mRNA_E_fasciculatus_S2_contig7083.15254.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7083.15254.1
Unique NamemRNA_E_fasciculatus_S2_contig7083.15254.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig7083.15254.1 vs.
Match: Endo/exonuclease/phosphatase (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN4_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 9.650e-37
Identity = 69/82 (84.15%), Postives = 74/82 (90.24%), Query Frame = 1 
Query:    1 ILEFRPSIVCLQEVDKDQYEAFFRKELESLGYAGAYFQRTGGKSDGCATFVLRQQAVLVEQEGVAYKVRGHPVLDRDKAGLL 246
            +LEFRPSIVCLQEVDKD YEAFFRKELESLGYAGAY QR+GGK DGCATFVLRQQA LVE+E VAYK++GHPVLDRD   LL
Sbjct:   82 VLEFRPSIVCLQEVDKDLYEAFFRKELESLGYAGAYCQRSGGKLDGCATFVLRQQAALVEEERVAYKIQGHPVLDRDNVALL 163
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BLAST of mRNA_E_fasciculatus_S2_contig7083.15254.1 vs.
Match: Endo/exonuclease/phosphatase (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI6_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 1.320e-29
Identity = 66/106 (62.26%), Postives = 71/106 (66.98%), Query Frame = 1 
Query:    1 ILEFRPSIVCLQEVDKDQYEAFFRKEL------------------------------ESLGYAGAYFQRTGGKSDGCATFVLRQQAVLVEQEGVAYKVRGHPVLDR 228
            ILEFRPS+VCLQEVD D YEAFFRKEL                              ESLGY+GAY QR+GGKSDGCATFVLRQQA LV +EGVAYKV+GHPVLDR
Sbjct:    4 ILEFRPSVVCLQEVDNDLYEAFFRKELVSAIGVRYRKKRPRAVSCRDWRCPTIVAPEESLGYSGAYCQRSGGKSDGCATFVLRQQAALVGEEGVAYKVQGHPVLDR 109
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BLAST of mRNA_E_fasciculatus_S2_contig7083.15254.1 vs.
Match: protein (angel homolog 2-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04C2BD)

HSP 1 Score: 82.8 bits (203), Expect = 1.350e-14
Identity = 42/112 (37.50%), Postives = 63/112 (56.25%), Query Frame = 1 
Query:    1 ILEFRPSIVCLQEVDKDQYEAFFRKELESLGYAGAYFQRTGGKSDGCATFVLRQQAVLVEQEGVAYKVRGHPVLDRDKAGLLFHLRSFVRTPXXXXXXXXXXLAATSPHLLF 336
            +L +   I+CLQE+D   ++ +F  +L+  GY G + QRTGGKSDGCATF  R++  LV+   V +     PVLD+D  G++  L++  +T           L   + HLLF
Sbjct:  198 LLSYNAEILCLQEIDALHFKEWFFPKLKEAGYTGFFNQRTGGKSDGCATFFKREKFTLVKHTQVKFFTPNVPVLDKDNVGIILLLKANAQTKDHF-------LCVANTHLLF 302
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BLAST of mRNA_E_fasciculatus_S2_contig7083.15254.1 vs.
Match: protein (angel homolog 2-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201EAB71)

HSP 1 Score: 76.6 bits (187), Expect = 1.830e-12
Identity = 38/85 (44.71%), Postives = 50/85 (58.82%), Query Frame = 1 
Query:    1 ILEFRPSIVCLQEVDKDQYEAFFRKELESLGYAGAYFQRTGGKSDGCATFVLRQQAVLVEQEGVAYKVRGHPVLDRDKAGLLFHL 255
            I    P ++CLQEV +D Y+ FF+ +LE+LGY G Y +RTG K DGCATF  + +  L     V Y   G  +LDRD   L+  L
Sbjct:  273 ITSHSPDVMCLQEVQEDHYQDFFKPQLENLGYRGVYMKRTGDKCDGCATFYKQDRFSLGNTTPVEYCRGG--LLDRDNIALILEL 355
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BLAST of mRNA_E_fasciculatus_S2_contig7083.15254.1 vs.
Match: Endo/exonuclease/phosphatase (domain-containing protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4AEJ7_LOTGI)

HSP 1 Score: 75.1 bits (183), Expect = 4.410e-12
Identity = 35/82 (42.68%), Postives = 50/82 (60.98%), Query Frame = 1 
Query:   10 FRPSIVCLQEVDKDQYEAFFRKELESLGYAGAYFQRTGGKSDGCATFVLRQQAVLVEQEGVAYKVRGHPVLDRDKAGLLFHL 255
            + P I+CLQEV  D YE+FF+ +L  LGY   Y +R+G K DGCATF  + +  LV+   + +  +G  +LDRD   L+  L
Sbjct:   61 YSPDIICLQEVQSDHYESFFKNKLFKLGYGSEYIKRSGDKPDGCATFYKQTKFTLVQSTPIEF-YKGD-ILDRDNVALILEL 140
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BLAST of mRNA_E_fasciculatus_S2_contig7083.15254.1 vs.
Match: protein (angel homolog 2-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HSN6_ACTTE)

HSP 1 Score: 75.5 bits (184), Expect = 4.450e-12
Identity = 36/82 (43.90%), Postives = 47/82 (57.32%), Query Frame = 1 
Query:    1 ILEFRPSIVCLQEVDKDQYEAFFRKELESLGYAGAYFQRTGGKSDGCATFVLRQQAVLVEQEGVAYKVRGHPVLDRDKAGLL 246
            IL +   I+CLQEV+   YE +F+ EL   GY G Y +RTG K DGCATF    +  +V  +   YK    PV+DRD   +L
Sbjct:  179 ILHYNADILCLQEVEDQHYENWFKPELLKAGYQGTYKKRTGDKVDGCATFYKESKFRIVTHQFFDYKREDVPVMDRDNVAML 260
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BLAST of mRNA_E_fasciculatus_S2_contig7083.15254.1 vs.
Match: protein (angel homolog 2-like isoform X1 n=2 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE57AEC)

HSP 1 Score: 75.1 bits (183), Expect = 5.610e-12
Identity = 36/85 (42.35%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:    1 ILEFRPSIVCLQEVDKDQYEAFFRKELESLGYAGAYFQRTGGKSDGCATFVLRQQAVLVEQEGVAYKVRGHPVLDRDKAGLLFHL 255
            I    P ++CLQEV +D Y+ FF+ ++E+LGY G Y +RTG K DGCATF  + +  + +   V Y   G  +LDRD   L+  L
Sbjct:  280 ITSHSPDVMCLQEVQEDHYQDFFKPQMENLGYRGVYMKRTGDKCDGCATFYKQDKFSVGKTTPVEYCRGG--LLDRDNIALILEL 362
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BLAST of mRNA_E_fasciculatus_S2_contig7083.15254.1 vs.
Match: protein (angel homolog 2-like n=3 Tax=Acropora TaxID=6127 RepID=UPI001CF2F346)

HSP 1 Score: 75.1 bits (183), Expect = 5.940e-12
Identity = 36/112 (32.14%), Postives = 61/112 (54.46%), Query Frame = 1 
Query:    1 ILEFRPSIVCLQEVDKDQYEAFFRKELESLGYAGAYFQRTGGKSDGCATFVLRQQAVLVEQEGVAYKVRGHPVLDRDKAGLLFHLRSFVRTPXXXXXXXXXXLAATSPHLLF 336
            IL ++  ++CLQEV+K  +EA+F   L++ GY G Y +RT  K+DGCATF    +  LV+ + V++      ++DRD   ++  L+    T           +  ++ H+LF
Sbjct:  177 ILHYKADVICLQEVEKCHFEAWFEPRLKAKGYTGIYMKRTRDKTDGCATFFKHSRFTLVKSKLVSFLKPDVRLMDRDNVAIVVLLKPKCGTGKPPPQKSNNLICVSNTHVLF 288
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BLAST of mRNA_E_fasciculatus_S2_contig7083.15254.1 vs.
Match: Protein (angel-like 2 n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RXW7_STYPI)

HSP 1 Score: 72.8 bits (177), Expect = 3.060e-11
Identity = 37/112 (33.04%), Postives = 59/112 (52.68%), Query Frame = 1 
Query:    1 ILEFRPSIVCLQEVDKDQYEAFFRKELESLGYAGAYFQRTGGKSDGCATFVLRQQAVLVEQEGVAYKVRGHPVLDRDKAGLLFHLRSFVRTPXXXXXXXXXXLAATSPHLLF 336
            +L +   ++CLQEV+   YE +F  +L   GY G Y QR+G K+DGCATF      +LV+ E V++   G  ++DR    ++  L+   + P          +  ++ HLLF
Sbjct:  196 LLYYNADVLCLQEVEVSHYEDWFEPKLREKGYTGVYKQRSGDKTDGCATFFRESIFMLVKSELVSFNKPGVKLMDRHNVAVVVLLKP--KVPGRSSRNSKNLVCISNTHLLF 305
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BLAST of mRNA_E_fasciculatus_S2_contig7083.15254.1 vs.
Match: Ofus.G15125 (protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1UH65_OWEFU)

HSP 1 Score: 72.4 bits (176), Expect = 5.430e-11
Identity = 37/81 (45.68%), Postives = 49/81 (60.49%), Query Frame = 1 
Query:   16 PSIVCLQEVDKDQYEAFFRKELESLGYAGAYFQRTGGKSDGCATFVLRQQAVLVEQEGVAYKVRGHPVLDRDKAGLLFHLR 258
            P +VCLQEV+++ YE FF+K+L++ GY G + +RTG K DGCA F    +   VE   V Y   G   LDRD   L+  LR
Sbjct:  481 PDVVCLQEVNEEHYETFFKKKLKAKGYDGHFKKRTGDKKDGCAIFYNPSRFEHVESIPVEYLHDGAYNLDRDNIALITLLR 561
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7083.15254.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Endo/exonuclease/phosphatase9.650e-3784.15domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Endo/exonuclease/phosphatase1.320e-2962.26domain-containing protein n=1 Tax=Ectocarpus silic... [more]
protein1.350e-1437.50angel homolog 2-like n=1 Tax=Xenia sp. Carnegie-20... [more]
protein1.830e-1244.71angel homolog 2-like n=1 Tax=Haliotis rufescens Ta... [more]
Endo/exonuclease/phosphatase4.410e-1242.68domain-containing protein n=1 Tax=Lottia gigantea ... [more]
protein4.450e-1243.90angel homolog 2-like n=1 Tax=Actinia tenebrosa Tax... [more]
protein5.610e-1242.35angel homolog 2-like isoform X1 n=2 Tax=Haliotis r... [more]
protein5.940e-1232.14angel homolog 2-like n=3 Tax=Acropora TaxID=6127 R... [more]
Protein3.060e-1133.04angel-like 2 n=2 Tax=Stylophora pistillata TaxID=5... [more]
Ofus.G151255.430e-1145.68protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7083contigE_fasciculatus_S2_contig7083:6136..7895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeMetazoa
Stop1
Start0
Seed ortholog score77.8
Seed ortholog evalue4e-12
Seed eggNOG ortholog6412.HelroP124292
Preferred nameANGEL1
Model size703
KEGG koko:K18729
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005794,GO:0005801,GO:0005829,GO:0007346,GO:0008150,GO:0008190,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0010468,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0012505,GO:0015030,GO:0016604,GO:0019219,GO:0019222,GO:0019904,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031369,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043487,GO:0043488,GO:0043489,GO:0044422,GO:0044424,GO:0044428,GO:0044431,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045786,GO:0045930,GO:0045934,GO:0048255,GO:0048471,GO:0048518,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051726,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0070013,GO:0070935,GO:0080090,GO:0097159,GO:1901363,GO:1902369,GO:1902373,GO:1903311,GO:1903312
Exons3
EggNOG free text desc.Endonuclease/Exonuclease/phosphatase family
EggNOG OGs38G1V@33154,3B9ZN@33208,3CTPG@33213,COG5239@1,KOG2338@2759
Cds size378
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842369.1793697-CDS-E_fasciculatus_S2_contig7083:6135..62161696842369.1793697-CDS-E_fasciculatus_S2_contig7083:6135..6216Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7083 6136..6216 +
1696842369.1956933-CDS-E_fasciculatus_S2_contig7083:6898..70441696842369.1956933-CDS-E_fasciculatus_S2_contig7083:6898..7044Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7083 6899..7044 +
1696842369.2108526-CDS-E_fasciculatus_S2_contig7083:7419..75701696842369.2108526-CDS-E_fasciculatus_S2_contig7083:7419..7570Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7083 7420..7570 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842369.2256627-UTR-E_fasciculatus_S2_contig7083:7570..78951696842369.2256627-UTR-E_fasciculatus_S2_contig7083:7570..7895Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig7083 7571..7895 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7083.15254.1prot_E_fasciculatus_S2_contig7083.15254.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7083 6136..7570 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7083.15254.1

>prot_E_fasciculatus_S2_contig7083.15254.1 ID=prot_E_fasciculatus_S2_contig7083.15254.1|Name=mRNA_E_fasciculatus_S2_contig7083.15254.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=126bp
ILEFRPSIVCLQEVDKDQYEAFFRKELESLGYAGAYFQRTGGKSDGCATF
VLRQQAVLVEQEGVAYKVRGHPVLDRDKAGLLFHLRSFVRTPPPPPPPPP
PVLAATSPHLLFLXXXXPLFFRRVS*
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mRNA from alignment at E_fasciculatus_S2_contig7083:6136..7895+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7083.15254.1 ID=mRNA_E_fasciculatus_S2_contig7083.15254.1|Name=mRNA_E_fasciculatus_S2_contig7083.15254.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1760bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7083:6136..7895+ (Ectocarpus fasciculatus EfasUO2)
ATACTAGAGTTCCGGCCGTCCATCGTCTGTCTTCAAGAGGTGGACAAGGA
CCAGTACGAGGCCTTCTTCAGGAAGGAGTTGGTGAGTGTCATGGGCGTCC
GACGCAGAAAAAAAACGTTCCAAAGCCGTTACATGTAGAGTTTGGAGACG
TCTCACAATCGTCCCGCCGGAGGTGAGACATGCCGCAGACAGCCAGTAAG
TACCGTATCCGGTTTTCAATAGAACCAGGTTTTGCGTGTAGTACCGTGCT
TGCGGCGCGGGTGTCAAACTTGTCAAGTGTCGAGTGCGGGTAGTAAATAC
CACGACTAACTGCCCGCCGCTAACATAGAGAATGCTGAAACACGTTTAGC
TGATTCGAATAAACGCTATAATGAAGCTAAAAAACAATGGTCACAGATGG
ATATTATTATTAAAGAGATAACTCAGCAAATGGAAACAACAAAACAAAAT
GTTTTAAAGCTGAAATGGGATCAAGGAAAAGACGACCTTCGGTACGTACG
CACCCTTGCCTGCCCTCGTTGCGGTCCTATCTAAAAAAATCGAGTCTTCC
TGCCCCTGTTTCACATGTGAACGAAACAAGCGCGACACATTTGCCTGTGT
GTGCACAGCAGCGCGCATGCCGGTCCACAATTCTGCTGCTCGTGCGTTGT
GCTAGGCGTGGCAAAATGTTTGAGTTTTTTTTTCTTCTTGCCATCGTGCC
ATCGACCGCCCGCCGTGACGGACGTTGTTGGTCGTCTCTCTTCTTCTTGC
TCGCGTGGCCCAGGAGTCGCTGGGGTACGCCGGGGCCTATTTCCAGCGGA
CCGGGGGAAAGTCGGACGGCTGCGCAACGTTCGTGCTGCGGCAGCAAGCG
GTGCTGGTTGAGCAGGAAGGTGTGGCGTACAAGGTCCGGGGTCACCCCGT
GTTAGACCGGTGAGACGGGGTTTAATCCCCAAAAGTGTCCCTTGCTGCGG
TATTATTTTAGTGCTCGAGTGGTGGGATGGGCGACTCGCGTGAGGTGGGT
GTTTGAAGGAAAAATCTTATCCTGAACAGGTTATGGCACAACCCAGCGAT
TTTCTTTGGTTGGTACTCTCTCTTCGCACGGGGTTTCGTTGACCCGTGTA
CATCGCTCGATCGAGGATTTTGGCGGCGCACTCTTATGGAGCAGCAGCGT
TCTCCGTGGATGGGTCGTTCGACCCTCTGCCTGGAACGGAACGGGCGTGG
TTGGTTTCCCCAATATTGTACGCCGTGATGCAATACGTATTTCACGAGAA
TCCTGCAACTTGTAGTGCAGACTTTTGGCTTGAGCGACAAAGCTGGTCTT
CTTTTCCACCTCCGTTCCTTCGTTCGCACCCCCCCCCCCCCCCCCCCCCC
TCCCCCTCCGGTTCTGGCAGCAACCAGCCCCCACCTTCTGTTCTTGTCNN
NNNNNNNNCCCCTATTCTTCCGCCGGGTTTCGTAGAGACAACGTCGCCCT
GCTGGTGGTTGTGGACGTGCTCTTGCCGGGCCACGACACTCCCCACTCCG
CCGCTCGCGCGGGCGTCCACGGCGCAGCAGCCTCCGCGCCTGCCTGTGGA
GGAGCCTCCCCCCCTTCAGCCGGAGGAGGGGGTCCTGCGGGTTCATCCCA
CGGGGCCCCGTCGCCCCCGAGGGGCAGCTCTGCTCGTCTTGTGGTCGCGA
ACACGCACCTGGTGTTCAACCCCAAGAGGGGAGACATCAAAACCGCCCAG
CTCATGATGCTCACCGGTCAGGTTGAAAGGTGGGAAAAGGGAGGGCGCGC
GCGCGCGCGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7083:6136..7895+

>mRNA_E_fasciculatus_S2_contig7083.15254.1 ID=mRNA_E_fasciculatus_S2_contig7083.15254.1|Name=mRNA_E_fasciculatus_S2_contig7083.15254.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=378bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7083:6136..7895+ (Ectocarpus fasciculatus EfasUO2)
ATACTAGAGTTCCGGCCGTCCATCGTCTGTCTTCAAGAGGTGGACAAGGA
CCAGTACGAGGCCTTCTTCAGGAAGGAGTTGGAGTCGCTGGGGTACGCCG
GGGCCTATTTCCAGCGGACCGGGGGAAAGTCGGACGGCTGCGCAACGTTC
GTGCTGCGGCAGCAAGCGGTGCTGGTTGAGCAGGAAGGTGTGGCGTACAA
GGTCCGGGGTCACCCCGTGTTAGACCGCGACAAAGCTGGTCTTCTTTTCC
ACCTCCGTTCCTTCGTTCGCACCCCCCCCCCCCCCCCCCCCCCTCCCCCT
CCGGTTCTGGCAGCAACCAGCCCCCACCTTCTGTTCTTGTCNNNNNNNNN
NCCCCTATTCTTCCGCCGGGTTTCGTAG
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