mRNA_E_fasciculatus_S2_contig709.15259.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig709.15259.1
Unique NamemRNA_E_fasciculatus_S2_contig709.15259.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig709.15259.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G643_ECTSI)

HSP 1 Score: 338 bits (868), Expect = 1.050e-102
Identity = 192/230 (83.48%), Postives = 199/230 (86.52%), Query Frame = 1 
Query:    1 VFATPVPGGSLRAALQPHPSRFKVVPGRLSRSAEGLMRPRSGVRNYPMASLGNWPLNTTERWMKAIVTQDTSQERLDKLREIRLRRQAERERKRAAWTPVADSSSDSGDSYVSEEEPEVGXXXXXXXXXXXXXXXXXXKLKKAIRKKARRAKKQEAELKSRAHRGRWKTAGRHGGLVARAKASVPSLATRGDLVQLKGHADRVLIGKIARCWATVAGFFGVKPAHGANEV 690
            VFATPVPGGS RAALQPHPSRFKVVPGRLSRSAEGL RPRSGVRNYPM +LGNWPLNTTERWMKAIVTQDTSQERLDKLREIRL+R AERERK AAWTPVADSSSDSGDSYVSEEEPEV        XXXXXXXXXXX               +EAE+KSR++RGRW+TAGRHGGLVARAKASVPSLATRGDLVQLKGHADRVLIGKIARCWATVA FFGVKP HG NEV
Sbjct:  218 VFATPVPGGSRRAALQPHPSRFKVVPGRLSRSAEGLTRPRSGVRNYPMENLGNWPLNTTERWMKAIVTQDTSQERLDKLREIRLKRIAERERKGAAWTPVADSSSDSGDSYVSEEEPEVRGGDEEGRXXXXXXXXXXXXXXXXXXXXXXXXXXREAEMKSRSNRGRWQTAGRHGGLVARAKASVPSLATRGDLVQLKGHADRVLIGKIARCWATVAEFFGVKPTHGGNEV 447
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BLAST of mRNA_E_fasciculatus_S2_contig709.15259.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB91_9PHAE)

HSP 1 Score: 250 bits (639), Expect = 5.600e-72
Identity = 158/216 (73.15%), Postives = 170/216 (78.70%), Query Frame = 1 
Query:   97 AEGLMRPRSGVRNYPMASLGNWPLNTTERWMKAIVTQDTSQERLDKLREIRLRRQAERERKRAAWTPVADSSSDSGDSYVSEEEPEVGXXXXXXXXXXXXXXXXXXKLKKAIRKKARRAKKQEAELKSRAHRGRWKTAGRHGGLVARAKASVPSLATRGDLVQLKGHADRVLIGKIARCWATVAGFFGVKPAHGANEVPP---PPSDVERDFSGGV 735
            ++GL RPRSGVRNYPM SLGNWPLNTTERWMKAIVTQDTSQERLDKLR+IRL+R AE ERKRAAWTP ADSSSDSGDSYVSEEE E  XXXXXXXXXXXXXXXXX                          RGRW+TAGRHGGLVARAKA+VPSLATRGDLVQLKGHADRVLIGKIARCWATVA FFGVKPAH ANE      P ++V + ++ G+
Sbjct:  258 SDGLTRPRSGVRNYPMESLGNWPLNTTERWMKAIVTQDTSQERLDKLRKIRLKRIAECERKRAAWTPGADSSSDSGDSYVSEEELEXXXXXXXXXXXXXXXXXXX--------------------------RGRWQTAGRHGGLVARAKAAVPSLATRGDLVQLKGHADRVLIGKIARCWATVAEFFGVKPAHDANEAKRRSGPIAEVVKAYAAGL 447
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig709.15259.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.050e-10283.48protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.600e-7273.15protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig709contigE_fasciculatus_S2_contig709:300..3658 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score339.3
Seed ortholog evalue1.7e-90
Seed eggNOG ortholog2880.D7G643
Model size857
Hectar predicted targeting categoryother localisation
Exons6
EggNOG OGs29I80@1,2RRF3@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_005060.1
Cds size855
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig709.15259.1prot_E_fasciculatus_S2_contig709.15259.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig709 300..3656 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842369.604903-CDS-E_fasciculatus_S2_contig709:299..4011696842369.604903-CDS-E_fasciculatus_S2_contig709:299..401Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig709 300..401 +
1696842369.6155777-CDS-E_fasciculatus_S2_contig709:1219..13651696842369.6155777-CDS-E_fasciculatus_S2_contig709:1219..1365Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig709 1220..1365 +
1696842369.6261601-CDS-E_fasciculatus_S2_contig709:1768..19331696842369.6261601-CDS-E_fasciculatus_S2_contig709:1768..1933Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig709 1769..1933 +
1696842369.63539-CDS-E_fasciculatus_S2_contig709:2351..24291696842369.63539-CDS-E_fasciculatus_S2_contig709:2351..2429Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig709 2352..2429 +
1696842369.6491117-CDS-E_fasciculatus_S2_contig709:2943..31391696842369.6491117-CDS-E_fasciculatus_S2_contig709:2943..3139Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig709 2944..3139 +
1696842369.663152-CDS-E_fasciculatus_S2_contig709:3488..36561696842369.663152-CDS-E_fasciculatus_S2_contig709:3488..3656Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig709 3489..3656 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig709.15259.1

>prot_E_fasciculatus_S2_contig709.15259.1 ID=prot_E_fasciculatus_S2_contig709.15259.1|Name=mRNA_E_fasciculatus_S2_contig709.15259.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=285bp
VFATPVPGGSLRAALQPHPSRFKVVPGRLSRSAEGLMRPRSGVRNYPMAS
LGNWPLNTTERWMKAIVTQDTSQERLDKLREIRLRRQAERERKRAAWTPV
ADSSSDSGDSYVSEEEPEVGGGDGEGREETEQEKEKRRKLKKAIRKKARR
AKKQEAELKSRAHRGRWKTAGRHGGLVARAKASVPSLATRGDLVQLKGHA
DRVLIGKIARCWATVAGFFGVKPAHGANEVPPPPSDVERDFSGGVAEFWA
LLTGPEVQLTPVEIGVVRGRLNDDAEKERQKKLGG
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mRNA from alignment at E_fasciculatus_S2_contig709:300..3658+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig709.15259.1 ID=mRNA_E_fasciculatus_S2_contig709.15259.1|Name=mRNA_E_fasciculatus_S2_contig709.15259.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3359bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig709:300..3658+ (Ectocarpus fasciculatus EfasUO2)
GTGTTTGCGACCCCTGTGCCAGGCGGGTCTCTCCGCGCCGCTCTTCAGCC
GCACCCGAGTCGGTTTAAGGTCGTACCTGGCCGACTGAGTCGCTCAGCAG
AGGTGAGTGAGTGGTCGCGTTCCGCGACAAGTGTTTACTGTATGTACGTG
AGATAACGAATTTTGATCGTATCGTAGTTTATCGGATTAACGGTTGGGGC
AGCCCTTCGAAAATGCAAGCAATATTGTGGGGATTTAACTTTTTTTTTGT
ACCCTTTTTAGACAGATGGGATGGCGTGGGCACTCAGTCCAGAGGGCGCT
TCCACAGCGACACTGGATTTGGGCCGAAAACAAATCGCGACTATGTGCGT
CATTCACGTCGTGGGCGAGCCGAAAAGCTGGCACGAACGCTACGCCAGGC
CTCGGCGCCTGTGAGCATCTGCACCGACACAACAACCCGTGGTTGAAGCA
CAAAACACGTTTTGGGTACTTGATTTCGCTTCTCGAGTGTGAGCCCTCCC
TCCCCCCGGACAAAACCAACAGCCAAGCACGCACACAAACGTTTACATTC
AAACCAACTCTGGGACGGACACGGAATCATCTCTTCCGACCTCGCCCCAG
TCTCCCCCCCCCCTCCGCAGCAAGGTTGCCGAAGTCCTCCGCATATACGA
CTCATGGAAAACAGCTCACCTTTCGTGCAACGCATCGAGCATATATTTAG
CGTATGATACGTACCTGTTCGGCACTGACGCGTTCCGCGTCAGGTATAAA
CGCAAACGAGGTTGTGTTTCGTTATTCCCCACCACCATCAACGGCCAACA
AAGCCCCCTCTCTTCCATCTACCTCCCCGCGATCGAATATAGCCGTAACA
TGGCGTTCACATCCAACTATTGAATCGAAGCCCGTTTTTGTGTCGAACCA
TATCTGTTCCGCACGAAAAGGGTCTCATGCGTCCTCGATCGGGAGTTCGC
AATTACCCTATGGCGAGCCTGGGCAACTGGCCCCTGAACACCACCGAGCG
GTGGATGAAGGCAATCGTTACCCAGGACACCTCGCAAGAGCGTCTAGACA
AGCTGCGGGAGATTCGGTAAGAGGGATCGCCTTGATCAAACCACACGACA
AGTTTTGGATGCTGTTGGGCAGTTCTGATTTTAACGCGGCAACGCAAGAA
CAAGAACAAAAAATAAAACAACACAACATTAGTGTTGCCGGGACAATACA
GCAACAACATGTACATGACATCCACGAAGTGCTGTAATATCGCACACGCA
AGCAACGGATAAAGAACGCACGGAGGGGATGCACAGGTACCACCTGTGAC
GCACGAACGAGATCATCCCGCCTTGGCCTGTCGCGTATGCTTACCCTAGC
ATTCGACTTGGGGGCAGCTATCCAAGGTACTAACGCTCCCTCCCGGCACT
CAACACCCTCTCATCGGGCTATATATCCCCAACGACACAAACACGCTGCC
GCCGCAACGCGAGCCGCAGGTTGAGGCGCCAAGCAGAGCGCGAACGAAAG
AGGGCCGCGTGGACGCCGGTTGCCGATTCCTCGAGCGATAGCGGTGACTC
GTACGTGAGCGAGGAGGAGCCGGAGGTGGGCGGGGGGGACGGGGAAGGCC
GCGAGGAAACCGAGCAAGAGAAAGAGAAGCGGAGGTAACTCGTACACACA
AGAGAGCTCGTTGGCGACAAGTGGCTCAGAGTCTTAGGCGTGTGCTTCCC
GGACAAGGTGGTTATTGGGGACCAATGTGCGCTGGATAGCAAGACTTGTG
CAATAGCACGGCGTAGTGGCGTCGCAAATGACCGGCAAGCCTGAAAGGAA
ACTGGCAAGGAGAGCAAGAAAAACCGAGGTGGTGAATCCGTCGAATGGTT
TTTGTTCCCTAAACCCCGAGATGTGTTGCCAGACTCACACACTCGCTTAA
CTCACATGACAGGACGTCTCACTTGCGCATGTTCCAGCATGGCAACTTGC
ACCGCGACTACCGGGAAAGCCCTTTCGTTCGCTTCCTATTTTGCCAGACG
TTCAAAGCAAACTGCGGGGGCGATCGCATCTTGCGCGTGCTGCCTCCCCC
AGGAAGCTGAAGAAGGCTATCAGAAAGAAGGCACGAAGGGCGAAGAAGCA
AGAAGCGGAACTGAAAAGTCGTGCTCACCGGTGAGAAGCCCCCGTAAGGA
GTAATGGGAGTTTAGAAGAGGTAAGCGGAAATTTCGCCTTTCAAGCAGAA
AGGGGGGCGTCCTTATGCCTTGAGATGTGAACGACCTATGTAGCGGAATG
CTTTGCCAGTACGCTCGTCGAAAGAATGCTTTCAGTGCTTTACGTACAAG
CCTCCGTAGCTGTTCATTTGGCCCGCCAGTATATAGTAGGGTAGAATCAC
CTGAACAAGACTATCGTCTACAATCGTCTCTGTATGACTCGAGTGTTTGA
GTATTTGATCTCACTGGTTGGATGATTGGAGCCCCCGCCGAGACTACCTT
CTGCTTTATTTGTCTCTTCCATAGCGCCCCGATGGGAAAAAAGCATCCAC
CCGCACAACACGAGCGCGATGTTCCCCTGCGATATACCAAACCGACTTCG
GGAGCGACCAAAACACGACCTGGCTCGACTTTCAACCTGCTCAATTTTCT
TCGCTCAGTCATGAAAGCGAACATCACTTGTGATTAACCTACAGGGGGAG
GTGGAAGACAGCGGGCAGGCATGGCGGCCTTGTCGCCCGCGCGAAGGCCT
CCGTGCCCTCCCTCGCCACACGCGGGGACCTGGTTCAGCTCAAGGGGCAC
GCCGATCGCGTGCTGATCGGCAAGATCGCTCGCTGCTGGGCAACGGTGGC
AGGCTTTTTCGGGGTGAAACCCGCCCATGGCGCAAACGAGGTGGGGTGCG
AGCGTTCGTGTGGGGGAACGCTGATAGTACCCAGCGGGGAGGGAATTGGC
GTCCTGGAAAGTAGATCGAAGGAAATCTCACGGTGCGTCGTGACCTCTCG
GCACGCCCTCGAGCATGCCTCCGTATCACCCCCGTACACAGGTATACGTG
AAAACGACGACACACACCACGTGGGGGTAACGGCGACTGGCGAAAGCGCC
TTAGGGTCAGCATTTTGACGGATGGCCGTCTCGAAAAGGGGTGCGTGATC
CGACCAGCATACACACAATCGTCACACATTCCTCCTATTCTCCTCGCTCG
CCGTCCTCCTGTGACGCGCTTGTTCTCCGACAATTCAAGGTCCCGCCCCC
CCCTTCTGACGTCGAGCGAGACTTCTCTGGCGGTGTGGCGGAATTCTGGG
CGTTGTTGACCGGGCCCGAGGTGCAGCTCACGCCCGTGGAGATAGGTGTC
GTGCGGGGAAGACTCAACGACGACGCGGAGAAAGAGCGTCAGAAAAAGTT
GGGAGGCAT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig709:300..3658+

>mRNA_E_fasciculatus_S2_contig709.15259.1 ID=mRNA_E_fasciculatus_S2_contig709.15259.1|Name=mRNA_E_fasciculatus_S2_contig709.15259.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=855bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig709:300..3658+ (Ectocarpus fasciculatus EfasUO2)
GTGTTTGCGACCCCTGTGCCAGGCGGGTCTCTCCGCGCCGCTCTTCAGCC
GCACCCGAGTCGGTTTAAGGTCGTACCTGGCCGACTGAGTCGCTCAGCAG
AGGGTCTCATGCGTCCTCGATCGGGAGTTCGCAATTACCCTATGGCGAGC
CTGGGCAACTGGCCCCTGAACACCACCGAGCGGTGGATGAAGGCAATCGT
TACCCAGGACACCTCGCAAGAGCGTCTAGACAAGCTGCGGGAGATTCGGT
TGAGGCGCCAAGCAGAGCGCGAACGAAAGAGGGCCGCGTGGACGCCGGTT
GCCGATTCCTCGAGCGATAGCGGTGACTCGTACGTGAGCGAGGAGGAGCC
GGAGGTGGGCGGGGGGGACGGGGAAGGCCGCGAGGAAACCGAGCAAGAGA
AAGAGAAGCGGAGGAAGCTGAAGAAGGCTATCAGAAAGAAGGCACGAAGG
GCGAAGAAGCAAGAAGCGGAACTGAAAAGTCGTGCTCACCGGGGGAGGTG
GAAGACAGCGGGCAGGCATGGCGGCCTTGTCGCCCGCGCGAAGGCCTCCG
TGCCCTCCCTCGCCACACGCGGGGACCTGGTTCAGCTCAAGGGGCACGCC
GATCGCGTGCTGATCGGCAAGATCGCTCGCTGCTGGGCAACGGTGGCAGG
CTTTTTCGGGGTGAAACCCGCCCATGGCGCAAACGAGGTCCCGCCCCCCC
CTTCTGACGTCGAGCGAGACTTCTCTGGCGGTGTGGCGGAATTCTGGGCG
TTGTTGACCGGGCCCGAGGTGCAGCTCACGCCCGTGGAGATAGGTGTCGT
GCGGGGAAGACTCAACGACGACGCGGAGAAAGAGCGTCAGAAAAAGTTGG
GAGGC
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