTTTTAAGACAAACACA
AGATGTTTTATCCGGTACATTCTGCTGTAATTGCTTATCTTTTTGTATTT
TTGCATGACGGATGAAGGCTGTCCTAGACGTGTAGCCTAGCTGGACTGTC
CAATCAGGCGGAATCTACCATCCCGACTGACTGCTGTTACCGCTGCTATT
TCATTGCCATCACGAGCTTCTTCACAAGACAATGCCGTAGCTGCTGCTGC
TTCTCATTTCCCTCACGAGCTTCTTGAAGCACCAAAATCCACAGGGTTCC
CCCTCGATTCCCACGATGCGTTTGTATTTCGCGTATTTTTGCCGTTCACC
TGCTCTCTGCTTCCCGTGTGTCCTGTTTGGGTGTATGTGTGCGCTTGCGC
TGGACAGCAACGATGTGCTGGATGAATCGTACAAGGCCAATCCGATACCG
GTGCAGAACCCCGCCGTCCTTAACGGCGGCGCGCTGAGGAAGCAACGCTC
CAACCTCAGGGACATGATGGTGAGATTGATACCGTCGGGCCGCATGAGAT
ATTGCCAGTAGTACCTTTGCAGGGTTTTTCGTTCATGTAAACGTGTTGGA
TGAAGCATGAAATGGGGGAAGAAGGGGACTAGGGTTCGGGACATCGGGTC
TGCGCACCCCCTCCCTGTGCTGTTCTATTTCCTTATGAAAGGCTGTCCGA
TGTCACACCCCGTGGACCGATTTTCGAAGCTCGATAGATTACTCCACGAC
GAAGAGGATGCCGAAGTTAAACTATACACGTTTTCGGAAAGTTCTCGGAA
AGTTCTCGACGAGACAGGCGGTTCCAACGCCATTGCCATTTTCGGAACCG
CTACTGCCTTTCTTGCCGAGTATAATAGTCGAAATCGGTCCAGGGGGTGC
GGTATCTTACGCAACCTGCGGTTACAGATGCGTGCAAGATGCTCGTTGTC
TACCTGTTGTTGTTGCTGTTGTTGCTGTTGTTGCTGTTGTTGCTGTTGAA
GGTGGAGGCATTGGTTTGGTCAGGGAAATGATGGCGAGATAGATATTCAA
GTGCTTGCGATGCTCGTAGCGCTGACAGCACGCAAGCTGTCGTTACTGTT
AAATAGCGGTGGTGGCATGTTCCATATATATATATATATATTTTTTTTTC
TCCCATCATTGGACTCTGTCGTCTGCCCCTCTGGCCCCCATCCTTCACTT
CTACTAGCTAGACGGCCCGACCGGGGTCACATCATAGGAGGGGGGGGCTG
GACCGCTGGACCCCCTCTTGCGGTTCCTGCCTGTTAGGTTTTTATCGCGA
GCAGGGTTCAGCACTCCCCACCCTCGTCAACAATCAAGTCATATGTGCCT
GGCCGGTGTAAAATCGATCGGACCTGTGGTCCGCCGTTTTTTTTGTGTCG
TTCGCTCCGCTTATGTTCGTATCATTTCCGCCGCGTTTTTGTTCCTTTTC
GCTCCGCTTTATTTTCGTTTGGACGTTTGGACGCCCCCCCTGCCCCACCG
GTGCAAATCGACCGGACTTTAATTCCGCCGCGTTTTTGTGCCTTTTCGTT
CCGCTTATTTTCATGTGACGGGAAACCGCCCGGACCTTAATTCCGCCGCG
TTTTCCGTTCTCTTCCCCCTTTCTGTCGTCGTGCGAACCAACCAACCAAC
CAACCCTTGAGCAGCAACAAGGATCGGAGTACGACAAGTCCCGGGAGGTG
TTCCTGGCGGACGACGACCTCGACAACGGGGTCGACGCCGCCGCGGTGGC
GTTGAAACCCTACACCCTGGCGGAGGTCAGCGGGGCCGTGCCGCAGACGC
CGACGTGCTACGTGCACCGGGAAGAGGAGACGACTAGGTGGGGTGGCGAC
GGCGGCGGCGGCGGCGGCGGCGGCGGGGGGGGGGGGGGGGAGGTCGCGGT
G
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7103:301..6401-

>mRNA_E_fasciculatus_S2_contig7103.15280.1 ID=mRNA_E_fasciculatus_S2_contig7103.15280.1|Name=mRNA_E_fasciculatus_S2_contig7103.15280.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1113bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7103:301..6401- (Ectocarpus fasciculatus EfasUO2)
ATGACGGCTCGCAGGCCACCCCCTTCCTACGAGGAGACGCTCGGGCGTGG
GGAGGATGCACTCAACGCATCGCCTTTCAATTCCACGCCCGGACGCCCAA
ATGGTGCCGCGTCGCCGGCGCCCGCGGCGGCGGGGGACTACAGGTCCAAC
AGGAGTACCGCGCATCACGGAGGGGAGAGGAGGAGGAGCGGCGGGGGCGG
TGGCGGAGGCGGCGGCGTGTCTGCATCGTTGATCTCGGAGATACAGCACA
GCCTCCACGGGACGGGGTTCAAGGTTGTTTACTATCCGCCGCAGAGGGCC
AGGCCGCAGGAGAGGATGGTCTGGATGAACAAGACGGAGACGGAGTTTGC
CTTGGTCAAGAACGCCAAGAGTTCGGTCAGAAACTTCATCGGGAAGAAGA
TCGTCCACCCGGTGGCCAAGCTCGCGACGGTAACGCTTGGGGTCTCCGCT
TCGGACATCTATTCGTCGAGGGATGGCGCCGGCGGTCGCCCGCTGAATGA
CCCGTGGCGGCTCAGCAACCACGTGCCAGACCCGCGGCTGACCATACGCT
TGAAGTTCTCGACGGACACGATCGACATCGAGGGCTGCACGCAAGACGAG
TCCAACGCTCTCTTCGCCATCCTGTCTCCCTACGCTTCATCGATGCCGAA
CCCTACGAAGGGCGCGATAAGAGAGTATGCTGGTACTGGCGGGAGATTAT
CTCCCCGACCGGCGGTGGCGGCTGGTCGTGGGAGCGGCGGTGGTCGCCCC
TCACGCGATGAGGACAACGATGTGCTGGATGAATCGTACAAGGCCAATCC
GATACCGGTGCAGAACCCCGCCGTCCTTAACGGCGGCGCGCTGAGGAAGC
AACGCTCCAACCTCAGGGACATGATGCAACAAGGATCGGAGTACGACAAG
TCCCGGGAGGTGTTCCTGGCGGACGACGACCTCGACAACGGGGTCGACGC
CGCCGCGGTGGCGTTGAAACCCTACACCCTGGCGGAGGTCAGCGGGGCCG
TGCCGCAGACGCCGACGTGCTACGTGCACCGGGAAGAGGAGACGACTAGG
TGGGGTGGCGACGGCGGCGGCGGCGGCGGCGGCGGCGGGGGGGGGGGGGG
GGAGGTCGCGGTG
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