mRNA_E_fasciculatus_S2_contig7102.15279.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7102.15279.1
Unique NamemRNA_E_fasciculatus_S2_contig7102.15279.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7102.15279.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W3_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 2.010e-41
Identity = 112/169 (66.27%), Postives = 119/169 (70.41%), Query Frame = 2 
Query:  272 SSAFGYMFHLERPIDLLLKPAAGVTHPLAKTARESGKGKARASDGDNEPKRSGSKAGAAGASGGAKAFVSKATGAGGTAPLDTETSRKSKALKTIVKAAVKGSKLSXXXXXXXXXXXXXXXAVLPPPDVDEDTGTPSSRSSSRCSRAELKIPSRLAAAGGNVRHKHHAP 778
            +SAFG M HLERP D+ LKPA GV  PLAKTARESGK K RASDG+NEPKRSGSKAGAA  SGGA A VS AT +GGTA LDT+ SRKSKALKT  KA VKGS+LS    XXXXXXXXXXXAVL  PD D DT TPS+  S                  GNVR KHHAP
Sbjct:  114 TSAFGNMLHLERPFDIPLKPA-GVMSPLAKTARESGKRKPRASDGNNEPKRSGSKAGAAAESGGANASVSNATESGGTASLDTKRSRKSKALKTTAKAVVKGSRLSSCASXXXXXXXXXXXAVLASPDADGDTATPSTLVSGXXXXXXXXXX------XGNVRQKHHAP 275
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BLAST of mRNA_E_fasciculatus_S2_contig7102.15279.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK3_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 4.510e-34
Identity = 89/137 (64.96%), Postives = 96/137 (70.07%), Query Frame = 2 
Query:  272 SSAFGYMFHLERPIDLLLKPAAGVTHPLAKTARESGKGKARASDGDNEPKRSGSKAGAAGASGGAKAFVSKATGAGGTAPLDTETSRKSKALKTIVKAAVKGSKLSXXXXXXXXXXXXXXXAVLPPPDVDEDTGTPS 682
            +SAFG M  LE+P D+ LKPA GV +PLAKTARESGK K RASD +N PKRSGSKAGAA ASG A A   +ATG+GGTA LDTETSRK KALKT  KAAVKGSKLS               AVL   D D DTGTPS
Sbjct:   78 TSAFGDMLRLEQPFDIPLKPA-GVMNPLAKTARESGKRKPRASDDNNGPKRSGSKAGAAAASGXANASALQATGSGGTASLDTETSRKRKALKTTAKAAVKGSKLSSRASSVTSADNNSDDAVLASRDADGDTGTPS 213
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7102.15279.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.010e-4166.27protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.510e-3464.96protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7102contigE_fasciculatus_S2_contig7102:2869..4594 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size781
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_004470.1
Cds size492
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842372.4175432-UTR-E_fasciculatus_S2_contig7102:2868..29941696842372.4175432-UTR-E_fasciculatus_S2_contig7102:2868..2994Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7102 2869..2994 +
1696842372.4291253-UTR-E_fasciculatus_S2_contig7102:3198..33611696842372.4291253-UTR-E_fasciculatus_S2_contig7102:3198..3361Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7102 3199..3361 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842372.4446888-CDS-E_fasciculatus_S2_contig7102:3361..34361696842372.4446888-CDS-E_fasciculatus_S2_contig7102:3361..3436Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7102 3362..3436 +
1696842372.4558463-CDS-E_fasciculatus_S2_contig7102:3874..42521696842372.4558463-CDS-E_fasciculatus_S2_contig7102:3874..4252Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7102 3875..4252 +
1696842372.4656005-CDS-E_fasciculatus_S2_contig7102:4555..45941696842372.4656005-CDS-E_fasciculatus_S2_contig7102:4555..4594Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7102 4556..4594 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7102.15279.1prot_E_fasciculatus_S2_contig7102.15279.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7102 3362..4594 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7102.15279.1

>prot_E_fasciculatus_S2_contig7102.15279.1 ID=prot_E_fasciculatus_S2_contig7102.15279.1|Name=mRNA_E_fasciculatus_S2_contig7102.15279.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=164bp
MFHLERPIDLLLKPAAGVTHPLAKTARESGKGKARASDGDNEPKRSGSKA
GAAGASGGAKAFVSKATGAGGTAPLDTETSRKSKALKTIVKAAVKGSKLS
SSASSAASADDSSDDAVLPPPDVDEDTGTPSSRSSSRCSRAELKIPSRLA
AAGGNVRHKHHAP*
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mRNA from alignment at E_fasciculatus_S2_contig7102:2869..4594+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7102.15279.1 ID=mRNA_E_fasciculatus_S2_contig7102.15279.1|Name=mRNA_E_fasciculatus_S2_contig7102.15279.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1726bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7102:2869..4594+ (Ectocarpus fasciculatus EfasUO2)
AAGGCCGAGCCGGGGGCCGGAGGTTTGGACGCCTACCCCCGCGAGCCCAA
GCACTCCGATGGCAAGAATTTTCCCCCGACAATCTTGCCGCAGCACATGG
AAGACTCGACGAAGCCCAGCCCAGAGGTCCGACACAGTGCAACGGTCATC
TGTGCTTTCCCCGTCGATTCATCTTGCGTTTTGAGCGATCGTAGGTGCTT
CACGCCTGCAACATTAGCTGCAACTCCTGCTTCTTGGAGAACAGCATTCC
CTCGCCAGCTGAACCGTGTTTTTATGTATCATGTGGGTTGCTGCTTCCCC
CCTTTGGCCTCATGGGCGCTCTACCGCCAGGAACAAGCCGGCCAGGAGGT
ATGCGATAGGCTCGCGAGCGTCATGGATGAGATGCGCTCCGTGCTGGTGG
AAGTCTGCGAGAATGGGGGTGGCGGCTCTCTTACGACAGCCCTCGCCGCC
CGCGCCAATGTCGTGCTGAGTGCGGTCATCGGCATTCGGGTACATGTTTC
ACCTTGAGCGGCCCATCGATCTCCTGCTCAAACCCGCCGCTGGGGTGACG
CACCCTTTGGCCAAGACAGTGGGTCAGAGACGGGGCCTTTTCTTGTATAA
TATCCATTCTCTCGTGCGCGTCACGGCACGAGTTATCGTGCTCCGTCCCG
GAAGTGGTAGAGGATTGCTTTAGTTTCCCTTTGTCGTCGCTTGTTGTCAT
CCACAAAAGCCAAGTCCGTGCAGCCACTACGTAGTGTTCCGGACTACATT
TTTTCCCGGCCCATCGCGAGCCGGTCACGCCTCGCCCATCGTTGTTATTC
ATTTTTCCTTCGCTCAAGAACCACACCCGGAACATTCATAGGCCTCTTGT
ATCGGCACTTCGAACCGACTCCTTGTTTGGATCTGTGAATGAAGGAGCGA
TCGATACCGGTCGTTTAGACAAATACATCAAGGACGATTTGCAACACTTC
AATACATACGTCGACTGGAAAGTATTTATTGGAACTGCCGTGGGCGCTAT
TGTCAGGCACGGGAAAGCGGCAAGGGGAAGGCCAGAGCCAGCGACGGCGA
CAATGAACCCAAGAGGTCGGGATCGAAGGCTGGGGCGGCCGGAGCTAGCG
GGGGAGCGAAGGCATTCGTATCGAAGGCCACGGGGGCCGGCGGAACCGCG
CCCCTGGACACGGAGACGAGTAGGAAAAGCAAGGCCCTGAAGACGATAGT
GAAGGCGGCCGTCAAGGGCAGCAAGCTGAGCAGCAGTGCTTCCAGCGCTG
CATCCGCGGACGACAGCTCGGACGACGCCGTCCTCCCTCCGCCAGATGTT
GACGAGGACACCGGCACTCCGTCCAGCAGAAGCAGCAGCAGATGCAGTCG
GGCGGAGCTGAAGATCCCATCGCGCTTAGCAGCAGTGATGACGATGCCGA
GGGAAGCGGTGTGCGCGGGTGGGCAGACCCGGAAGAGATGGAAGACGGCG
GTACAGCTCCCGTTCCCACCCAGGCCTATTCCTCGGGGGTGTTGGTTGGT
CAAAGCAGTGCCCAGCAGCAACAGCAGCAGCATCAGCAGGGCCCACAGGG
ACCAGGCACGGCTGATGTACGCGCGGGGAGGGGACATCTGAGAAAGCCCT
TGGTGCGCAGGCACCGAGCAACCCTGCCTCGGCGACTCGCGGCGGCGGTG
GTGGCGCTTTCTCGTGTCCCCCTCTGCCCGCTGACAGGCGGGTGGGAACG
TCCGGCACAAACATCACGCCCCCTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7102:2869..4594+

>mRNA_E_fasciculatus_S2_contig7102.15279.1 ID=mRNA_E_fasciculatus_S2_contig7102.15279.1|Name=mRNA_E_fasciculatus_S2_contig7102.15279.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=492bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7102:2869..4594+ (Ectocarpus fasciculatus EfasUO2)
ATGTTTCACCTTGAGCGGCCCATCGATCTCCTGCTCAAACCCGCCGCTGG
GGTGACGCACCCTTTGGCCAAGACAGCACGGGAAAGCGGCAAGGGGAAGG
CCAGAGCCAGCGACGGCGACAATGAACCCAAGAGGTCGGGATCGAAGGCT
GGGGCGGCCGGAGCTAGCGGGGGAGCGAAGGCATTCGTATCGAAGGCCAC
GGGGGCCGGCGGAACCGCGCCCCTGGACACGGAGACGAGTAGGAAAAGCA
AGGCCCTGAAGACGATAGTGAAGGCGGCCGTCAAGGGCAGCAAGCTGAGC
AGCAGTGCTTCCAGCGCTGCATCCGCGGACGACAGCTCGGACGACGCCGT
CCTCCCTCCGCCAGATGTTGACGAGGACACCGGCACTCCGTCCAGCAGAA
GCAGCAGCAGATGCAGTCGGGCGGAGCTGAAGATCCCATCGCGCTTAGCA
GCAGCGGGTGGGAACGTCCGGCACAAACATCACGCCCCCTAA
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