mRNA_E_fasciculatus_S2_contig7082.15253.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig7082.15253.1
Unique NamemRNA_E_fasciculatus_S2_contig7082.15253.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig7082.15253.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig7082contigE_fasciculatus_S2_contig7082:5860..7320 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size1043
Hectar predicted targeting categoryother localisation
Exons2
Cds size1041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842369.034604-CDS-E_fasciculatus_S2_contig7082:5859..60691696842369.034604-CDS-E_fasciculatus_S2_contig7082:5859..6069Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7082 5860..6069 -
1696842369.0462003-CDS-E_fasciculatus_S2_contig7082:6489..73201696842369.0462003-CDS-E_fasciculatus_S2_contig7082:6489..7320Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig7082 6490..7320 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig7082.15253.1prot_E_fasciculatus_S2_contig7082.15253.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig7082 5860..7320 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig7082.15253.1

>prot_E_fasciculatus_S2_contig7082.15253.1 ID=prot_E_fasciculatus_S2_contig7082.15253.1|Name=mRNA_E_fasciculatus_S2_contig7082.15253.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=347bp
WGRPGRVSGGRGVGHPPVQDPRVPCERPALHGGARRVQGEERRRRVGQQR
LLAGRGRQAHRRPVLHRALPRPSHAAMRAGPGLRLRCFRRRAPAVGLRPQ
EGPRRNARARHGARQVPAGKRAAHLEVHSRGTTLRFLEVLEEMATAGHAD
VSFKIGSGNVRAHVFFGVPCGPDGKLDTVVLFGTNHHSMMRWSFVANSII
RSQIAASALAGNPLTQEQIALLWLMSTTGTLTPEEWKEHFAELIEELGEE
LLAKFEEYIREHDGDMDRAYQSLIGWKGGMAAPTTKAKKGGEWETALRER
REEVARLGAALRTRGNAKAVGKVALEVDEISAKLEAQYRRWDLSGGC
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mRNA from alignment at E_fasciculatus_S2_contig7082:5860..7320-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig7082.15253.1 ID=mRNA_E_fasciculatus_S2_contig7082.15253.1|Name=mRNA_E_fasciculatus_S2_contig7082.15253.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1461bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7082:5860..7320- (Ectocarpus fasciculatus EfasUO2)
TGGGGTCGGCCCGGTCGTGTTTCGGGAGGGCGTGGTGTGGGACACCCTCC
AGTGCAAGATCCTCGCGTTCCCTGTGAACGCCCAGCACTTCATGGGGGGG
CCCGACGAGTACAAGGGGAAGAACGCCGCCGTCGTGTGGGGCAACAACGC
CTACTGGCTGGGCGAGGACGGCAAGCTCATCGACGGCCAGTGCTGCACCG
CGCACTACCTCGGCCAAGTCATGCAGCGATGCGGGCTGGACCGGGTCTTC
GTCTGCGATGCTTCCGGCGTCGCGCACCCGCGGTCGGGCTCCGCCCTCAA
GAAGGACCACGCAGGAACGCGCGAGCTCGTCACGGAGCACGTCAGGTACC
TGCTGGGAAGCGGGCGGCGCATCTTGAAGTGCACTCCCGAGGAACGACCT
TGAGGTTCCTCGAGGTTCTGGAGGAGATGGCCACCGCGGGTCACGCGGAC
GTTTCCTTCAAGATCGGCAGCGGTAACGTTCGTGCCCACGTCTTCTTCGG
TGTGCCGTGCGGCCCCGACGGCAAGCTGGACACGGTGGTGCTTTTCGGCA
CCAATCATCACTCGATGATGAGATGGAGCTTCGTCGCCAACTCTATCATC
CGGTCCCAGATCGCGGCTTCGGCGTTGGCCGGGAACCCGCTCACCCAGGA
GCAGATCGCGTTGCTTTGGCTGATGTCCACGACGGGCACGCTCACACCGG
AGGAGTGGAAGGAGCATTTCGCGGAGCTCATAGAGGAGCTCGGGGAGGAG
CTGCTGGCGAAGTTTGAGGAGTACATCCGGGAGCACGACGGCGACATGGA
CCGCGCCTACCAGAGCCTGATCGGCTGGAAGGTGTGTTGTGTTCGTGTCC
CCCTGTCTGCCGTTGGATTGTTCCCGTCGCGGGATCGAAGCAGGCTCGTA
TGTATGCCATGTCGATGTGTGTGCACAACAAAACAGTCTTTGTCCTTGGA
CGTAGACTAGAGTTTGTCCGTCGTGTATGTTCAAGGTTGCTGGTCGCTCG
AAGACAGTGTAGCCTAGCTCTCAACCAAAATACGCTTCATACACTTGCGT
AACCCCTTTTTTTTCTCGCTCTGCCTGACAAGACGTAGAGGGCCAAAGTG
ATTGGACCCACACCGTACGAGTGAACGTCTGCATCCATCTTTCGGCATCG
CCCCACCCCATCTCCCAGAAAAGAAACAGAACTGATTTTCCGTTTGTTTG
TCCGCTTCCTGCCTCGAAAAACATCGTGGTTGTTCCAACCTTGGCGATCA
GGGAGGCATGGCGGCGCCAACAACAAAAGCCAAGAAGGGCGGGGAGTGGG
AGACGGCGCTTCGCGAGAGGCGCGAGGAAGTGGCGAGGCTAGGGGCGGCG
CTTCGGACGCGGGGCAACGCCAAGGCCGTGGGCAAGGTGGCGTTGGAAGT
AGACGAGATCTCCGCCAAGCTCGAGGCGCAGTACCGTCGCTGGGATTTGT
CCGGTGGGTGT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig7082:5860..7320-

>mRNA_E_fasciculatus_S2_contig7082.15253.1 ID=mRNA_E_fasciculatus_S2_contig7082.15253.1|Name=mRNA_E_fasciculatus_S2_contig7082.15253.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1041bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig7082:5860..7320- (Ectocarpus fasciculatus EfasUO2)
TGGGGTCGGCCCGGTCGTGTTTCGGGAGGGCGTGGTGTGGGACACCCTCC
AGTGCAAGATCCTCGCGTTCCCTGTGAACGCCCAGCACTTCATGGGGGGG
CCCGACGAGTACAAGGGGAAGAACGCCGCCGTCGTGTGGGGCAACAACGC
CTACTGGCTGGGCGAGGACGGCAAGCTCATCGACGGCCAGTGCTGCACCG
CGCACTACCTCGGCCAAGTCATGCAGCGATGCGGGCTGGACCGGGTCTTC
GTCTGCGATGCTTCCGGCGTCGCGCACCCGCGGTCGGGCTCCGCCCTCAA
GAAGGACCACGCAGGAACGCGCGAGCTCGTCACGGAGCACGTCAGGTACC
TGCTGGGAAGCGGGCGGCGCATCTTGAAGTGCACTCCCGAGGAACGACCT
TGAGGTTCCTCGAGGTTCTGGAGGAGATGGCCACCGCGGGTCACGCGGAC
GTTTCCTTCAAGATCGGCAGCGGTAACGTTCGTGCCCACGTCTTCTTCGG
TGTGCCGTGCGGCCCCGACGGCAAGCTGGACACGGTGGTGCTTTTCGGCA
CCAATCATCACTCGATGATGAGATGGAGCTTCGTCGCCAACTCTATCATC
CGGTCCCAGATCGCGGCTTCGGCGTTGGCCGGGAACCCGCTCACCCAGGA
GCAGATCGCGTTGCTTTGGCTGATGTCCACGACGGGCACGCTCACACCGG
AGGAGTGGAAGGAGCATTTCGCGGAGCTCATAGAGGAGCTCGGGGAGGAG
CTGCTGGCGAAGTTTGAGGAGTACATCCGGGAGCACGACGGCGACATGGA
CCGCGCCTACCAGAGCCTGATCGGCTGGAAGGGAGGCATGGCGGCGCCAA
CAACAAAAGCCAAGAAGGGCGGGGAGTGGGAGACGGCGCTTCGCGAGAGG
CGCGAGGAAGTGGCGAGGCTAGGGGCGGCGCTTCGGACGCGGGGCAACGC
CAAGGCCGTGGGCAAGGTGGCGTTGGAAGTAGACGAGATCTCCGCCAAGC
TCGAGGCGCAGTACCGTCGCTGGGATTTGTCCGGTGGGTGT
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